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Microbial Genome Program  
Abstract Index 

DOE Human Genome Program    
Contractor-Grantee Workshop VII   
January 12-16, 1999  Oakland, CA
 
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View all Microbial Genome Program abstracts, or view individual Microbial Genome Program abstracts by clicking on their titles below. 
150. Archaeal Proteomics 
Carol S. Giometti1, Sandra L. Tollaksen1, Xiaoli Liang1 , Michael W. W. Adams2, James F. Holden2, Angeli Menon2, Gerti Schut2, Claudia I. Reich3, Gary J. Olsen3, and John Yates, III4 
1Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, Argonne, IL 60439; 2Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229; 3Department of Microbiology, University of Illinois, Urbana, IL 61801; and 4Department of Molecular Biotechnology, University of Washington, Seattle, WA 98195-7730 
csgiometti@anl.gov 

151. Microbial Genome Sequencing and Analysis at TIGR 

William C. Nierman, Tamara Feldblyum, Rebecca A. Clayton, Robert D. Fleischmann, Owen White, Claire M. Fraser, and J. Craig Venter 
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850 wnierman@tigr.org 

152. Genomics and Engineering of a Radioresistant Bacterium 

Kenneth W. Minton, Kira S. Makarova, Michael J. Daly, Eugene V. Koonin, Hassan Brim, L. Aravind, and Ajay Sharma 
Uniformed Services University of the Health Sciences, Bethesda, MD 20814-4799 kminton@usuhs.mil 

153. Functional Analysis of Deinococcus radiodurans Genomes by Targeted Mutagenesis 

Kwong-Kwok Wong, William B. Chrisler, Lye Meng Markillie, and Richard D. Smith 
Pacific Northwest National Laboratory, Molecular Biosciences, MS P7-56, P.O. Box 999, Richland, WA 99352 
kk.wong@pnl.gov 

154. Complete Genome Sequence of Deinococcus radiodurans 

Owen White, John Heidelburg, Claire Fraser, and J. Craig Venter 
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20855 
owhite@tigr.org 


155. Complete Genome Sequencing of Shewanella putrefaciens 

Rebecca A. Clayton, John Heidelberg, Kenneth Nealson, Eric Gaidos, Alexandre I. Tsapin, James Scott, J. Craig Venter, and Claire M. Fraser 
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850 
NASA Jet Propulsion Lab, 4800 Oak Grove Drive, Pasadena, CA 91109 
rclayton@tigr.org 

156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum 

Sorel Fitz-Gibbon1, Ung-Jin Kim2, Heidi Ladner1, Elizabeth Conzevoy1, Gigi Park2, Karl Stetter3, Jeffrey H. Miller1, and Melvin I. Simon2 
1Department of Microbiology and Molecular Biology Institute, University of California, Los Angeles, California; 2Biology, California Institute of Technology, Pasadena, California; and 3University of Regensberg, Germany 
sorel@mbi.ucla.edu 

157. The Genome Sequence of a Hyperthermophilic Archaeon: Pyrococcus furiosus 

Robert B. Weiss1, Diane Dunn1, Mark Stump1, Raymond Yeh1, Joshua Cherry1, and Frank T. Robb2 
1Dept. of Human Genetics, University of Utah, Salt Lake City, Utah and 2Center of Marine Biotechnology, University of Maryland, Baltimore, Maryland 
bob.weiss@genetics.utah.edu 

158. The Chlorobium tepidum Genome Sequencing Program at TIGR  

Karen A. Ketchum, Matthew D. Cotton, Cheryl Bowman, M. Brook Craven, Tanya Mason, Terrence Shea, William Nierman, and Claire M. Fraser  
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850  
kketchum@tigr.org 

159. Searching for Synteny: A Whole-Genome Comparison of Caenorhabditis elegans with Saccharomyces cerevisiae 

Karen L. Diemer and Kelly A. Frazer 
Genome Sciences Department, Lawrence Berkeley National Laboratory, 1 Cyclotron Road MS 84-171, Berkeley, CA 94720  
kelly@mhgc.lbl.gov 

