Projects

GENOMICS AND MOLECULAR APPROACHES TO WHEAT TRAITS Appropriated (D)   Accession Number: 413137

BIOTECHNOLOGICAL ENHANCEMENT OF ENERGY CROPS Appropriated (D)   Accession Number: 408875

AN INTEGRATED DATABASE AND BIOINFORMATICS RESOURCE FOR SMALL GRAINS Appropriated (D)   Accession Number: 413153

ASSOCIATION GENETICS OF BETA-GLUCAN METABOLISM TO ENHANCE OAT AND BARLEY GERMPLASM FOR FOOD AND NUTRITIONAL FUNCTION Reimbursable (R)   Accession Number: 411856

INSERTIONAL MUTAGENESIS OF BRACHYPODIUM DISTACHYON Reimbursable (R)   Accession Number: 412354

DEVELOPMENT OF RESOURCES FOR IMPROVEMENT IN AND COORDINATION OF GRASS CROP SPECIES RESEARCH Specific Cooperative Agreement (S)   Accession Number: 411204

DEVELOPMENT AND COORDINATION OF TRITICEAE GENOMICS RESOURCES Specific Cooperative Agreement (S)   Accession Number: 405327

Publications

The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes - (Peer Reviewed Journal)

Bortiri, E., Coleman-Derr, D., Lazo, G.R., Anderson, O.D., Gu, Y.Q. 2008. The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Research Notes. 1:61.

BatchPrimer3: A high throughput web application for PCR and sequencing primer design - (Peer Reviewed Journal)

You, F.M., Huo, N., Gu, Y.Q., Luo, M., Ma, Y., Hane, D., Lazo, G.R., Dvorak, J., Anderson, O.D. 2008. BatchPrimer3: A high throughput web application for PCR and sequencing primer design. BMC Bioinformatics. 9:253.

Comparative transcriptional and proteomic profiling of bread wheat cultivar and its derived transgenic line over-expressing a low molecular weight glutenin subunit gene in the endosperm - (Peer Reviewed Journal)

Scossa, F., Chingcuanco, D.L., Anderson, O.D., Vensel, W.H., Lafiandra, D., D'Ovidio, R., Masci, S. 2008. Comparative transcriptional and proteomic profiling of bread wheat cultivar and its derived transgenic line over-expressing a low molecular weight glutenin subunit gene in the endosperm. Molecular and Cellular Proteomics. 8(14):2948-2966.

Characterizing the nuclear genome structure of Brachypodium distachyon using BAC end sequences. - (Peer Reviewed Journal)

Huo, N., Lazo, G.R., Vogel, J.P., You, F., Ma, Y., Hayden, D.M., Coleman-Derr, D., Hill, T., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2007. Characterizing the nuclear genome structure of Brachypodium distachyon using BAC end sequences. Functional and Integrative Genomics. 8:135-147.

Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome - (Peer Reviewed Journal)

Gao, S., Gu, Y.Q., Wu, J., Huo, N., Crossman, C., Jia, J., Ren, Z., Anderson, O.D., Xiuying, K. 2007. Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Plant Molecular Biology. 65:189-203.

Expression Patterns in Transgenic Wheats with Elevated Levels of Dx5 and/or Dy10 Glutenin Subunits - (Book/Chapter)

Blechl, A.E., Lin, J.W., Nguyen, S., Dupont, F.M., Vensel, W.H., Chan, R., Anderson, O.D., Bregitzer, P.P., Fiedler, D.J. 2007. Expression Patterns in Transgenic Wheats with Elevated Levels of Dx5 and/or Dy10 Glutenin Subunits. In: George L. Lookhart, Perry K.W. Ng, editors. Gluten Proteins 2006. Minneapolis, MN: AACCI. p. 107-111.

TRANSCRIPTIONAL PROFILING OF WHEAT CARYOPSIS DEVELOPMENT USING CDNA MICROARRAYS - (Peer Reviewed Journal)

Chingcuanco, D., Stamova, B., You, F., Lazo, G., Beckles, D., Anderson, O. 2007. Transcriptional profiling of wheat caryopsis development using cDNA microarrays. Plant Molecular Biology. 63:651-668.

