CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. SCAND1, SCAN domain containing 1
Sequence ID:NM_016558
NM_033630

Database Links

UniGeneEntrez GeneOMIMSNPViewerAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.1-q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 34004961 - 34005804

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3508136Full LengthBC000785SCAN domain containing 1
3830122Full LengthBC041022SCAN domain containing 1
4620185Full LengthBC036709SCAN domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057642  NP_361012  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_016558 NP_057642 Q6IAG7
P57086
SCAN
NM_033630 NP_361012 Q6IAG7
P57086
SCAN

Related Sequences

 
mRNAGenPeptSwissProt
AF204271 AAF59839 Q6IAG7
P57086
AF207829 AAF66832 Q9NZG6
BC000785 AAH00785 Q6IAG7
P57086
BC036709 AAH36709 Q6IAG7
P57086
BC041022 AAH41022 Q6IAG7
P57086
EU446495 ABZ92024  
CR457188 CAG33469 Q6IAG7
P57086
AM392883 CAL37761  
AM393129 CAL38007  

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCAND1 NP_361012 R.norvegicus Scand1 362252   XP_342559 78
M.musculus Scand1 19018 Gene Info NP_064651 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.