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Human Genome Project
Progress In Genome Projects
- Animal Genome Size Database
- Completely Sequenced Genomes Rockefeller University
- DOGS - Database Of Genome Sizes Comprehensive list of estimated genome sizes for different organisms
- Entrez Genome: NCBI Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- GOLD[TM] Genomes OnLine Database monitors genome sequencing projects
- Human Genome Project History
- Human Genome Project Working Draft
- Nature April 2003 Genome Issue
- Nature article "First set of bacterial proteins mapped"
- Nature Genetics: A Ten-Year Retrospective 1992-2002
- Nature web focus: The Human Genome
- Nature's Omics Gateway
- Quick Guide to Sequenced Genomes Sequenced genome projects from the Genome News Network.
- Science April 2003 Genome Issue: Building on the DNA Revolution
- Science Article: "Realizing the Potential of the Genome Revolution: The Genomes to Life Program," Marvin E. Frazier, Gary M. Johnson, David G. Thomassen, Carl E. Oliver, and Aristides Patrinos, Science 300, 290 (2003)
- Science Article: "The Human Genome Project: Lessons from Large-Scale Biology," Francis S. Collins, Michael Morgan, Aristides Patrinos, Science 300, 286 (2003)
- Science February 2001 Genome Issue
- Science October 1996 Genome Issue
- Science October 1997 Genome Issue
- Science October 1998 Genome Issue
- Science October 1999 Genome Issue
- Science October 2001 Genome Issue
- Wellcome Trust: The Human Genome
Genetics and Life Sciences
Protein Research
- Addgene Plasmid Repository for Life Sciences non-profit organization promoting sharing of plasmid constructs
- Biozon a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
- Bloomsbury Centre for Structure Biology
- BoLA Nomenclature Committee information source on the bovine major histocompatibility complex - its genes, proteins and polymorphism.
- BRITE database of binary relations for computation and graph comparisons
- BSM SearchLauncher: Protein secondary structure prediction
- Cambridge Crystallographic Data Center
- CATH: Protein Structure Classification
- Center for Eukaryotic Structural Genomics 3-D structure of proteins encoded by Arabidopsis thaliana
- Comparative and Functional Genomics
- Computational Biosciences protein and DNA sequence analysis and annotation
- Computational Molecular Biology At NIH
- Cytokines Online Pathfinder Encyclopaedia (COPE)
- DbBrowser at University of Manchester Bioinformatics Education and Research accesses protein sequence and structure databases
- DBSubLoc database of protein subcellular localization
- EBI Macromolecular Structure Database European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
- European Bioinformatics Institute (EBI) European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
- ExPASy - Swiss-Prot and TrEMBL protein sequence database and the computer-annotated supplement
- ExPASy Molecular Biology Server (SWISS-PROT, etc.) EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
- Folding@home distributed computing project which studies protein folding, misfolding, aggregation, and related diseases
- Functional Genomics Jump Station
- GeneCards Database human genes, products, and involvement in disease
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Human Mitochondrial Protein Database
- Human Proteome Organisation International group formed to further the understanding of human proteins and to realize the benefits of proteomics by encouraging cooperation among scientific, governmental, and financial communities.
- Human Proteomics Initiative (HPI) Project to annotate all known human sequences to the quality standards of Swiss-Prot, including information on each known protein.
- IMB Jena Image Library of Biological Macromolecules
- iProClass family relationships and structural/functional
features of proteins
- List of enzymes from Wikipedia
- List of proteins and protein complexes from Wikipedia
- MetaCyc: Metabolic Pathway Database describes metabolic pathways, reactions, enzymes, and substrate compounds from multiple organisms
- Mitochondria Project Database for mitochondria-related genes, proteins and diseases
- Molecular Station Molecular biology protocols, bioinformatics
- NHGRI Homeodomain Resource non-redundant protein sequences, 3D structures, and genomic information
- NNPREDICT server Prediction of protein sequence secondary structure
- Nucleic Acid Database (NDB) Project goal is to assemble and distribute structural information about nucleic acids
- PDBSum: Summaries and Structural analysis of PDB data files
- PEDANT: Protein Extraction, Description, and ANalysis Tool
- Peptaibol Database Crystallography Department, Birkbeck College, London
- Pfam - Protein families database of alignments and HMMs protein families database of alignments and HMMs
- PRINTS A compendium of protein fingerprints
- probeBase database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
- PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
- Protein Data Bank (PDB) Repository for 3-D macromolecular structure data
- Protein Science a publication of the Protein Society
- Protein Structure Group, Computational Biosciences exploring protein threading, ab initio folding, and classification
- Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
- Protein Structure Prediction Center
- Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
- ProtoNet offers automatic hierarchical classification of proteins
- proWeb Project protein family documentation
- REBASE[R]: Restriction Enzyme Database information about restriction enzymes and related proteins
- SBASE: A Protein Domain Library
- SearchLauncher provides a single point of entry for related WWW search and analysis services
- Secondary structure assignment database (DSSP) program for DSSP database
- SignalP predicts signal peptides cleavage sites in amino acid sequences
- SRPDB (Signal Recognition Particle Database)
- Structural Classification of Proteins database of structural and evolutionary relationships among proteins
- Swiss Proteomics Society Organization to promote research and education in the science of proteomics in Switzerland and other countries.