GENO PROFILER: BATCH PROCESSING OF HIGH THROUGHPUT CAPILLARY FINGERPRINTING DATA - (Peer Reviewed Journal)

You, F.M., Luo, M.C., Gu, Y.Q., Lazo, G.R., Thomas, C., McGuire, P.E., Dvorak, J., and Anderson, O.D. 2007. Genoprofiler: Automated processing of high throughput capillary fingerprinting data. Bioinformatics. 23:240-242.

TYPES AND RATES OF SEQUENCE EVOLUTION AT HMW-GLUTENIN LOCUS IN HEXAPLOID WHEAT AND ITS ANCESTRAL GENOMES - (Peer Reviewed Journal)

Gu, Y., Salse, J., Coleman-Derr, D., Dupin, A., Crossman, C., Lazo, G., Huo, N., Belcram, H., Ravel, C., Charmet, G., Charles, M., Anderson, O., Chalhoub, B. 2006. Types and Rates of Sequence Evolution at the HMW-Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes. Genetics. 174:1493-1504.

TRANSGENIC WHEATS WITH ELEVATED LEVELS OF DX5 AND/OR DY10 HIGH-MOLECULAR-WEIGHT GLUTENIN SUBUNITS YIELD DOUGHS WITH INCREASED MIXING STRENGTH AND TOLERANCE - (Peer Reviewed Journal)

Blechl, A.E., Lin, J.W., Nguyen, S., Chan, R., Anderson, O.D., Dupont, F.M. 2007. Transgenic wheats with elevated levels of dx5 and/or dy10 high-molecular-weight glutenin subunits yield doughs with increased mixing strength and tolerance. Journal of Cereal Science. 45:172-183

CONSTRUCTION AND CHARACTERIZATION OF TWO BAC LIBRARIES FROM BRACHYPODIUM DISTACHYPON, A NEW MODEL FOR GRASS GENOMICS - (Peer Reviewed Journal)

Gu, Y., Lazo, G., Vogel, J., Coleman-Derr, D., Luo, M.C., Thilmony, R., Garvin, D., Anderson, O., Huo, N. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 49(9):1099-1108.

ANALYSIS OF THE WHEAT ENDOSPERM TRANSCRIPTOME - (Peer Reviewed Journal)

Chingcuanco, D., Stamova, B., Lazo, G., Cui, X., Anderson, O. 2006. Analysis of the wheat endosperm transcriptome. Journal of Applied Genetics. 47:287-302.

USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).

GRAIN GENES 2.0 - AN IMPROVED RESOURCE FOR THE SMALL-GRAINS COMMUNITY - (Peer Reviewed Journal)

Carollo, V.L., Matthews, D.E., Lazo, G.R., Blake, T.K., Hummel, D., Lui, N., Hane, D.L., Anderson, O.D. 2005. Grain genes 2.0 - an improved resource for the small-grains community. Plant Physiology. 139:643-651.

HYBSWEEPER: A RESOURCE FOR DETECTING HIGH-DENSITY PLATE COORDINATES - (Peer Reviewed Journal)

Lazo, G.R., Lui, N., Gu, Y.Q., Kong, X., Coleman Derr, D., Anderson, O.D. 2005. Hybsweeper: a resource for detecting high-density plate coordinates. Biotechniques. 39:320-324.

EXPRESSION OF AN EXTENDED HMW SUBUNIT IN TRANSGENIC WHEAT AND THE EFFECT ON DOUGH MIXING PROPERTIES - (Peer Reviewed Journal)

He, G.H., Jone, H.D., D'Ovidio, R., Masci, S., Chen, M., West, J., Butow, B., Anderson, O.D., Lasseri, P., Fido, R., Shewry, P. 2005. Expression of an extended hmw subunit in transgenic wheat and the effect on dough mixing properties. Journal of Cereal Science. 42: 225-231.

