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Clone Finder
What the Clone Finder Can Do
The Clone Finder allows you to submit a list of UniGene cluster numbers
and get back a corresponding list of IMAGE clones that correspond to each UniGene cluster.
Use the Clone Finder
File Format
- Do NOT mix Hs. and Mm. numbers in one file.
- The text file must list the UniGene numbers in a vertical column like this:
Hs.222 |
Hs.444 |
Hs.666 |
Hs.888 |
BG210741 |
T84477 |
D90040 |
NM_000668 |
63036 |
7051 |
2235 |
1084 |
Clone Selection
Clones are selected in accordance with the following
rules:
- If the cluster contains one or more MGC clones,
then all MGC clones in the cluster will be returned.
- Otherwise, the longest 5'-end clone (if one exists) and the longest 3'-end clone
(if one exists) will be returned.
- In addition to (2) above, if there is a clone that has not been
annotated as being 5' or 3', and if this unannotated clone is longer than either the
longest 5'-end clone or the longest 3'-end clone, then this unannotated clone will be
returned.
- If no IMAGE clone can be identified for the cluster, the cluster number will appear on a line
by itself.
Clone List Results
The list that is returned has four columns:
- Query
- Symbol
- Title
- Cluster number
- GenBank accession number of clone sequence
- IMAGE clone id
- Clone length
- End (5' or 3')
- Type
- "MGC" = Mammalian Gene Collection clone
- "GEN" = General (not MGC)
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