CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. SF4, Splicing factor 4
Sequence ID:NM_172231

Database Links

UniGeneEntrez GeneOMIMSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 19248322 - 19292307

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860435Full LengthBC142988splicing factor 4
2823247IncompleteBC001043splicing factor 4
2823247IncompleteBC002986splicing factor 4
6205595IncompleteBC063784splicing factor 4
40118140IncompleteBC119728splicing factor 4
40118143IncompleteBC119729splicing factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_757386  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_172231 NP_757386 Q8IWZ8 G-patch
Surp

Related Sequences

 
mRNAGenPeptSwissProt
BC063784 AAH63784 Q8IWZ8
BC119728 AAI19729 Q0VDC7
BC119729 AAI19730 Q0VDC7
BC142988 AAI42989 A5PLN4
AY072916 AAL68960 Q8IWZ8
AY072917 AAL68961 Q8IWZ8
AF521128 AAN77123 Q8IWZ8
AK292085 BAF84774 A8K7S0
AK092745 BAG52606 B3KS44
AK294618 BAG57801 B4DGJ0
AK301119 BAG62715 B4DVK3
AL137286 CAB70678 Q8IWZ8
AL713757 CAD28528 Q8IWZ8

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SF4 NP_757386 M.musculus Sf4 70616 Gene Info NP_081757 90
R.norvegicus Sf4 290666   NP_001011920 90
A.gambiae AgaP_AGAP003232 1273906   XP_312940 50
A.gambiae ENSANGG00000014622 1273708   XP_312714 41
D.melanogaster CG31550 40661   NP_730937 38
A.thaliana AT3G52120 824376   NP_566957 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.