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Tag Freq. Digital Northern SAGE Anatomic Viewer²

TTGGCCAGGA# 22621 DN

Best Gene for Tag

Gene
Symbol Name Database Rank Virtual Tag Classification¹ Accession LT
Viewer Gene Info

C11orf17 Chromosome 11 open reading frame 17 refseq_p5s 94.6% reliable 3' end NM_020642 LTV Gene Info

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Other Gene(s) for Tag

Gene
Symbol Name Database Rank Virtual Tag Classification¹ Accession LT
Viewer Gene Info

refseq_p5s 94.6% reliable 3' end NM_032958 LTV

POLR2J2 Uroplakin-like protein refseq_p5s 94.6% reliable 3' end NM_032959 LTV Gene Info

mgc_p5s 94.0% reliable 3' end BC086857 LTV

DLEU2 Deleted in lymphocytic leukemia 2 (non-protein coding) fl_p5s 92.6% reliable 3' end AF529010 LTV Gene Info

Hs.660056 MRNA; cDNA DKFZp434K152 (from clone DKFZp434K152) fl_p5s 92.6% reliable 3' end AL157461 LTV Gene Info

Hs.654883 CDNA FLJ10952 fis, clone PLACE1000374 fl_p5s 92.6% reliable 3' end BC051746 LTV Gene Info

DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 fl_p5s 92.6% reliable 3' end BC063510 LTV Gene Info

ZNF490 Zinc finger protein 490 fl_sr 89.2% reliable 3' end AB033024 LTV Gene Info

ISLR2 Immunoglobulin superfamily containing leucine-rich repeat 2 fl_sr 89.2% reliable 3' end AB040898 LTV Gene Info

NDUFC2 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa fl_sr 89.2% reliable 3' end AK098173 LTV Gene Info

Hs.528103 CDNA: FLJ23203 fis, clone ADKA02487 fl_p5r 86.6% reliable 3' end AK026856 LTV Gene Info

CEP97 Centrosomal protein 97kDa fl_p5r 86.6% reliable 3' end AL833269 LTV Gene Info

Hs.515337 CDNA clone IMAGE:4827119 fl_p5r 86.6% reliable 3' end BC033328 LTV Gene Info

BNIPL BCL2/adenovirus E1B 19kD interacting protein like mgc_p5s 76.6% internal tag BC027868 LTV Gene Info

CENPC1 Centromere protein C 1 mgc_p5s 76.6% internal tag BC030695 LTV Gene Info

NUP43 Nucleoporin 43kDa mgc_p5s 76.6% internal tag BC065028 LTV Gene Info

SGEF Src homology 3 domain-containing guanine nucleotide exchange factor mgc_p5s 76.6% internal tag BC078655 LTV Gene Info

Hs.125180 Growth hormone receptor refseq_p5s 74.7% internal tag NM_000163 LTV Gene Info

refseq_p5s 74.7% internal tag NM_024647 LTV

GM2A GM2 ganglioside activator mgc_apa 74.4% shorter alternative transcript BC009273 LTV Gene Info

ARHGAP1 Rho GTPase activating protein 1 mgc_apa 74.4% shorter alternative transcript BC018118 LTV Gene Info

Hs.465808 Heterogeneous nuclear ribonucleoprotein M fl_ip 74.4% internally primed site AK022050 LTV Gene Info

EREG Epiregulin refseq_apa 72.6% shorter alternative transcript NM_001432 LTV Gene Info

PIK3C2B Phosphoinositide-3-kinase, class 2, beta polypeptide refseq_apa 72.6% shorter alternative transcript NM_002646 LTV Gene Info

refseq_apa 72.6% shorter alternative transcript NM_017967 LTV

C19orf60 Chromosome 19 open reading frame 60 fl_apa 71.9% shorter alternative transcript AK054670 LTV Gene Info

Hs.11637 Chromosome 21 open reading frame 86 fl_apa 71.9% shorter alternative transcript AK056166 LTV Gene Info

C21orf86 Chromosome 21 open reading frame 86 fl_apa 71.9% shorter alternative transcript AK092222 LTV Gene Info

Hs.288215 CDNA clone IMAGE:3831740 fl_apa 71.9% shorter alternative transcript AK129904 LTV Gene Info

nu_p5r 70.7% internal tag AA128592

nu_p5r 70.7% internal tag AI349809

LOC649553 Similar to chaperonin containing TCP1, subunit 6A nu_p5r 70.7% internal tag DB381791 Gene Info

nu_p5r 70.7% internal tag T89784

refseq_p5r 68.6% internal tag NM_207439 LTV

ATF6 Activating transcription factor 6 fl_sr 68.1% internal tag AB208929 LTV Gene Info

GTPBP10 GTP-binding protein 10 (putative) fl_sr 68.1% internal tag AK093649 LTV Gene Info

MYLK4 Myosin light chain kinase family, member 4 fl_sr 68.1% internal tag AK096893 LTV Gene Info

LOC100128402 Hypothetical protein LOC100128402 fl_sr 68.1% internal tag AK124574 LTV Gene Info

fl_sr 68.1% internal tag AK127292 LTV

Hs.689139 MRNA; cDNA DKFZp686H05115 (from clone DKFZp686H05115) fl_sr 68.1% internal tag BX648259 LTV Gene Info

RNF135 Ring finger protein 135 fl_r 67.3% undefined 3' end AK123549 LTV Gene Info

RAB1B RAB1B, member RAS oncogene family fl_r 67.3% undefined 3' end AK125412 LTV Gene Info

SLC15A1 Solute carrier family 15 (oligopeptide transporter), member 1 fl_r 67.3% undefined 3' end BC096327 LTV Gene Info

nu_p5s 67.3% reliable 3' end AA225935

nu_p5s 67.3% reliable 3' end AV741958

nu_p5s 67.3% reliable 3' end BM742042

nu_p5s 67.3% reliable 3' end BM772918

nu_p5s 67.3% reliable 3' end BX507214

nu_p5s 67.3% reliable 3' end CD724118

Legend

¹ Position of virtual tag relative to the longest reliable sequence in database

²
Tissues only
Cell lines only
Tissues + Cell lines

* Tag maps to other gene(s)

# Highly repetitive tag

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