Exceptional Chromosome Regions II May 24, 2001 Oakland, California Site Provided by the U.S. Department of Energy

An HGP Program Perspective
Marvin Stodolsky

Agenda

Abstracts

• Exploring TAR cloning for isolation and analysis of exceptional regions of human genome
  Natalay Kouprina, Carl Barrett, and Vladimir Larionov
  • Additional Publications (from PubMed)
    • Abstract: "Closing the gaps on human chromosome 19 revealed genes with a high density of repetitive tandemly arrayed elements," S. H. Leem, N. Kouprina, J. Grimwood, J. H. Kim, M. Mullokandov, Y. H. Yoon, J. Y. Chae, J. Morgan, S. Lucas, P. Richardson, C. Detter, T. Glavina, E. Rubin, J. C. Barrett, and V. Larionov, Genome Res. 2004 Feb;14(2):239-46. Epub 2004 Jan 12.
    • Abstract: "A novel strategy for analysis of gene homologues and segmental genome duplications," V. N. Noskov, S. H. Leem, G. Solomon, M. Mullokandov, J. Y. Chae, Y. H. Yoon, Y. S. Shin, N. Kouprina, and V. Larionov, J Mol Evol. 2003 Jun;56(6):702-10.
    • Abstract: "Segments missing from the draft human genome sequence can be isolated by transformation-associated recombination cloning in yeast," N. Kouprina, S. H. Leem, G. Solomon, A. Ly, M. Koriabine, J. Otstot, E. Pak, A. Dutra, S. Zhao, J. C. Barrett, and V. Larionov, EMBO Rep. 2003 Mar;4(3):257-62.

• Chromosome 19: Sequencing Status and Remaining Problem Regions
  Anne Olsen
• Segmental Duplications: Organization and Impact Within the Current Assembly
  Jeffrey A. Bailey, Amy M. Yavor, Julie E. Horvath, Barbara Trask, and Evan E. Eichler
• Eichler Laboratory
• Gap Closing of Chromosome 16 with Unigene Sequences
  Cliff Han and Norman Doggett
• Chromosome 16 Mapping Data Resources
  Robert D. Sutherland, Cliff S. Han and Norman A. Doggett
• Status Report on Gap Closure of the Human Chromosome 5 BAC Map
  Steve Lowry, Joel Martin, Duncan Scott, and Jan-Fang Cheng
  • PowerPoint Presentation
• Integration of Telomere Sequences with the Draft Human Genome Sequence
  Robert K. Moyzis
  • PowerPoint Presentation
• Challenges to Human Genome Sequencing: Not so Cryptic Duplications and the Genomic Abyss
  Julie R. Korenberg, Xiao-Ning Chen, Pranay Bhattacharyya
• RPCI-11 BES Pairs to Human Genome
  Shaying Zhao
  • PowerPoint Presentation

   

ECR I

Abstracts and References

• Human Telomere Mapping and Sequencing
  R.K.Moyzis, H. Chi, D.L. Grady, and H. Riethman
• One Origin of Man: Primate Evolution Through Genome Duplication
  Julie R. Korenberg, Xiao-Ning Chen, Steve Mitchell, Rajesh Puri, Zheng-Yang Shi and Dean Yimlamai
• Abstract
  Evan E. Eichler
• References for Arabidopsis centromer studies
  Greg Copenhaver & Daphne Pruess
• Abstract
  Gary H. Karpen
• Abstract
  David C. Schwartz
• Reconstruction and Annotation of Transcribed Sequences: The TIGR Gene Indices
  John Quackenbush, Ingeborg Holt, Feng Liang, Geo Pertea, Jonathan Upton, and Thomas S. Hansen
• Direct isolation of a centromeric region from the human Y chromosome by TAR cloning for structural and functional studies
  Natalay Kouprina and Vladimir Larionov
• Nucleic Acid Strands Specific for Binding via Non-Denaturing Triple Helix Formation (TISH) to Centromeric DNAs of Each of the Human Chromosomes and to the DNA Common to the Tips of the Achrocentrics
  Jacques R. Fresco
• References on sequencing through difficult chomosomal regions
  John Dunn
• References on duplicated regions
  Barbara Trask
• Finding Genes in Centromeric Regions of the Genome
  Jim Tucker
  • PowerPoint file

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