GRAIN GENES 2.0: RESOURCES FOR SMALL GRAINS BREEDING - (Proceedings/Symposium)

Matthews, D.E., Carollo, V.L., Lazo, G.R., Anderson, O.D. 2005. Grain Genes 2.0: Resources for Small Grains Breeding. Eastern Wheat Workers and Southern Small Grains Workers Conference Proceedings. 1:31-33.

ATOMIC FORCE MICROSCOPY OF A HYBRID HIGH-MOLECULAR-WEIGHT GLUTENIN SUBUNIT FROM A TRANSGENIC HEXAPLOID WHEAT - (Peer Reviewed Journal)

McIntire, T.M., Lew, E.J.L., Adalsteins, A.E., Blechl, A., Anderson, O.D., Brant, D.A., Kasarda, D.D. 2005. Atomic force microscopy of a hybrid high-molecular-weight glutenin subunit from a transgenic hexaploid wheat. Biopolymers. 78(2):53-61.

MICROARRAY ANALYSIS OF TRANSGENIC WHEAT OVER-EXPRESSING A GLUTENIN SUBUNIT RELATED TO TECHNOLOGICAL PROPERTIES. - (Abstract)

Scossa, F., Stamova, B., Chingcuanco, D.L., R'Ovidio, R., Anderson, O.D., Lafiandra, D., Masci, S. 2005. Microarray analysis of transgenic wheat over-expressing a glutenin subunit related to technological properties. Proceedings of the Plant & Animal Genome XIII Conference, January 15-19, 2005, San Diego, CA. p. 241.

A CHROMOSOME BIN MAP OF 16,000 EST LOCI AND DISTRIBUTION OF GENES AMONG THE THREE GENOMES OF POLYPLOID WHEAT - (Peer Reviewed Journal)

Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Ratnasiri, A., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., La Rota, M., Munkvold, J.D., Sorrells, S.F., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Randhawa, H.S., Sandhu, D., Bondareva, S., Gill, K.S., Mahmoud, A., Ma, X., Miftahudin, Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Zhang, D., Nguyen, H.T., Choi, D.W., Close, T.J., Mcguire, P.E., Qualset, C.O., Gill, B.S. 2004. A chromosome bin map of 16,000 est loci and distribution of genes among the three genomes of polyploid wheat. Genetics. 168:701-712.

CHROMOSOME BIN MAP OF EXPRESSED SEQUENCE TAGS IN HOMOEOLOGOUS GROUP 1 OF HEXAPLOID WHEAT AND HOMOEOLOGY WITH RICE AND ARABIDOPSIS - (Peer Reviewed Journal)

Peng, J., Zadeh, H., Lazo, G.R., Gustafson, J.P., Chao, S., Anderson, O.D., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Mahmoud, A., Miftahudin, Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2004. Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and arabidopsis. Genetics. 168:609-623.

A 2500-LOCUS BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 5 PROVIDES INSIGHTS ON GENE DISTRIBUTION AND COLINEARITY WITH RICE - (Peer Reviewed Journal)

Linkiewicz, A.M., Qi, L.L., Gill, B.S., Echalier, B., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Akhunov, E.D., Dvorak, J., Pathan, M.S., Nguyen, H.T., Peng, J., Lapitan, N.V., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2004. A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics. 168:665-676.

A 2600-LOCUS CHROMOSOME BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 2 REVEALS INTERSTITIAL GENE-RICH ISLANDS AND COLINEARITY WITH RICE - (Peer Reviewed Journal)

Wennerlind, E., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Akhunov, E.D., Dubcovsky, J., Peng, J., Lapitan, N.V., Zhang, D., Nguyen, H.T., Miftahudin, Gustafson, J.P., Greene, R.A., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics. 168:625-637.

DELETION MAPPING OF HOMOEOLOGOUS GROUP 6-SPECIFIC WHEAT ESTS - (Peer Reviewed Journal)

Randhawa, H.S., Dilbirligi, M., Sidhu, D., Erayman, M., Sandhu, D., Bondareva, S., Chao, S., Lazo, G.R., Anderson, O.D., Miftahudin, Gustafson, J.P., Echalier, B., Qi, L.L., Gill, B.S., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Sorrells, M.E., Wennerlind, E., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Endo, T.R., Close, T.J., Mcguire, P., Qualset, C.O., Gill, K.S. 2004. Deletion mapping of homoeologous group 6-specific wheat ests. Genetics. 168:677-686.

