CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Mm. Pabpc1, Poly A binding protein, cytoplasmic 1
Sequence ID:NM_008774

Database Links

UniGeneEntrez GeneSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 C

Chromosomal Position (from UCSC)

Chromosomal Position:15: 36529036 - 36530368

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3491915Full LengthBC003870poly A binding protein, cytoplasmic 1
3988101Full LengthBC023145poly A binding protein, cytoplasmic 1
4022169Full LengthBC011207poly A binding protein, cytoplasmic 1
6816124Full LengthBC046233poly A binding protein, cytoplasmic 1
3485544IncompleteBC003928poly A binding protein, cytoplasmic 1
3587950IncompleteBC004587poly A binding protein, cytoplasmic 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032800  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_008774 NP_032800   RRM_1
PABP

Related Sequences

 
mRNAGenPeptSwissProt
BC003870 AAH03870  
BC003928 AAH03928 Q05DT1
BC004587 AAH04587  
BC011207 AAH11207  
BC023145 AAH23145  
BC046233 AAH46233  
AK005009 BAB23742  
AK044829 BAC32110  
AK089747 BAC40951  
AK133196 BAE21553  
AK152064 BAE30919 Q3U8U8
AK159703 BAE35302  
AK159733 BAE35327  
AK160968 BAE36120  
AK161123 BAE36203  
AK161671 BAE36522  
AK168466 BAE40360  
X65553 CAA46522 P29341

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pabpc1 NP_032800 H.sapiens PABPC1 26986 Gene Info NP_002559 100
R.norvegicus Pabpc1 171350   NP_599180 100
A.gambiae AgaP_AGAP011092 1270836   XP_564448 69
D.melanogaster pAbp 37070   NP_476667 62
C.elegans pab-1 172920   NP_001021709 59
S.cerevisiae PAB1 856912   NP_011092 57
S.pombe pabp 2541505   NP_593377 57
P.falciparum PFL1170w 811286   XP_001350640 54
M.grisea MGG_09505 2680542   XP_364660 51
N.crassa NCU04799.1 2706039   XP_324156 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.