CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. RGPD6, RANBP2-like and GRIP domain containing 5
Sequence ID:NM_001123363
NM_005054
NM_032260

Database Links

UniGeneEntrez GeneSNPViewerAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 109951011 - 109972551

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005045  NP_115636  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_001123363 NP_001116835    
NM_005054 NP_005045 Q53T03 TPR_1
Ran_BP1
GRIP
NM_032260 NP_115636 Q9H0B2 TPR_1

Related Sequences

 
mRNAGenPeptSwissProt
U64675 AAB41848 Q99666
AF012086 AAC05596 O14715
BC148413 AAI48414  
AB209082 BAD92319 Q53T03
AL136868 CAB66802 Q9H0B2
CR936614 CAI56757 O14715
XM_001133591 XP_001133591  
XM_001722279 XP_001722331  

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RGPD5 NP_005045 H.sapiens RGPD6 729540   XP_001133591 100
H.sapiens RGPD8 727851 Gene Info XP_001722331 99
H.sapiens RGPD3 653489 Gene Info XP_935024 96
H.sapiens RGPD4 285190 Gene Info XP_001721351 95
H.sapiens RGPD1 400966 Gene Info NP_001019628 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.