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Human Genome News Archive Edition

Vol.10, No.3-4   October 1999 
Available in PDF 
 
In this issue... 

DOE '99 Oakland Highlights
* Meeting Intro
* HGP Progress, Challenges
* Joint Genome Institute
*
JGI Facility Opening
*
Sequencing
*
Device Speeds Sequencing
* Chromosome 19 Genes
* Functional Genomics
* Sample Prep System
* Informatics
* Education & Bioethics
* Microbial Genomes
* Next Meeting Feb. 2000

Genome Project
* Accelerated Timetable
* FY1999 Budgets
* JGI Refits Facility
* Progress

In the News 
* Drosophila Near Completion
* Directors, Researchers Receive Awards
* Chromosomes 21, 22 Near Finish
* Human MHC Region Sequenced
* Mouse Probes Aid Mapping
* Genetic Testing Committee
* DOE Labs & Biomedicine
* Biomedical Engineering Proposals
* Drug Firms Create SNP Resource
* SBIR 1999 Awards
* HUGO News
* 1999 Hollaender Winners

Microbial Genomics 
* EcoCyc Database for E. coli
* Developing EcoCyc
* Thermotoga Sequence
* Clostridium Sequenced
* Microbial Gene Finder
* Neisseria Sequence
* Microbial Web Sites

Ethical, Legal, and Social Issues
* Education, Counseling Foundation
* ELSI Studies
* ELSI Retrospective
* Protecting Privacy

Informatics 
* MGI 2.2 Released
* DNA Repository

Web, Other Resources, Publications 
* Metabolic Pathways
* New Staden Package
* PDB Newsletter
* Polymorphism Database
* Bacterial Protein Database
* DOE BER Publications
* HGP Information Web
* Biotechnology Business Webs
* Behavioral Genetics
* Office of Science Reports
* Articles on Genetics

Funding 
* Genome Research Funding

Meeting Calendars & Acronyms 
* Genome & Biotech Meetings 
* Training Courses & Workshops 
* Acronyms 


*HGN archives & subscriptions 
*HGP Information home

Genome Project

JGI Refits Production Sequencing Facility

MegaBACE DNA Sequencing MachinesAccelerated goals are challenging the major Human Genome Project sequencing centers to restructure and streamline their processes. The Joint Genome Institute (JGI) Production Sequencing Facility is using 84 new high-throughput MegaBACE DNA sequencing machines acquired from Amersham Pharmacia Biotech. These machines use multiple thin "capillary" tubes instead of large flat gels to separate and "read" the DNA sequence. The technology was developed largely with funding from the DOE Human Genome Program and licensed to AP Biotech.

JGI's current sequencing targets are human chromosomes 5, 16, and 19, which together contain about 300 Mb of DNA or about 10% of the entire human genome. Sequencing director Trevor Hawkins reports that as of September20, JGI had produced 31.2 Mb of finished sequence and about 41Mb of draft sequence (see "HGP Sequencing Progress"). The Genome Annotation Consortium is joining with JGI for sequence analysis (see "Informatics" for details), and Stanford University will be part of the finishing effort.


The electronic form of the newsletter may be cited in the following style:
Human Genome Program, U.S. Department of Energy, Human Genome News (v10n3-4).

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