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Rhodobacter capsulatus Genome
Sequencing Project: DENS Technology
Testing Ground
Mugasimangalam Raja, Vincent Molloy, Lev
Lvovsky, James Akowski, Jonathan Schisler,
Yakov Kogan#, Michael Fonstein#, Robert
Haselkorn# and Levy Ulanovsky
Argonne National Laboratory, Argonne, IL
#University of Chicago, Chicago, IL
- Cosmid Sized Templates for DENS
Sequencing Technique
Mugasimangalam Raja*, Vincent Molloy*, Lev
Lvovsky# and Levy Ulanovsky*#
*CMB, Argonne National Laboratory, Argonne, IL
#Weizmann Institute of Science, Rehovot, Israel
- Sequencing of Human Telomeric
Region DNA by Differential Extension
with Nucleotide Subsets (DENS)
Dina Zevin-Sonkin#, Anahit Ghochikyan#, Arthur
Liberzon#, Lev Lvovsky# and Levy Ulanovsky*#
# Dept. of Structural Biology, Weizmann Institute
of Science, Rehovot, ISRAEL
* CMB, Argonne National Laboratory, Argonne, IL
- Primer Walking Through Alu Repeats
Using DENS Sequencing Technique
Dina Zevin-Sonkin#, Anahit Ghochikyan#, Arthur
Liberzon#, Lev Lvovsky#, and Levy Ulanovsky*#
#Weizmann Institute of Science, Rehovot, Israel
*CMB, Argonne National Laboratory, Argonne, IL
- Structural Insights into the Properties of DNA
Polymerases Important for
DNA Sequencing
Stanley Tabor, Sylvie Doublié, Tom Ellenberger and Charles Richardson
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical
School, Boston, MA 02115
- Semiautomated Mutagenesis and Screening of
T7 RNA Polymerases
Mark W. Knuth, Scott A. Lesley, and Heath E. Klock
Promega Corporation 2800 Woods Hollow Road, Madison, WI 53597
- Vectors and Biochemistry for Sequencing by
Nested Deletions
John J. Dunn and Matthew Randesi
Biology Department, Brookhaven National
Laboratory, Upton, New York 11973
- Trapping of DNA in Non-Uniform
Oscillating Electric Fields
Charles L. Asbury, Ger van den Engh
Department of Molecular Biotechnology,
University of Washington, Seattle, WA 98105
- Energy Transfer Fluorescent Primers
Optimized for DNA Sequencing and
Diagnostics
Su-Chun Hung*, Yiwen Wang**, Richard A.
Mathies** and Alexander N. Glazer
Departments of Molecular and Cell Biology* and
Chemistry**, University of California, Berkeley, CA 94720
- Direct PCR Sequencing with Boronated
Nucleotides
Kenneth W. Porter, Dima Sergueev, Ahmad
Hasan, J. David Briley and Barbara Ramsay Shaw
Department of Chemistry, Duke University, Durham, NC 27708
- Advances in DNA Analysis Using
Capillary Array Electrophoresis
Indu Kheterpal, James R. Scherer, William W. Ja,
Yiwen Wang and Richard A. Mathies
Department of Chemistry, University of California,
Berkeley, CA 94720
- Development of a Low Cost, High
Throughput, Four Color DNA Sequencer
Michael S. Westphall, David R. Rank and Lloyd M. Smith
University of Wisconsin-Madison, Department of
Chemistry, 1101 University Ave., Madison, WI 53706
- Multiplexed Integrated On-line System
for DNA Sequencing by Capillary
Electrophoresis: From Template to
Called Bases
Edward S. Yeung* and Hongdong Tan
Ames Laboratory-USDOE and Department of
Chemistry, Iowa State University, Ames, IA 50011
- Production Sequencing Evaluation of a
Nearly Automated 96-Capillary Array
DNA Sequencer Developed at LBNL
Jian Jin, William F. Kolbe, Yunian Lou and Earl W. Cornell
Ernest Orlando Lawrence Berkeley National
Laboratory, University of California, Engineering
Science Department, Human Genome Group,
1 Cyclotron Road, Berkeley, CA 94720
- DNA Sequencing by Capillary
Electrophoresis from Sample
Preparation to Resulting Sequence: A
Robust High Throughput Procedure
with Long Read Length
Salas-Solano, O., Carrilho, E., Ruiz-Martinez1,
M.C., Goetzinger2, W., Kotler, L., Sosic, Z., and
Karger, B.L.
