|
Genome Bioinformatics Abstract
Index
DOE Human Genome
Program
|
Home | Sequencing | Functional Genomics |
Author Index | Sequencing Technologies | Microbial Genome Program |
Search | Mapping | Ethical, Legal, & Social Issues |
Order a copy | Bioinformatics | Infrastructure |
View
all Informatics abstracts, or view individual Informatics abstracts
by clicking on their titles below.
78. The Genome Annotation Collaboration: An Overview Jay R. Snoddy, Morey Parang, Sergey Petrov,
Richard Mural, Manesh Shah, Ying Xu, Sheryl Martin, Phil LoCascio, Kim
Worley1, Manfred Zorn2, Sylvia Spengler2,
Donn Davy2, Chris Overton3, Edward C. Uberbacher,
and the Genome Annotation Consortium
78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank Helen M. Berman1, Gary Gilliland2, Peter Arzberger3, Phil Bourne4, John Westbrook5, Phoebe Fagan6 1Rutgers University
79. Visualization, Navigation, and Query of Genomes: The Genome Channel and Beyond Morey Parang, Richard Mural, Manesh
Shah, Doug Hyatt, Miriam Land, Jay Snoddy, Edward C. Uberbacher, and the
Genome Annotation Consortium
Jay R. Snoddy, Miriam Land, Sheryl
Martin, Morey Parang, Inna Volker, Denise Schmoyer, Manesh Shah, Sergey
Petrov, Edward C. Uberbacher, and the Genome Annotation Consortium
Sergey Petrov, Jay R. Snoddy, Michael
D. Galloway, Sheryl Martin, Miriam Land, Morey Parang, Tom Rowan, Denise
D. Schmoyer, Manesh Shah, Inna E. Vokler, Edward C. Uberbacher, and the
Genome Annotation Consortium
82. Genome Channel Analysis Engine: A System for Automated Analysis of Genome Channel Data Manesh Shah, Morey Parang, Doug
Hyatt, Michael Galloway, Richard Mural, Kim Worley1, Edward
C. Uberbacher, and the Genome Annotation Consortium
83. GRAIL-EXP: Multiple Gene Modeling Using Pattern Recognition and Homology Ying Xu, Manesh Shah, Doug Hyatt, Richard
Mural, Edward C. Uberbacher, and the Genome Annotation
Consortium
84. High-Performance Computing Servers Phil LoCascio, Doug Hyatt, Manesh
Shah, Al Geist, Bill Shelton, Ray Flannery, Jay Snoddy, Edward Uberbacher,
and the Genome Annotation Consortium
85. DOE Joint Genome Institute Public WWW Site Robert D. Sutherland and Linda
Ashworth
86. JGI Informatics and the PSF Network Tom Slezak, Mark Wagner, Lisa Corsetti,
Sam Pitluck, Arthur Kobayashi, Mimi Yeh, Brian Yumae, and Peg Folta
87. Verification of Finished Sequence at JGI-LLNL Karolyn J. Burkhart-Schultz, Amy
M. Brower, Arthur Kobayashi, Matt Nolan, Melissa Ramirez, and Jane E.
Lamerdin
88. Informatics for Production Sequencing at LLNL Arthur Kobayashi, David J. Ow, Matt
P. Nolan, Stephan Trong, Tory Bobo, Tom Slezak, Mark C. Wagner, T. Mimi
Yeh, Lisa Corsetti, Jane Lamerdin, Paula McCready, Evan W. Skowronski,
and Anthony V. Carrano
Peter Cartwright
90. A Simulation Extension of a Workflow-Based LIMS Peter Cartwright
91. A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis Dong-Guk Shin1,
Lung-Yung
Chu1, Lei Liu1, Nori Ravi1, Joseph
Leone2,
Rich Landers2, and Wally Grajewski2
92. Data Visualization for Distributed Bioinformatics Gregg Helt, Suzanna Lewis, Nomi
Harris, and Gerald M. Rubin
93. A Figure of Merit for DNA Sequence Data Mark O. Mundt, Allon G. Percus, and David
C. Torney
Terry Speed, Lei Li, Dave Nelson, and Simon
Cawley
95. The FAKtory Sequence Assembly System Susan J. Miller, Eugene W. Myers,
Kedarnath A. Dubhashi, and Daniel E. Garrison
96. Hidden Markov Models in Biosequence Analysis: Recent Results and New Methods Christian Barrett, Mark Diekhans, Richard