160. Microbial Genome Sequencing and Comparative Analysis 

D.R. Smith, M. Ayers, R. Bashirzadeh, H. Bochner, M. Boivin, G. Breton, S. Bross, A. Caron, A. Caruso, R. Cook, P. Daggett, L. Doucette-Stamm, J. Dubois, J. Egan, D. Ellston, J. Ezedi, T. Ho, K. Holtham, P. Joseph, M. LaPlante, H-M. Lee, R. Gibson, K. Gilbert, J. Guerin, D. Harrison, J. Hitti, P. Keagle, J. Kozlovsky, G. LeBlanc, W. Lumm, P. Mank, A. Majeski, J. Nölling, D. Patwell, J. Phillips, B. Pothier, S. Prabhakar, D. Qiu, J.N. Reeve1, M. Rossetti, M. Sachdeva, P. Snell, 2P. Soucaille, L. Spitzer, R. Vicaire, K. Wall, Y. Wang, L. Wong, A. Wonsey, K. Weinstock, Q. Xu, and L. Zhang 
1Dept.of Microbiology, The Ohio State University, Columbus, Ohio and 2INSA, Toulose, France; Genome Therapeutics Corp., Waltham, Massachusetts 
doug.smith@genomecorp.com 

161. Genome Sequencing and Analysis 

G. J. Olsen, C. I. Reich, N. C. Kyrpides, J. H. Badger, D. E. Graham, P. J. Haney, L. K. McNeil, G. M. Colón González, A. A. Best, B. P. Kaine, and C. R. Woese 
Department of Microbiology, University of Illinois, Urbana, IL 61801  
carl@ninja.life.uiuc.edu 

162. Use of Suppressive Subtractive Hybridization to Identify Genomic Differences among Enteropathogenic Strains of Yersinia enterocolitica and Yersinia pseudotuberculosis 

Lyndsay Radnedge, Peter Agron, Lisa Glover, and Gary Andersen 
Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, Livermore, California 
andersen2@llnl.gov 

 

163. Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways 

Jizhong Zhou1, Douglas Lies2, Gary Li1, Rebecca Clayton3, Kenneth H. Nealson2, Claire Fraser3, James M. Tiedje4 
1Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831; 2Department of Geology and Planetary Sciences, Jet Propulsion Laboratory and California Institute of Technology, Pasadena, CA 91109; 3The Institute of Genomic Research, Rockville, MD 20850; and 4Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824-1325 
zhouj@ornl.gov 

164. Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments 

Cheryl R. Kuske, Susan M. Barns, John D. Dunbar, Jody A. Davis, and Greg Fisher 
Environmental Molecular Biology Group, LS-7, M888, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, NM 87545 
Kuske@lanl.gov 

165. WIT System: Advantages of Parallel Analysis of Multiple Genomes 

Ross Overbeek, Mark D'Souza, Gordon Pusch, Natalia Maltsev, and Evgeni Selkov 
Argonne National Laboratory, Argonne, Illinois 
maltsev@mcs.anl.gov 

166. Microbial Protein and Regulatory Function Analysis and Database Program 

Temple F. Smith 
BioMolecular Engineering Research Center, Boston University, Boston, Massachusetts 
http://bmerc-www.bu.edu/ 

167. Annotation of Microbial Genomes 

Frank Larimer, Richard Mural, Morey Parang, Manesh Shah, Victor Olman, Inna Vokler, Jay Snoddy, and Edward C. Uberbacher 
Computational Biosciences, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 
fwl@ornl.gov 
http://compbio.ornl.gov 

168. Insights into Evolution from the Thermotoga maritima Genome 

K.E. Nelson, R.A. Clayton, O. White, J.C. Venter, and C.M. Fraser 
The Institute for Genomic Research, Rockville, Maryland 
kenelson@tigr.org