Barnett Institute and Department of Chemistry,
Northeastern University, Boston, MA, 02115
- A Fully Automated 96-Capillary DNA
Sequencer
Qingbo Li, Thomas E. Kane, Changsheng Liu,
John Kernan, and James R. Hoyland
Premier American Technologies Corp.
- Development of a Microchannel Based DNA
Sequencer
Courtney Davidson, Joseph Balch, Larry Brewer,
Joe Kimbrough, Steve Swierkowski, David Nelson,
Ramkrishna Madabhushi, Ron Pastrone, Ann Lee,
Paula McCready, Aaron Adamson, Bob Bruce,
Ray Mariella, and Anthony Carrano
Lawrence Livermore National Laboratory, Human Genome Center
- Microchannel Process Development
and Fabrication for DNA Sequencing
Steve Swierkowski, Joseph Balch, Courtney
Davidson, and Lisa Tarte
Lawrence Livermore National Laboratory, Human Genome Center
- An Optical Trigger for Locating Microchannel
Position
Laurence R. Brewer, Joseph Kimbrough,
Courtney Davidson, and Joseph Balch
Lawrence Livermore National Laboratory, Human Genome Center
- Multiple Capillary DNA Sequencer
Illuminated by a Waveguide
Mark A. Quesada, Harbans S. Dhadwal, David J.
Fisk, Janine S. Graves and F. William Studier
Biology Department, Brookhaven National
Laboratory, Upton, New York 11973
- Technology Development and Informatics
Tools for Genome Sequencing
E.R. Mardis, L. Hillier, A. Chinwalla, M. Cook, M. Holman, G. Marth, R.
McGrane, D.A. Panussis, D.C. Peluso, L.L. Rifkin, J.E. Snider, J. Strong, E. Stuebe, R.H.
Waterston, M. Wendl, R.K. Wilson
Washington University School of Medicine, Genome Sequencing Center, St. Louis, MO
63108
- Single Molecule DNA Sequencing
Hong Cai, Peter M. Goodwin, James H. Jett,
Richard A. Keller, Nicholas P. Machara, Susan
L. Riley, and David J. Semin
Los Alamos National Laboratory, Los Alamos, New Mexico 87545
- On the Road to Rapid Exonuclease
Screening for DNA Sequencing
Hong Cai, # Susan L. Riley, # Kristina
Kommander, * John Nolan, * Richard A. Keller#
Los Alamos National Laboratory, Chemical
Science and Technology# and Life Sciences*
- Sizing of Individual DNA
Fragments
Zhengping Huang, Yongseong Kim, Jonathan L.
Longmire, Nancy C. Brown, James H. Jett and
Richard A. Keller
Los Alamos National Laboratory, Los Alamos,
New Mexico 87545
- Single Molecule DNA Detection in
Microfabricated Capillary
Electrophoresis Chips
Brian B. Haab and Richard A. Mathies
Department of Chemistry, University of California, Berkeley, CA 94720
- Sizing Megadalton DNA by Mass
Spectrometry
W. Henry Benner
LBNL, 1 Cyclotron Road, Berkeley, CA 94720
- Evaluation of New Membrane Surfaces
for Chemiluminescent Assays
Christopher S. Martin, Jing Ying Lee, Betty Liu,
Jeffrey Shumway, John C. Voyta and Irena Bronstein
Tropix, Inc., 47 Wiggins Ave., Bedford, MA 01730
- Advances in Microfabricated
Integrated DNA Analysis Systems
Adam T. Woolley, Peter C. Simpson, Shaorong
Liu, Kaiqin Lao, Stephen J. Williams, Mary X.
