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Bioinformatics
- 123Genomics Genomics, Proteomics and Bioinformatics Knowledge Base
- 1997 Program Report in the DOE Human Genome Project
- 2000 DOE Microbial Genome Report
- 2can Bioinformatics Educational Resource
- ALFRED, ALlele FREquency Database Kidd Lab Frequency Database for releasing frequency data
- Animal Bioinformatics & Research Menu Hubsite
- Best of the Web Genome Databases
- Bibliography on Computational Gene Recognition
- Bielefeld University Bioinformatics Server
- BioBike biology-specific programming language embedded in an integrated biological knowledge-base
- BioBrew Linux open source Linux distribution that is enhanced for life scientists
- BioCatalog software directory of general interest in molecular biology and genetics
- BioInform news service focused exclusively on the global bioinformatics community.
- Bioinformatic resources, University of Otago, Dunedin, New Zealand includes Transterm (tools for translational control elements) and Mlogd (detects overlapping genes)
- Bioinformatics full-text of selected papers in 'bioinformatics' or 'genomics' from Donald Forsdyke, Queen's University, Canada
- Bioinformatics Directory from Google
- Bioinformatics Journal
- Bioinformatics Law Resources Starting Points for Finding Bioinformatics Law Resources on the Internet
- Bioinformatics Links
- Bioinformatics Perl Script Library
- Bioinformatics Research in the Human Genome Project
- BioInformatics Services biotechnology consulting firm
- Bioinformatics World Wide a community maintained website dedicated to Bioinformatics and Computational Biology
- Bioinformatics.org: The Open Lab provides information on free tools
being developed for bioinformatics
research.
- Bioinformatik software, tutorials, databases, literature, technologies, jobs, and resources.
- Bioknoppix customized distribution of Knoppix Linux Live CD targeted for molecular biologists
- BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
- Bioperl Project Perl tools for bioinformatics, genomics and life science research
- Biopython Project an international association of developers of Python tools for computational molecular biology
- BioWarehouse: Database Integration for Bioinformatics
- BMC Bioinformatics Journal
- BRITE database of binary relations for computation and graph comparisons
- Broad Institute fulfulling the promise of genetics for medicine
- Brown Lab, Stanford University, California
- Brutlag Bioinformatics Group located in the Biochemistry
Department at Stanford University
and affiliated with the Stanford
Medical Informatics program
- California Institute for Bioengineering, Biotechnology, and Quantitative Biomedical Research (aka QB3)
- Canadian Bioinformatics Workshops
- Center for Biomolecular Science and Engineering at UC Santa Cruz
- Center for Molecular and Biomolecular Informatics
- Computational Biosciences protein and DNA sequence analysis and annotation
- Computational Molecular Biology At NIH
- Database Mining in the Human Genome
Initiative white paper
- Database Services at EMBL database searching with SRS
- Department of Genome Analysis, GBF
- DNA Data Bank of Japan
- DNALinux Linux distribution with bioinformatics software pre-installed.
- EMBnet - European
Molecular Biology Network
- Ensembl automatic annotation on eukaryotic genomes
- European Bioinformatics Institute Services (EBI) center for research and services in bioinformatics
- GenBank -- National Center for Biotechnology Information
- Genetics from Google
- Genome Channel Genome annotation and analysis
- Genome Sciences Department Lawrence Berkeley National Laboratory
- Genome@home users lend idle computer time to run calculations for research
- Genomics and Bioinformatics Center, Chinese Academy of Sciences
- Genomics Research and Bioinformatics
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Harvard Department of Molecular and Cellular Biology
- ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
- Institute of Biomedical Genomics Research
- International Society for Computational Biology dedicated to advancing the
scientific understanding of living
systems through computation
- Journal of Biomedical Informatics
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- Laboratory for Interdisciplinary Technologies in Bioinformatics (LITBIO) Portal site for bioinformatics
- LAMMPS Molecular Dynamics Simulator
- Molecular Biological Server computer systems, databases and programs for molecular biology
- Molecular Station Molecular biology protocols, bioinformatics
- Mouse Genome Informatics at Jackson Laboratory includes Mouse Genome Database (MGD) and Encyclopedia of the Mouse Genome
- Munich Information Center for Protein Sequences (Mips)
- National Center for Genome Resources
- National Institutes of Health National Human Genome Research Institute
- National Resource for Biomedical Supercomputing (NRBSC)
- NCBI Education tutorials for NCBI's bioinformatics tools
- NIH Center for Molecular Modeling 3-D structure and physiochemical properties
- NIH Funded Grants and Grant History
- Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
- O'Reilly Science Center books
- Personal Genome Project Goal is to develop affordable personal genome sequences and user-friendly applications of such data.