Hughey, Tommi Jaakkola, Kevin Karplus, David Kulp, Stephen Winters-Hilt,
and David Haussler
97. Java Based Restriction Map Display Mark C. Wagner, Jan-Fang Cheng,
Steve Lowry, Robert Sutherland, Norman Doggett, Laurie A. Gordon, and Anne
S. Olsen
Lixin Tang, Jeremy Boulton1,
Benjamin Liau1, Hui Zhang2, Wei Qin3,
Sung Ha Huh1, Yicheng Cao, Robert Xuequn Xu, Glen
George1,
and Ung-Jin Kim
Robert Xuequn Xu, Chang-Su Lim,
Bum-Chan Park, Mei Wang, Jonghyeob Lee, Aaron Rosin, Eunpyo Moon, Melvin
Simon, and Ung-Jin Kim
Michael C. Giddings, Jessica M. Severin,
Michael Westphall, and Lloyd M. Smith
100a. Recent advances in high-throughput genomic sequencing: Magnetic Capture of Plasmids Kevin McKernan, Paul McEwan, Will Morris, Nicole Stange-Thomann,
Imani Torruella-Miller, Andrew Sheridan, Alan Wagner, Dudley Wyman, Boris
Pavlin, James Benn, Eric S. Lander, Lauren Linton
101. Arraydb: CGH-Array Tracking Database Donn Davy, Daniel Pinkel, Donna
Albertson, Steve Clark, Joel Palmer, Don Uber, Arthur Jones, Joe Gray,
and Manfred Zorn
102. BCM Search Launcher -- Analysis of the Genome Sequence Kim C. Worley and Pamela A.
Culpepper
103. Profile
Search
104. Computer Analysis of DNA Sequence Data to Locate SECIS Elements Michael Giddings, Olga Gurvich,
Marla Berry, John Atkins, and Raymond Gesteland
Gary D. Stormo, Samuel Levy, and
Fugen Li
106. Protein Fold Prediction in the Context of Fine-Grained Classifications Inna Dubchak, Chris Mayor, Sylvia
Spengler, and Manfred Zorn
107. Comparative Analyses of Syntenic Blocks Jonathan E. Moore and James A.
Lake
108. Sensitive Detection of Distant Protein Relationships Using Hidden Markov Model Alignment Xiaobing Shi and David J.
States
109. Multiple Sequence Alignment with Confidence Estimates David J. States
Lisa Gu and David States
110a. Expert System for Long-Read Base-Calling in DNA Sequencing by Capillary Electrophoresis Arthur W. Miller and Barry L. Karger
111. Screening for Large-Scale Variations in Human Genome Structure S. MacMillan1, C.
Hott1,
D. Anderson1, E. C. Rouchka2, B. D. Dunford-Shore,
B. Brownstein1, R. Mazzarella2, V. Nowotny2,
and D. J. States2
112. Probabilistic Physical Map Assembly David J. States, Thomas W. Blackwell,
John McCrow, and Volker Nowotny
113. Multi-Resolution Molecular Sequence Classification David J. States, Zhengyan Kan, and
Brian Dunford-Shore
114. PQ Edit--A Web-Based Database Table Editor and the Relational Database Abstraction Layer Brian H. Dunford-Shore and David J.
States
115. Allele Frequency Estimation from Sequence Trace Data David G. Politte, David R. Maffitt, and
David J. States
116. Improved Detection of Single Nucleotide Polymorphisms (SNPs) Scott L. Taylor, Natali Kolker,
and Deborah A. Nickerson
117. The Genome Sequence DataBase (GSDB): Advances in Data Access, Analysis, and Quality C.A. Harger, M. Booker, A. Farmer,
W. Huang, J. Inman, D. Kipart, C Kodira, S. Root, F. Schilkey, J. Schwertfeger,
A. Siepel, M.P. Skupski, D. Stamper, N. Thayer, R. Thompson, J. Wortman,
J.J. Zhuang, and M.M. Harpold
118. Analysis of Ribosomal RNA Sequences by Combinatorial Clustering Poe Xing, Casimir Kulikowski, Ilya
Muchnik, Inna Dubchak, Sylvia Spengler, Manfred Zorn, and Denise Wolf
119. Ribosomal RNA Alignment Using Stochastic Context Free Grammars Michael P.S. Brown
120. Ribosomal Database Project II James R. Cole, B. Maidak, T.G. Lilburn,
B. Li, C.T. Parker, S. Pramanik, G.M. Garrity, T.M. Schmidt, and Jim Tiedje
|