A CHROMOSOME BIN MAP OF 2148 EST LOCI OF WHEAT HOMOEOLOGOUS GROUP 7 - (Peer Reviewed Journal)

Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Rust, J.L., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L.L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Sidhu, D., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez-Hernandez, J.L., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A chromosome bin map of 2148 est loci of wheat homoeologous group 7. Genetics. 168:687-699.

GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 - (Peer Reviewed Journal)

Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.

ANALYSIS OF EST LOCI ON WHEAT CHROMOSOME GROUP 4 - (Peer Reviewed Journal)

Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Surlan-Momirovic, G., Kim, S., Chema, K., Fang, P., Haule, L., Struxness, H., Birkes, J., Yaghoubian, C., Kinner, R.S., Nguyen, V., Qi, L.L., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Gill, B.S., Gonzalez, J., Wennerlind, E., Anderson, J.A., Choi, D.W., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Nguyen, H.T., Gustafson, J.P. 2004. Analysis of est loci on wheat chromosome group 4. Genetics. 168:651-663.

DEVELOPMENT OF AN EXPRESSED SEQUENCE TAG (EST) RESOURCE FOR WHEAT (TRITICUM AESTIVUM L.): EST GENERATION, UNIGENE ANALYSIS, PROBE SELECTION, AND BIOINFORMATICS FOR A 16,000-LOCUS BIN-DELINEATED MAP - (Peer Reviewed Journal)

Lazo, G.R., Chao, S., Hummel, D.H., Edwards, H., Crossman, C.C., Lui, N., Matthews, D.E., Carollo, V.L., Hane, D., You, F.M., Butler, E., Miller, R., Close, T.J., Peng, J., Lapitan, N.V., Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K.G., Kianian, S.F., Mahmoud, A., Miftahudin, Ma, X., Wennerlind, E.J., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Anderson, O.D. 2004. Development of an expressed sequence tag (est) resource for wheat (triticum aestivum l.): est generation, unigene analysis, probe selection, and bioinformatics for a 16,000-locus bin-delineated map. Genetics. 168:585-593.

CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.

ESTS, CYTOGENETIC STOCKS, AND OTHER TOOLS FOR OAT GENOMICS - (Abstract)

Rines, H.W., Phillips, R.L., Anderson, O.D., Vance, C.P., Crossman, C.C., Lazo, G.R., Miller, S.S., Taller, J. 2004. ESTs, cytogenetic stocks, and other tools for oat genomics [abstract]. In: Peltonen-Sainio, P., Topi-Hulmi, M., editors. Proceedings of the 7th International Oat Conference, July 18-22, 2004, Helsinki, Finland. p. 69.

GENOMIC ORGANIZATION OF THE COMPLEX A-GLIADIN GENE LOCI IN WHEAT - (Peer Reviewed Journal)

Gu, Y.Q., Crossman, C.C., Kong, X., Luo, M., You, F.M., Coleman Derr, D., Dubcovsky, J., Anderson, O.D. 2004. Genomic organization of the complex a-gliadin gene loci in wheat. Theoretical and Applied Genetics. 109:648-657.

CHARACTERIZATION OF GLUTENIN POLYMERS IN A TRANSGENIC BREAD WHEAT LINE OVER-EXPRESSING A LMW-GS. - (Proceedings/Symposium)

Masci, S., D'Ovidio, R., Scossa, F., Patacchini, C., Lafiandra, D., Anderson, O.D., Blechl, A.E. 2004. Characterization of glutenin polymers in a transgenic bread wheat line over-expressing a LNW-GS. Proceedings - 8th Gluten Workshop. 1:10-13

AGRONOMIC, BIOCHEMICAL AND QUALITY CHARACTERISTICS OF WHEATS CONTAINING HMW-GLUTENIN TRANSGENES - (Proceedings/Symposium)

Blechl, A.E., Bregitzer, P.P., O'Brien, K., Lin, J.W., Nguyen, S.B., Anderson, O.D. 2004. Agronomic, biochemical and quality characteristics of wheats containing hmw-glutenin transgenes. Proceedings - 8th Gluten Workshop. p. 6-9.

