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all Functional Genomics abstracts, or view individual Functional Genomics
abstracts by clicking on their titles below.
121. The Regulatory
Network of a Eukaryote
Matthew N. Ashby, Tod Flak, and
Darren H. Wong
Acacia Biosciences, Inc., 4136 Lakeside
Drive, Richmond, CA 94806
ashbym@acaciabio.com
122. Genomic
Hot Spots for Homologous Recombination
Jerzy Jurka, Jiong Ma, and Sun-Yu
Ng
Genetic Information Research Institute,
1170 Morse Ave., Sunnyvale, CA 94089
jurka@charon.girinst.org
123. Development
and Application of Subtractive Hybridization-Based Approaches to Facilitate
Gene Discovery
Maria de Fatima Bonaldo, Brian Berger,
and Marcelo Bento Soares
The University of Iowa, 451 Eckstein Medical
Research Building, Iowa City, IA 52242
bento-soares@uiowa.edu
124. Generation
of Large-Insert Mouse cDNA Libraries
Lisa Stubbs1, Jimmy
Spearow2,
and Xiaojia Ren1
1DOE Joint Genome Institute
and Human Genome Center, Lawrence Livermore National Laboratory, Livermore,
CA 94550 and 2Section on Neurobiology, Physiology and Behavior,
University of California, Davis, CA 95616
stubbs5@llnl.gov
125. The DOTS
Resource for Gene Expression Analysis and Genome
Annotation
Chris Overton, Brian Brunk, Jonathan
Crabtree, Philip Le, and Jules Milgram
Center for Bioinformatics, University
of Pennsylvania, Philadelphia, Pennsylvania
coverton@pcbi.upenn.edu
126. Web Based
Quality Reporting of Completed DNA
Sequencing
Robert D. Sutherland
Los Alamos National Laboratory, Los Alamos,
New Mexico
rds@lanl.gov
127. IMAGEne
II: EST Clustering and Ranking of I.M.A.G.E. cDNA Clones Corresponding
to Known and Unknown Genes
Peg Folta, Tom Kuczmarski, and Christa
Prange
Lawrance Livermore National Laboratory,
Livermore, California
pfolta@llnl.gov
128. Screening
for Mutant Phenotypes in Mice at ORNL
D.K. Johnson, K.C. Goss, G.S. Sega,
J.C. Schryver, M.J. Paulus, M.N. Ericson, and L.S. Webb
Oak Ridge National Laboratory, P.O. Box
2009, Oak Ridge, TN 37831-8077
1yy@ornl.gov
129. Using Overlapping
Deletions in the Analysis of Recessive
Phenotypes
Yun You, Hanna Chao, Sarah Mentzer,
Rebecca Bergstrom1, and John Schimenti1
Life Sciences Division, Oak Ridge National
Laboratory, PO Box 2009, Oak Ridge, Tennessee 37831-8077
1The Jackson Laboratory, Bar
Harbor, Maine 04609
1yy@ornl.gov
130. Germline
Deletion Complexes in Embryonic Stem Cells for Mapping Gene Function
in Mouse-Human Homology Regions
Edward J. Michaud, Irina Khrebtukova,
Carmen M. Foster, and Tuan Vo-Dinh
Life Sciences Division, Oak Ridge National
Laboratory, P.O. Box 2009, Oak Ridge, TN 37831-8077
michaudej@bio.ornl.gov
131. Mouse Genetics
and Mutagenesis for Functional Genomics: The Chromosome 7 and 15 Mutagenesis
Programs at the Oak Ridge National
Laboratory
E. M. Rinchik, D. A. Carpenter,
E. J. Michaud, Y. You, P. R. Hunsicker, and D. K. Johnson
Life Sciences Division, Oak Ridge National
Laboratory, PO Box 2009, Oak Ridge, Tennessee 37831-8077
rinchikem@ornl.gov
132. Comparative
Analysis of Structure and Function in an Imprinted Region of Proximal
Mouse Chromosome 7 and the Related Region of Human Chromosome
19q13.4
Joomyeong Kim, Anne Bergmann, Xiaochen
Lu, Anne Olsen, Jane Lamerdin, and Lisa Stubbs
Biology and Biotechnology Research Program,
Lawrence Livermore National Laboratory, Livermore, CA 94551 and DOE Joint
Genome Institute
kim16@llnl.gov
133. Differential
Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome
19q13.2 and Mouse Chromosome 7
Mark Shannon1, Elbert
Branscomb1, Loren Hauser2, Anne Olsen1,
Laurie Gordon1, Linda K. Ashworth1, and Lisa
Stubbs1
1Biology and Biotechnology
Research Program, Lawrence Livermore National Laboratory, P.O. Box 808,
L-452, Livermore, CA 94550 and 2Life Sciences Division, Oak
Ridge National Laboratory, P.O. Box 2009, Oak Ridge, TN 37831
shannon8@llnl.gov
134. YAC-ES (Y-ES)
Cell Libraries for In Vivo Analysis of JGI
Sequences
Yiwen Zhu, Veena Afzal, Jan-Fang
Cheng, and Edward Rubin
Department of Genome Sciences, Life Sciences
Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
yzhu@lbl.gov
135. Comparative
Functional Genomics
George M. Church, Pam Ralston, Martha