- PRINTS A compendium of protein fingerprints
- Protein Information Resource A Division of National Biomedical
Research Foundation
- Protein Structure Group, Computational Biosciences exploring protein threading, ab initio folding, and classification
- Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
- Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
- Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
- Research Group in Practical Computer Science
- Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
- Sanger Center a genome research centre set up by the Wellcome Trust
- SignalP predicts signal peptides cleavage sites in amino acid sequences
- SocBiN -- Society for Bioinformatics in the Nordic
countries
- South African National Bioinformatics Institute
- Southwest Biotechnology and Informatics Center (SWBIC) links to biotechnology sites
- Stanford Genomic Resources
- Stein Laboratory develops software for computational biology and genome bioinformatics
- Swiss Institute of Bioinformatics
(SIB)
- SWISS-MODEL Automated Comparative Protein Modelling Server
- Telethon Institute for Genetics and Medicine
- TESS: Transcription Element Search System
- U.S. Department of Energy Microbial Genome Program
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- University of Minnesota Computational Biology and Bioinformatics
- University of Pennsylvania Center for Bioinformatics
- University of Pennsylvania's Computational Biology and Informatics Lab
- University of Washington Genome Center
- VigyaanCD electronic workbench for bioinformatics, computational biology and computational chemistry on live Linux CD
- Virginia Tech Bioinformatics Institute
- WEHI (Walter and Eliza Hall Institute of Medical Research) - Melbourne, Australia
- Weizmann Institute of Science:
Genome Science and Bioinformatics
- Wellcome Trust
- XOL Ontology Exchange Language XML-based for bioinformatics ontologies
Biocomputing
Computational Biology
Comparative Genomics
Structural Genomics
Functional Genomics
- BIATECH: Biology - Integration - Analysis - Technology - Environment - Computation - Health independent nonprofit biomedical research center
- Biological Biochemical Image Database searchable database of images of putative biological pathways, macromolecular structures, gene families, and cellular relationships
- Cancer Genome Project
- Comparative and Functional Genomics
- Functional Genomics
- Functional Genomics Jump Station
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Homeobox gene-classification issues and information
- Human Genome Variation Society to foster discovery and characterization of genomic variations including population distribution and phenotypic associations
- HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism
- Korea Research Institute of Bioscience and Biotechnology (KRIBB)
- Merck Genome Research Institute Gene function studies
- MetaCyc: Metabolic Pathway Database describes metabolic pathways, reactions, enzymes, and substrate compounds from multiple organisms
- Microarray Facility, Albert Einstein College of Medicine
of Yeshiva University
- Mouse Atlas and Gene Expression Database Project
- Myc Cancer Gene collection of resources
- NIH Plan for Mouse Genomics and Genetics Resources
- Ovarian Kaleidoscope Database biological function, expression pattern and regulation of genes expressed in the ovary
- Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
- Science Magazine: Functional Genomics
- Systems Biology Pacific Northwest National Laboratory (PNNL)
- The Gene Index Plants, animals, fungi, protist
- Transcription Regulatory Regions Database
- Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
- von Arnim Lab at University of Tennessee
- X-Chromosome Dosage Compensation
Population Genetics
Evolutionary Genomics
Microarray
RNA
Transcriptomics
SNP
Genes
- 1998 Gene Map
- 1999 Gene Map
- Ask the Geneticist Answers questions about genetic concepts, and the etiology, treatment, research, testing, and predisposition to genetic disorders.
- Atlas of Genetics and Cytogenetics in Oncology and Haematology reviews on genes, cytogenetic and clinical entities in cancer, and on cancer-prone diseases; also a portal to databases devoted to genomics and/or cancer
- Beckwith-Wiedemann Support Group
- Behavioral Genetics
- Blazing a Genetic Trail illustrated booklet on hunting for disease genes.
- Breast Cancer Mutation Data Base Open Access On-Line Breast Cancer Mutation Data Base
- BTKBase mutation registry for X-Linked agammaglobulinemia
- Cancer Genome Anatomy Project interdisciplinary program to establish the information and technological tools needed to decipher the molecular anatomy of a cancer cell
- Chromosome Chooser Maps of all human chromosomes with a list of disease genes found on each.