DYNAMICS AND RAPID GENOME EVOLUTION IN ALLOPOLYPLOID WHEAT AS REVEALED BY COMPARATIVE SEQUENCE ANALYSIS OF THE COMPLEX HMW-GLUTENIN LOCUS REGIONS. - (Peer Reviewed Journal)

Gu, Y.Q., Coleman-Derr, D., Kong, X., Anderson, O.D. 2004. Dynamics and rapid genome evolution in allopolyploid wheat as revealed by comparative sequence analysis of the complex hmw-glutenin locus regions. Plant Physiology. 135:459-470.

SEQUENCING OF TRITICUM MONOCOCCUM HARDNESS LOCUS REVEALS GOOD MICROCOLINEARITY WITH RICE. - (Peer Reviewed Journal)

Chantret, N., Cenci, A., Sabot, F., Anderson, O.D., Dubcovsky, J. 2004. Sequencing of triticum monococcum hardness locus reveals good microcolinearity with rice. Molecular and General Genetics. 271:377-386.

BIOINFORMATICS AND TRITICEAE GENOMICS: RESOURCES AND FUTURE DEVELOPMENTS - (Book/Chapter)

Matthews, D.E., Lazo, G.R., Carollo, V.L., Anderson, O.D. 2004. Bioinformatics and Triticeae Genomics: Resources and Future Developments. In: Gupta, P.K. and Varshney, R.K. (Eds.) Cereal Genomics. Kluwer Academic Publishers, Dordrecht. p. 425-446.

A 2100 EST LOCI MAP OF GROUP 7 CHROMOSOMES OF WHEAT (TRITICUM AESTIVUM L.) - (Abstract)

Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Drake, T., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A 2100 est loci map of group 7 chromosomes of wheat (triticum aestivum l.)[abstract]. XII Plant and Animal Genome Conference. p. 409.

DYNAMICS OF THE EVOLUTION OF ORTHOLOGOUS AND PARALOGOUS PORTIONS OF A COMPLEX LOCUS REGION IN TWO GENOMES OF ALLOPOLYPLOID WHEAT - (Peer Reviewed Journal)

Kong, X., Gu, Y.Q., You, F.M., Dubcovsky, J., Anderson, O.D. 2004. Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat. Plant Molecular Biology. 54:55-69.

PHYSICAL BIN MAP OF EST ON WHEAT HOMOEOLOGOUS GROUP 4 CHROMOSOMES - (Abstract)

Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Momorovic, G.S., Nguyen, H.T., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Dake, T., Sorrells, M.E., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Gustafson, J.P. 2004. Physical bin map of est on wheat homoeologous group 4 chromosomes [abstract]. XII Plant and Animal Genome Conference. p. 407.

CONSTRUCTION OF CONTIGS OF AEGILOPS TAUSCHII GENOMIC DNA FRAGMENTS CLONED IN BAC AND BIBAC VECTORS - (Proceedings/Symposium)

LUO, M., THOMAS, C.S., DEAL, K.R., YOU, F., ANDERSON, O.D., GU, Y.Q., LI, W., KURAPARTHY, V., GILL, B.S., MCGUIRE, P.E. 2003. CONSTRUCTION OF CONTIGS OF AEGILOPS TAUSCHII GENOMIC DNA FRAGMENTS CLONED IN BAC AND BIBAC VECTORS. WHEAT GENETICS INTERNATIONAL SYMPOSIUM PROCEEDINGS. 1:293-296.

SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCUS DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)

Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.

SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCAL DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES. - (Peer Reviewed Journal)

ACKHUNOV, E.D., AKHUNOV, A.R., LINKIEWICZ, A.M., DUBCOVSKY, J., HUMMEL, D., LAZO, G.R., CHAO, S., ANDERSON, O.D., DAVID, J., QI, L. SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCAL DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES. 2003. 100:10836-10841.

