CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. GKLP, SCY1-like 1 (S. cerevisiae)
Sequence ID:NM_020680
NM_001048218

Database Links

UniGeneEntrez GeneOMIMSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 65049200 - 65062750

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6581110Full LengthBC069233SCY1-like 1 (S. cerevisiae)
4299750IncompleteBC009967SCY1-like 1 (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065731  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_001048218 NP_001041683    
NM_001134680 NP_001128152    
NM_020680 NP_065731 Q96KG9 HEAT

Related Sequences

 
mRNAGenPeptSwissProt
AF225424 AAG09726 Q96KG9
AF297709 AAG17902 Q96KG9
BC009967 AAH09967 Q96KG9
BC069233 AAH69233 Q96KG9
AB047077 BAB55454 Q96KG9
AB051427 BAB55458 Q96KG9
AB051428 BAB55459 Q96KG9
AK302198 BAG63559  

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCYL1 NP_001041683 R.norvegicus Scyl1 293684   NP_001011938 92
M.musculus Scyl1 78891 Gene Info NP_076401 92
D.melanogaster CG1973 43508   NP_651722 52
A.gambiae AgaP_AGAP001091 1278701   XP_318327 50
C.elegans W07G4.3 179789   NP_506259 40
A.thaliana AT2G40730 818668   NP_181605 36
M.grisea MGG_07285 2683031   XP_367360 34
N.crassa NCU04279.1 2705526   XP_323619 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.