Bioinformatics Abstract Index
DOE Human Genome Program
Contractor-Grantee Workshop VIII
February 27-March 2, 2000 Santa Fe, NM
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Bioinformatics Abstract Index DOE Human Genome Program |
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Infrastructure Ordering Information Abstracts from Past Meetings |
56. Software to Support BAC Mapping Cliff S. Han and Norman A. Doggett 57. Automated Optimization of Expert System for Base-Calling in DNA Sequencing Arthur W. Miller and Barry L. Karger 58. Is Q20 a Sufficient Measure of Quality to Use for DNA Sequencing Process Analysis? D. C. Bruce, M. D. Jones, J. E. Bryant, R. Lobb, J. R. Griffith, M. O. Mundt, N. A. Doggett, and L. L. Deaven
59. Annotation of Draft Genomic Sequence Generated at the JGI Richard Mural, Miriam Land, Frank Larimer, Morey Parang, Manesh Shah, Doug Hyatt, Ed Uberbacher, P. Folta, T. Bobo, Zhengping Huang, and T. Slezak Jay Snoddy, Denise Schmoyer, Kathe Fischer, Gwo-Lin Chen, Miriam Land, Sergey Petrov, Sheryl Martin, Ed Michaud, Bob Barry, Gene Rinchik, Peter Hoyt, Mitch Doktycz , and E. Uberbacher 61. Navigation, Visualization, and Query of Genomes: The Genome Channel and Beyond Morey Parang, Miriam Land, Denise Schmoyer, Jay Snoddy, Doug Hyatt, Richard Mural, and Ed Uberbacher 62. Continuation of the Genome Database Christopher J. Porter, C. Conover Talbot Jr., Jay Snoddy, Ed Uberbacher, and A. Jamie Cuticchia 63. Reconstruction and Annotation of Transcribed Sequences: The TIGR Gene Indices John Quackenbush, Ingeborg Holt, Feng Liang, Geo Pertea, Jonathan Upton, and Thomas S. Hansen 64. An Informatics Framework for Transcriptome Annotation Brian Brunk, Jonathan Crabtree, Mark Gibson, Chris Overton, Debra Pinney, Jonathan Schug, Chris Stoeckert, Jian Wang, Ihor Lemischka, Kateri Moore, and Robert Phillips 65. Protein Domain Dissection and Functional Identification Temple F. Smith, Sophia Zarakhovich, and Hongxian He 66. Finding Remote Protein Homologs Kevin Karplus 67. Multi-Way Protein Folding Classification Using Support Vector Machines and Neural Networks C. H. Q. Ding and I. Dubchak 68. Comparative Analyses of Syntenic Regions using Pattern Filtering Jonathan E. Moore and James Lake 69. Discovery of Distant Regulatory Elements by Comparative Sequence- Based Approaches Inna Dubchak, Chris Mayor, Lior Pachter, Gabriella Cretu, Edward M. Rubin, and Kelly A. Frazer 70. Identification of Novel Functional RNA Genes in Genomic DNA Sequences S.R. Holbrook, C. Mayor, and I. Dubchak Eric Poe Xing, Ilya Muchnik, Denise Wolf, Inna Dubchak, Casimir Kulikowski, Manfred Zorn, and Sylvia Spengler Eric Poe Xing, Ilya Muchnik, Manfred Zorn, and Sylvia Spengler 73. Extensions to the Arraydb Micro-Array LIMS Donn Davy, Daniel Pinkel, Donna Albertson, Gregory Hamilton, Joel Palmer, Donald Uber, Arthur Jones, Joe Gray, and Manfred Zorn