Tang, Lester Hutt, Alexander N. Glazer and Richard A. Mathies
Department of Chemistry and Department of Molecular and Cell Biology, University of
California, Berkeley, CA 94720
- The Flowthrough Genosensor Program
at Oak Ridge National Laboratory
Kenneth Beattie, Mitchel Doktycz, Ming Zhan,
Gabriel Betanzos, William Bryan, John Turner
Oak Ridge National Laboratory, Oak Ridge, TN 37831-6123
- Technical Aspects of Fabrication and
Quantitative Analysis of DNA
Micro-Arrays for Comparative Genomic Hybridization
Damir Sudar, Steve Clark, Ian Poole, Rick Segraves, Stephen Lockett, Arthur
Jones, Donna Albertson, Joe Gray, Daniel Pinkel
Lawrence Berkeley National Laboratory
- Multilabel SERS Gene Probes for DNA
Sequencing
T. Vo-Dinh*, D.L. Stokes1, G.D.
Griffin1,
N. Isola1, J.P. Alarie1, U.J. Kim2, M.I.
Simon1, T. Bunde1
* Corresponding Author; Oak Ridge National Laboratory, Oak Ridge, TN
37831-6101
1 Advanced Monitoring Development Group, Life Sciences Div., Oak Ridge
National Laboratory, Oak Ridge, TN 37831-6101
2 Div. of Biology, Calif. Inst. of Technology, Pasadena, CA 91125
- MicroArray of Gel Immobilized
Compounds
A. Mirzabekov
Joint Human Genome Program: Argonne National Laboratory, U.S.A., and Engelhardt
Institute of Molecular Biology, Moscow
- Flow Cytometry-Based Polymorphism
Detection and Analysis
John P. Nolan, Hong Cai, Kristina Kommander, and P. Scott White
Los Alamos National Laboratory, Life Sciences
Division, Los Alamos, New Mexico 87545
- DNA Characterization by Electrospray
Ionization-Fourier Transform Ion
Cyclotron Resonance Mass Spectrometry
David S. Wunschel, Ljiljana Pasa Tolic, David. C.
Muddiman, James E. Bruce, Steve A. Hofstadler
and Richard D. Smith
Environmental Molecular Sciences Laboratory,
Pacific Northwest National Laboratory, Richland, WA 99352
- Improved Mass Spectrometric Resolution for
PCR Product Size
Measurement
Gregory B. Hurst, Kristal Weaver, and Michelle V. Buchanan
Chemical and Analytical Sciences Division, Oak Ridge National Laboratory, Oak Ridge TN
37831-6365
- Laser Desorption Mass Spectrometry for
Quick DNA Sequencing and Analysis
C. H. Winston Chen, N. I. Taranenko, Y. F. Zhu,
S. L. Allman, V. V. Golovlev and N. R. Isola
Life Science Division, Oak Ridge National
Laboratory, Oak Ridge, TN 37831-6378
- Genome Analysis Technologies
George Church, Martha Bulyk, Sonali Bose,
Chris Harbison, Linxiao Xu, Poguang Wang,
Laura Kutney, T. O'Keeffe, Dereth Phillips
Department of Genetics, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115
- 2'-Fluoro Modified Nucleic Acids:
Polymerase-Directed Synthesis,
Properties, and Stability to Analysis by Matrix-Assisted Laser
Desorption/Ionization Mass Spectrometry
Tetsuyoshi Ono, Mark Scalf, Lloyd M. Smith
University of Wisconsin-Madison Chemistry Dept.
- Progress with Concatenation cDNA
Sequencing
Wei Yu and Richard A. Gibbs
Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030
- Development of a DNA Array System with Focus
on Transcription Pathway Prediction
Trey Ideker, Richard Karp, and Leroy Hood
University of Washington, Department of Molecular Biotechnology, Health Sciences
Building Box 357730, Seattle, WA, 98195
- DNA Sample Manipulation and
Automation
Trevor L. Hawkins1, Laurent Jacotat2 , Mary Pat
Reeve1 and Kevin McKernan2
1 Integrated Genomics Technologies. 800 Research Parkway, Meriden, CT
- Improved Analysis of Comparative Genomic
Hybridization Data by Bivariate Image Analysis
Stefan Burde and Babetta L. Marrone
Los Alamos National Laboratory, Los Alamos, NM 87545
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