GC COMPOSITION AND CODON USAGE IN GENES OF INBREEDING AND OUTCROSSING TRITICEAE SPECIES - (Abstract)

Akhunov, E.D., David, J.L., Chao, S., Lazo, G.R., Anderson, O.D., Qi, L., Echalier, B., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Gc composition and codon usage in genes of inbreeding and outcrossing triticeae species. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 203-206.

A TRANSCRIPTOME MAP OF WHEAT - (Proceedings/Symposium)

Gill, B.S., Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J. 2003. A transcriptome map of wheat. Wheat Genetics International Symposium Proceedings. 1:261-264.

A TWO THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5. - (Proceedings/Symposium)

Linkiewicz, A.M., Qi, L.L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin. 2003. A two thousand loci physical map of wheat homoeologous group 5. Wheat Genetics International Symposium Proceedings. 3:986-988.

A TWO-THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5 - (Abstract)

Linkiewicz, A.M., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Peng, J., Lapitan, N., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2003. A two-thousand loci physical map of wheat homoeologous group 5. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 986-988.

NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings/Symposium)

Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M.C., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D. 2003. New insights into the organization and evolution of wheat genomes. Wheat Genetics International Symposium Proceedings. 1:247-253.

NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings/Symposium)

Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. New insights into the organization and evolution of wheat genomes. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 248-253.

A TRANSCRIPTOME MAP OF WHEAT - (Abstract)

Gill, B.S., Qi, L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermidez-Kandianis, C.E., Greene, R.A., La Rota, M., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Gill, K.S., Miftahudin, Ma, X., Mahmoud, A., Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. A transcriptome map of wheat. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 261-264.

A PHYSICAL MAP OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP I CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract)

Peng, J.H., Zadeh, H., Lazo, G.R., Qi, L., Echalier, B., Gill, B.S., Chao, S., Anderson, O.D., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Miftahudin, Gustafson, J.P., Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2003. A physical map of expressed sequence tags and functional genomics in the group i chromosomes of wheat, triticum aestivum. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p.1035-1037.

COMPARATIVE DNA SEQUENCE ANALYSIS OF WHEAT AND RICE GENOMES - (Peer Reviewed Journal)

SORRELLS, M.E., LA ROTA, M., BERMUDEZ-KANDIANIS, C.E., GREENE, R.A., KANTETY, R., MUNKVOLD, J.D., MIFTAHUDIN, MAHMOUD, A., MA, X., ANDERSON, O.D. COMPARATIVE DNA SEQUENCE ANALYSIS OF WHEAT AND RICE GENOMES. GENOME RESEARCH. 2003. v. 13. p. 1818-1827.

PRODUCTION AND CHARACTERIZATION OF A TRANSGENIC BREAD WHEAT LINE OVER-EXPRESSING A LOW-MOLECULAR WEIGHT GLUTENIN SUBUNIT GENE. - (Peer Reviewed Journal)

MASCI, S., D'OVIDIO, R., SCOSSA, F., PATACCHINI, C., LAFIANDRA, D., ANDERSON, O.D., BLECHL, A.E. PRODUCTION AND CHARACTERIZATION OF A TRANSGENIC BREAD WHEAT LINE OVER-EXPRESSING A LOW-MOLECULAR WEIGHT GLUTENIN SUBUNIT GENE. MOLECULAR BREEDING. 2003. v. 12. p. 209-222.

HIGH-THROUGHPUT FINGERPRINTING OF BACTERIAL ARTIFICIAL CHROMOSOMES USING THE SNAPSHOTTM LABELING KIT AND SIZING OF RESTRICTION FRAGMENTS BY CAPILLARY ELECTROPHORESIS. - (Peer Reviewed Journal)

Luo, M., Thomas, C., You, F.M., Hsiao, J., Ouyang, S., Buell, R.C., Malandro, M., Mcguire, P.E., Anderson, O.D., Dvorak, J. 2003. High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot(tm) labeling kit and sizing of restriction fragments by capillary electrophoresis. Genome Research. 82:378-389.