- Computational Molecular Biology
- Congenital Diaphragmatic Hernia Research Advocacy and Support
- Cystic Fibrosis Mutation Data Base Compiled with information collected by the Cystic Fibrosis Genetic Analysis Consortium
- Diabetes Insipidus Foundation
- Environmental Genome Project
- EPConDB information about pancreatic genes
- European Directory of DNA Laboratories (EDDNAL) intended mainly for clinical geneticists and molecular biologists. Contact names and addresses for DNA laboratories and details services on genetic diseases
- Gene Ontology Consortium
- GeneCards Database human genes, products, and involvement in disease
- Generic Model Organism Database Project
- Genes and Genomes Issue The Scientist VOLUME 13, No:15 July 19, 1999
- GeneTests:? medical genetics information resource GeneReviews publication, directory of genetic testing laboratories and diagnosis clinics, and educational materials
- Généthon
- Genetic Alliance non-profit organization dedicated to helping individuals and families who have genetic disorders
- Genetic Disease Information
- Genetic Disorders and Birth Defects - Sri Lanka Collection makes available information about genetic disorders and birth defects most relevant to Sri Lanka
- Genetic Support Groups Directory
- Genetics Home Reference consumer information about genetic conditions and the genes responsible
- GLIMMER a system for finding genes in microbial DNA
- Homeobox gene-classification issues and information
- Homology Maps Page from NCBI
- Human Chromosome Launchpad Links to Research Resources by Chromosome
- Human Gene Mutation Database (HGMD) Provides practical diagnostic information to researchers, diagnosticians, physicians, and genetic counselors
- Human Genome Variation Society aims to foster discovery and characterization of genomic variations
- HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism
- ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
- Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
- JCRB Gene Bank
- List of Human Genes notable genes present in the human genome from Wikipedia
- March of Dimes Birth Defects Information
- Mitochondria Project Database for mitochondria-related genes, proteins and diseases
- Molecular Probe Data Base
- Mountain States Regional Genetic Services Network
- Myc Cancer Gene collection of resources
- National Laboratory for the Genetics of Israeli Populations national repository for human cell lines
- National Organization for Rare Disorders NORD, a nonprofit organization, serves as an international clearinghouse of information on over 5,000 rare disorders
- Nomenclature Committee (HUGO) database of and guidelines for gene symbols and names, related publications
- Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
- Phenylalanine Hydroxylase Locus Database
- RIKEN Bioresource Center DNA Bank cultured animal and plant cell lines, DNA from Tsukuba, Japan
- SERGG: SouthEastern Regional Genetics Group
- Society for the Study of Inborn Errors of Metabolism The aims of the Society are to foster the study of inherited metabolic disorders and related topics
- Support Organization for Trisomy 18, 13 and Other Chromosome Disorders
- UniGene automatically partitions GenBank sequences into non-redundant set of gene-oriented clusters
- Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
- Vysis: Genomic Disease Management develops, commercializes and markets clinical products
- World Health Organization: Genetic techniques
- X-Chromosome Dosage Compensation
- Yahoo's Disabilities List
- Yahoo's Diseases and Conditions List
DNA Structure
Mapping
- 1997 Program Report in the DOE Human Genome Project
- 1998 Gene Map
- 1999 Gene Map
- 2000 DOE Microbial Genome Report
- Centre d'Etude du Polymorphisme Humain
- Computational Molecular Biology
- Cooperative Human Linkage Center (CHLC)
- Department of Genome Analysis, GBF
- DOE and NIH Research Sites
- Exceptional Chromosome Regions II Meeting
- GenAtlas gene, marker, phenotype database
- GeneCards Database human genes, products, and involvement in disease
- Généthon
- Genetic Linkage Analysis
- Genome Channel Genome annotation and analysis
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Homology Maps Page from NCBI
- Human Chromosome Launchpad Links to Research Resources by Chromosome
- Human Genome Center
- IMAGE Consortium Integrated Molecular Analysis of Genomes and their Expression
- Mammalian Genoytping Service (MGS)
- Mapping Research in the Human Genome Project
- MITOMAP A human mitochondrial genome database
- Model Organisms for Biomedical Research National Institutes of Health
- Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
- Molecular Probe Data Base
- National Institutes of Health National Human Genome Research Institute
- NIH Funded Grants and Grant History
- Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
- Polygenic Signaling Pathways lists of genes associated with Alzheimer's disease, Bipolar disorder or Schizophrenia.