74. Identifying Single Nucleotide Polymorphisms (SNPs) in Human Candidate Genes Deborah A. Nickerson, Scott L. Taylor, and Mark J. Rieder C. J. Bult, J. T. Eppig, J. A. Blake, J. E. Richardson, and J. A. Kadin 76. WIT2 -- An Integrated System for Genetic Sequence Analysis and Metabolic Reconstruction Ross Overbeek, Gordon Pusch, Mark D'Souza, Evgeni Selkov Jr., Evgeni Selkov, and Natalia Maltsev Natalia Maltsev and Mark D'Souza 78. Progress Report on EMP Project Evgeni Selkov, Nadezhda Avseenko, Valentina Dronova, Galina Dyachenko, Aleksandr Elefterov, Milyausha Galimova, Nadezhda Fedotcheva, Maria Fomkina, Tatiana Kharybina, Irina Krestova, Aleksandr Kuzmin, Elena Mudrik, Nikolay Mudrik, Valentina Nenasheva, Valeri Nenashev, Evgeni Nikolaev, Aleksandr Osipov, Lyudmila Pronevich, Anna Rykunova, Aleksey Selkov, Evgeni Selkov, Jr., Vladimir Semerikov, Tatiana Sirota, Anatoly Sorokin, Oleg Stupar', Vadim Ternovsky, and Olga Vasilenko 79. BCM Search Launcher - Providing Distributed, Enhanced Sequence Analysis M. P. McLeod, Z. Yang, and K. C. Worley Manfred D. Zorn and David Demirjian 81. Working Examples of XML in the Management of Genomic Data J. D. Cohn and M. O. Mundt 82. The Genome Database -- Integrating Maps with Sequence Christopher J. Porter, C. Conover Talbot Jr., and A. Jamie Cuticchia 83. A Visual Data-Flow Editor Capable of Integrating Data Analysis and Database Querying Dong-Guk Shin, Ravi Nori, Rich Landers, and Wally Grajewski 84. Annotating DNA with Protein Coding Domains Winston A. Hide, Robert Miller, Gary L. Sandine, and David C. Torney 85. Clustering and Visualizing Yeast Microarray Expression Data Using VxInsight™ George Davidson, Edwina Fuge, and Margaret Werner-Washburne 86. Comprehensive Microbial Genome Display and Analysis Frank Larimer, Doug Hyatt, Miriam Land, Richard Mural, Morey Parang, Manesh Shah, Jay Snoddy, and Ed Uberbacher 87. Infrastructure and Tools for High Throughput Computational Genome Analysis Doug Hyatt, Phil Locascio, Victor Olman, Manesh Shah, and Inna Vokler Miriam Land, Denise Schmoyer, Morey Parang, Jay Snoddy, Sergey Petrov, Richard Mural, and Ed Uberbacher 89. BiSyCLES: Biological System for Cross-Linked Entries Search Michael Brudno, Igor Dralyuk, Sylvia Spengler, Manfred Zorn, and Inna Dubchak
90. Updated ASDB: Database of Alternatively Spliced Genes I. Dralyuk, M. Brudno, M.S. Gelfand, S. Spengler, M. Zorn, and I. Dubchak Terry Speed and Simon Cawley 92. Refreshing Curated Data Warehouses Using XML Susan B. Davidson, Hartmut Liefke, and G. Christian Overton 93. Genome-Scale Protein Structure Prediction in Prochlorococcus europae Genome Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, and Ed Uberbacher 94. The Ribosomal Database Project II: Providing an Evolutionary Framework James R. Cole, Bonnie L. Maidak, Timothy G. Lilburn, Charles T. Parker, Paul R. Saxman, Bing Li, George M. Garrity, Sakti Pramanik, Thomas M. Schmidt, and James M. Tiedje 145. BioInformatics Prototyping Language for Mapping, Sequence Assembly and Data Analysis Bud Mishra 151. Commercialization of the GRAIL EXPTM Gene Discovery System Doug Hyatt, Morey Parang, and Ed Uberbacher 154. A Simulation Extension of a Workflow-based LIMS Gary Lindstrom, T. Richard Bogart, Peter Cartwright, and William Delaney 157. Our Vision for the New Protein Data Bank Helen Berman, John Westbrook, Kyle Burkhardt, Zukang Feng, Shri Jain, Rachel Kramer, Bohdan Schneider, Christine Zardecki, Peter Arzberger, Phil Bourne, John Badger, Helge Weissig, Gary L. Gilliland, Phoebe Fagan, Diane Hancock, Narmada Thanki, and Gregory B. Vasquez |
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The online presentation of this publication is a special feature of the Human Genome Project Information Web site. |