CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. RPL13A, Ribosomal protein L13a
Sequence ID:NM_012423

Database Links

UniGeneEntrez GeneSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 54685357 - 54687374

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822802Full LengthBC000514ribosomal protein L13a
2961667Full LengthBC001675ribosomal protein L13a
2961667Full LengthBC001836ribosomal protein L13a
4908022Full LengthBC062537ribosomal protein L13a
5808487Full LengthBC071929ribosomal protein L13a
6161599Full LengthBC065236ribosomal protein L13a
6726477Full LengthBC105605ribosomal protein L13a
6736442Full LengthBC070223ribosomal protein L13a
3545758IncompleteBC004900ribosomal protein L13a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036555  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_012423 NP_036555 P40429 Ribosomal_L13

Related Sequences

 
mRNAGenPeptSwissProt
BC000514 AAH00514 P40429
BC001675 AAH01675 P40429
BC001836 AAH01836 P40429
BC004900 AAH04900 Q9BSQ6
BC062537 AAH62537 P40429
BC065236 AAH65236 P40429
BC070223 AAH70223 P40429
BC071929 AAH71929 P40429
BC105605 AAI05606 Q0VGL3
EU831542 ACE86461  
EU831455 ACE87142  
AB082924 BAC16800 Q8J015
AK222747 BAD96467 Q53H34
AK291120 BAF83809 P40429
AK297859 BAG60190 B4DNC8
X56932 CAA40254 P40429

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL13A NP_036555 R.norvegicus Rpl13a 317646   NP_775462 97
M.musculus Rpl13a 22121 Gene Info NP_033464 96
A.thaliana AT3G07110 819897   NP_001030654 62
S.pombe rpl1601 2541175   NP_595253 61
A.gambiae AgaP_AGAP010257 1279679   XP_319446 60
D.melanogaster RpL13A 40687   NP_649560 58
S.cerevisiae RPL16B 855655   NP_014330 58
C.elegans rpl-16 175455   NP_497721 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

Kegg Pathways
Pathway information courtesy of Kegg


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.