Bulyk, Abby McGuire, Rob Mitra, Saeed Tavazoie, and Jason Hughes
Department of Genetics, Harvard Medical
School, Boston, Massachusetts
church@arep.med.harvard.edu
136. A Targeted
450 Kb Deletion in Mouse Chromosome 11 Identifies a Novel Gene Dramatically
Impacting on VLDL Triglyceride Production
Yiwen Zhu, Miek Jong, Elaine Gong,
Kelly Frazer, Jan-Fang Cheng, and Eddy Rubin
Department of Genome Sciences, Life Sciences
Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
Yzhu@lbl.gov
137. Identification
and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences
in the Human 5q31 Cytokine Cluster Region
Gabriela Cretu, Webb Miller, Catherine
M. Brion, Jan-Fang Cheng, Christopher H. Martin, William Kimberly, Edward
M. Rubin, and Kelly A. Frazer
Genome Sciences Department, Lawrence Berkeley
National Laboratory, 1 Cyclotron Road MS 84-171, Berkeley, CA 94720
kelly@mhgc.lbl.gov
138. Discovering
the Genes Affected by Schizophrenia Using DNA
Micro-Array
Yang Qiu, Edward M. Rubin, and Jan-Fang
Cheng
Genome Science Department, Lawrence Berkeley
National Lab, 1 Cyclotron Road MS 84-171, Berkeley, CA 94720
yqiu@lbl.gov
139. Gene Expression
in Cardiac Hypertrophy as Measured by cDNA
Microarrays
Carl Friddle, Teiichiro Koga, James
Bristow, and Edward M. Rubin
Lawrence Berkeley National Laboratory,
Berkeley, California
cjfriddle@lbl.gov
140. Genetic
Factors Affecting Globin Switching
Sluan D. Lin, Phil Cooper, Mary
E. Stevens, and Edward M. Rubin
Genome Science Department, Lawrence Berkeley
National Laboratory, One Cyclotron Rd., MS 84-171, Berkeley, CA 94720
slin@mhgc.lbl.gov
141. Resources
for Functional Genomics in Drosophila
Gerald Rubin, Suzanna Lewis, Ling
Hong, Damon Harvey, E. Jay Rehm, Amy Beaton, Peter Brokstein, Guochun Liao,
Erwin Frise, and Allan Spradling
University of California, Berkeley,
California
gerry@fruitfly.berkeley.edu
142. Isolation
of Drosophila DNA Repair Genes
R. Scott Hawley, Kenneth C. Burtis,
and Gerald M. Rubin1
University of California, Davis, California
and 1University of California, Berkeley, California
kcburtis@ucdavis.edu
143. Ribozyme
Gene Delivery for Gene Target Discovery and Functional
Validation
Xinqiang Li, Peter J. Welch, Mark C. Leavitt,
Flossie Wong-Staal, and Jack R. Barber
Immusol, Inc., 3050 Science Park Road,
Second Floor, San Diego, CA 92121
barber@immusol.com
144. Microfabricated
Microfluidic Devices for Proteome
Mapping
R.S. Ramsey, R.S. Foote, R.D. Rocklin,
M.I. Lazar, Y. Liu, and J. M. Ramsey
Chemical and Analytical Sciences Division,
Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN 37831-6142
RamseyJM@ornl.gov
145. Using Phage
Display in Functional Genomics
Peter Pavlik, Rob Segal, Daniele Sblattero,
Vittorio Verzillo, Roberto Marzari, and Andrew Bradbury
Los Alamos National Laboratory, Los Alamos,
New Mexico and Scuola Internazionale Superiore di Studi Avanzati (SISSA),
Trieste, Italy
bradbury@icgeb.trieste.it
146. One Gene
- How Many Proteins?
Raymond F. Gesteland, Chad Nelson,
Mike Giddings, Norma Wills, Jiadong Zhou, Barry Moore, Mike Howard, and
John Atkins
University of Utah, Department of Human
Genetics, Salt Lake City, UT 84112-5330
ray.gesteland@genetics.utah.edu
147. ASDB: Database
of Alternatively Spliced Genes
M. S. Gelfand, I. Dubchak, I. Dralyuk,
and M. Zorn
Institute of Protein Research, Russian
Academy of Sciences, Pushchino, 142292, Russia and National Energy Research
Scientific Computing Center, Lawrence Berkeley National Laboratory, Berkeley,
CA 94720
ildubchak@lbl.gov
148. Prediction
of Protein Structural Domains
Robert Miller1, Winston A.
Hide1,
and David C. Torney2
1South African National
Bioinformatics
Institute, University of the Western Cape and 2Joint Genome
Institute, Los Alamos National Laboratory, Los Alamos, New Mexico
dct@lanl.gov
149. Rapid and
Sensitive Characterization of Proteomes; an Adjunct to the
Genome
Richard D. Smith, Ljiljana Pasa
Tolic, Mary S. Lipton, Pamela K. Jensen, Gordon A. Anderson, and James
E. Bruce
Environmental Molecular Sciences Laboratory,
Mail Stop: K8-98, Pacific Northwest National Laboratory, Richland, WA 99352
dick.smith@pnl.gov
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