THE USE OF ESTS TO ANALYZE THE SPECTRUM OF WHEAT SEED PROTEINS - (Proceedings/Symposium)

Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.

CHARTING CONTIG-COMPONENT RELATIONSHIPS WITHIN THE TRITICEAE : EXPLOITING THE GENOME (CHAPTER 8). - (Book/Chapter)

Lazo, G.R., Lui, N., You, F., Hummel, D., Chao, S., Anderson, O.D. 2005. Charting contig-component relationships within the triticeae: exploiting the genome (Chapter 8). Genome Exploitation: Data Mining the Genome. Springer Science, New York, NY. p. 109-120

THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)

AKHUNOV, E.D., LAZO, G.R., CHAO, S., ANDERSON, O.D., GUSTAFSON, J.P., WALKER-SIMMONS, M.K., STEBER, C.M. THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS. GENOME RESEARCH. 2003. V. 13(5). P. 753-763.

EFFECT OF TEMPERATURE ON EXPRESSION OF GENES ENCODING ENZYMES FOR STARCH BIOSYNTHESIS IN DEVELOPING WHEAT ENDOSPERM - (Peer Reviewed Journal)

HURKMAN, W.J., MCCUE,K.F., ALTENBACH, S.B., KORN, A.M., TANAKA, C.K., KOTHARI, K.M., BECHTEL, D.B., WILSON, J.D., ANDERSON, O.D., DUPONT, F.M. EFFECT OF TEMPERATURE ON EXPRESSION OF GENES ENCODING ENZYMES FOR STARCH BIOSYNTHESIS IN DEVELOPING WHEAT ENDOSPERM. PLANT SCIENCE. 2003. 164: 873-881

ASSESSMENT OF THE INSULAR ORGANIZATION OF THE WHEAT D GENOME BY PHYSICAL MAPPING - (Abstract)

DVORAK, J., ANDERSON, O.D., GILL, B.S., LUO, M., ZHANG, H., DEAL, K., LI, W., YOU, F., GU, Y.Q., MCGUIRE, P.E. ASSESSMENT OF THE INSULAR ORGANIZATION OF THE WHEAT D GENOME BY PHYSICAL MAPPING. Annual International Plant & Animal Genome Conference. 2003.

BIN-MAPPING IN WHEAT:TOWARD A PHYSICAL MAP OF WHEAT USING ESTS AND DELETION STOCKS - (Abstract)

Anderson, O.D., Anderson, J.A., Close, T.J., Dubcovsky, J., Dvorak, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N., Nguyen, H., Sorrells, M., Steber, C.M., Mcguire, P.E., Qualset, C.O. 2003. Bin-mapping in wheat:toward a physical map of wheat using ests and deletion stocks. XI Plant and Animal Genome Conference Proceedings, January 11-15, 2003, San Diego, California. p. 84.

DELETION MAPPING OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP 1 CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract)

Peng, J., Zadeh, H., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., Dake, T., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Lapitan, N. 2003. Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, triticum aestivum [abstract]. XI Plant and Animal Genome Conference. p. 164.

EXPRESSED SEQUENCE TAG-BASED GENE EXPRESSION ANALYSIS UNDER ALUMINUM STRESS IN RYE - (Peer Reviewed Journal)

RODRIGUEZ-MILLA, M.A., BUTLER, G.E., RODRIGUEZ-HUETE, A., WILSON, C., ANDERSON, O.D., GUSTAFSON, J.P. EXPRESSED SEQUENCE TAG-BASED GENE EXPRESSION ANALYSIS UNDER ALUMINUM STRESS IN RYE. PLANT PHYSIOLOGY. 2002. v. 130. p. 1706-1716.

THE WHEAT D-GENOME HMW-GLUTENIN LOCUS:BAC SEQUENCING, GENE DISTRIBUTION, AND RETROTRANSPOSON CLUSTERS - (Peer Reviewed Journal) - (17-Jun-02)