- Premier Biosoft International Primer design and vector mapping software
- Radiation Hybrid Database
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
- RIKEN Genomic Sciences Center
- Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
- Telethon Institute for Genetics and Medicine
- U.S. Department of Energy Microbial Genome Program
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
BACs
Sequencing
- Homo sapiens Sequencing
- 1997 Program Report in the DOE Human Genome Project
- 2000 DOE Microbial Genome Report
- Baylor College of Medicine Human Genome Center
- BLAST NCBI's sequence similarity search tool supports analysis of nucleotide and protein databases.
- Broad Institute fulfulling the promise of genetics for medicine
- CELERA
- Completely Sequenced Genomes Rockefeller University
- Computational Biosciences protein and DNA sequence analysis and annotation
- DbBrowser at University of Manchester Bioinformatics Education and Research accesses protein sequence and structure databases
- dbEST Expressed Sequence Tags from a number of organisms.
- DDBJ - DNA Data Bank of Japan (National Institute of Genetics)
- DKFZ (German Cancer Research Center) - Heidelberg, Germany in German
- DNA Sequence and Technology Center Stanford University
- DOE and NIH Research Sites
- Eccles Institute of Human Genetics University of Utah
- EMBL Nucleotide Sequence Database Europe's primary DNA and RNA sequence resource.
- Exceptional Chromosome Regions II Meeting
- ExPASy Molecular Biology Server (SWISS-PROT, etc.) EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
- Gene Codes Corporation Makers of the Sequencher sequence analysis program
- Genome Analysis Pipeline submit sequences via web interface for comprehensive analysis
- Genome Channel Genome annotation and analysis
- Genome Sequencing Centre Jena
- Genomics and Bioinformatics Center, Chinese Academy of Sciences
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Genoscope
- GOLD[TM] Genomes OnLine Database monitors genome sequencing projects
- GRAIL: Gene Recognition and Assembly Internet Link sequencing analysis
- HGVbase (Human Genome Variation database) lists human intra-genic (promoter to transcription end point) DNA sequence polymorphisms.
- Human Chromosome 22: First to be Decoded news release
- Human Chromosome Launchpad Links to Research Resources by Chromosome
- Human Genome Center
- Human Genome Project Progress
- Human Genome Project Working Draft
- Human Genome Project Working Draft Sequence
- IMAGE Consortium Integrated Molecular Analysis of Genomes and their Expression
- ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
- Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
- Japan Science and Technology Corporation ( JST ) Advanced Lifescience Information System ( ALIS )
- JCRB Gene Bank
- Joint Genome Institute Department of Energy sequencing institution
- Kazusa DNA Research Institute
- MAFF DNA Bank Rice and animal genome projects
- Model Organisms for Biomedical Research National Institutes of Health
- National Institutes of Health National Human Genome Research Institute
- NCBI Reference Sequences
- NIH Funded Grants and Grant History
- NIH Genome Sequencing Proposals (2005)
- Nomenclature Committee (HUGO) database of and guidelines for gene symbols and names, related publications
- Nucleic Acid Database (NDB) and Structure Finder
- Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
- PBIL allows browsing through numerous databases and access to many tools for nucleotide or protein sequence analysis
- Personal Genome Project Goal is to develop affordable personal genome sequences and user-friendly applications of such data.
- Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
- Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
- Ribosomal Database Project
- RIKEN Bioresource Center DNA Bank cultured animal and plant cell lines, DNA from Tsukuba, Japan
- RIKEN Genomic Sciences Center
- Sanger Centre Sequencing
- SearchLauncher provides a single point of entry for related WWW search and analysis services
- Seq-Gen: Sequence-Generator application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
- Sequencing Facts
- Sequencing Research in the Human Genome Project
- SignalP predicts signal peptides cleavage sites in amino acid sequences
- SNPs
- Stanford Human Genome Center
- Telethon Institute for Genetics and Medicine
- Trace Archive from NCBI a repository of the raw sequence traces generated by large sequencing projects
- U.S. Department of Energy Microbial Genome Program
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- University of Michigan Sequencing Core
- University of Oklahoma Advanced Center for Genome Technology
- University of Washington Genome Center
- Vertebrate Genome Annotation (VEGA) a central repository for manual annotation of different vertebrate finished genome sequence
- Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
- Washington University Genome Sequencing Center
cDNA
Professional Societies
Conferences
Funding
Links updated 22-Sep-08
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