- SWISS-MODEL Automated Comparative Protein Modelling Server
- Swiss-Prot Annotated database of protein amino acid sequences.
- Systems Biology Pacific Northwest National Laboratory (PNNL)
- Teresa Head-Gordon Group; Department of Bioengineering; University of California, Berkeley protein folding and structure prediction and modeling aqueous hydration
- The Molecules of Life Simple interactive introduction to laboratory techniques used to understand the structure of protein molecules. For general audiences.
- The Proteome Society Organization to provide worldwide opportunities regarding protein study for education, networking, and information exchange among scientists.
- Transcription Regulatory Regions Database
- Translational Proteomics ProteomicsSURF: disease proteomics and proteomic technologies
- UniProt (Universal Protein Resource) comprehensive catalog of information on proteins
Proteomics
- 123Genomics Genomics, Proteomics and Bioinformatics Knowledge Base
- ABIM Organism Databases links to many different databases
- BIATECH: Biology - Integration - Analysis - Technology - Environment - Computation - Health independent nonprofit biomedical research center
- Biological Biochemical Image Database searchable database of images of putative biological pathways, macromolecular structures, gene families, and cellular relationships
- Brutlag Bioinformatics Group located in the Biochemistry
Department at Stanford University
and affiliated with the Stanford
Medical Informatics program
- Cytokines Online Pathfinder Encyclopaedia (COPE)
- Folding@home distributed computing project which studies protein folding, misfolding, aggregation, and related diseases
- Genomics and Bioinformatics Center, Chinese Academy of Sciences
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Human Mitochondrial Protein Database
- Human Proteome Organisation International group formed to further the understanding of human proteins and to realize the benefits of proteomics by encouraging cooperation among scientific, governmental, and financial communities.
- Human Proteomics Initiative (HPI) Project to annotate all known human sequences to the quality standards of Swiss-Prot, including information on each known protein.
- Munich Information Center for Protein Sequences (Mips)
- probeBase database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
- Prostate Expression Database
- Protein Information Resource A Division of National Biomedical
Research Foundation
- Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
- Proteomics from Google
- Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
- Proteomics World
- proWeb Project protein family documentation
- REBASE[R]: Restriction Enzyme Database information about restriction enzymes and related proteins
- SBASE: A Protein Domain Library
- Swiss Proteomics Society Organization to promote research and education in the science of proteomics in Switzerland and other countries.
- Swiss-Prot Annotated database of protein amino acid sequences.
- Systems Biology Pacific Northwest National Laboratory (PNNL)
- The Proteome Society Organization to provide worldwide opportunities regarding protein study for education, networking, and information exchange among scientists.
Models
Transgenic
Homology
Research Sites
- Australian Genome Research Facility
- Australian National Genomic Information Server
- Baylor College of Medicine Human Genome Center
- Biotechnology Research Information part of the Netherlands Institute for Scientific Information Services
- Broad Institute fulfulling the promise of genetics for medicine
- Brown Lab, Stanford University, California
- Canadian Genetic Diseases Network consortium of genetic scientists and core technology facilities
- Cancer Genome Anatomy Project interdisciplinary program to establish the information and technological tools needed to decipher the molecular anatomy of a cancer cell
- Centre d'Etude du Polymorphisme Humain
- Cold Spring Harbor Laboratory
- Cold Spring Harbor Laboratory Human Genome Sequencing
- Cooperative Human Linkage Center (CHLC)
- Department of Genome Analysis, GBF
- DKFZ (German Cancer Research Center) - Heidelberg, Germany in German
- DNA Sequence and Technology Center Stanford University
- DOE and NIH Research Sites
- EBI Research and Services Groups
- Eccles Institute of Human Genetics University of Utah
- Eleanor Roosevelt Institute at the University of Denver
- European Molecular Biology Laboratory
- Généthon
- Genetics from Google
- GenLink Human Chromosome-Specific Sites
- Genome Canada
- Genome Information Research Center Osaka University
- Genome Sequencing Centre Jena
- GenomeNet
- Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Genoscope
- Howard Hughes Medical Institute major U.S. philanthropic organization that supports research in genetics, cell biology, immunology, structural biology, and neuroscience.
- Human Genome Organisation (HUGO)
- Human Genome Project Research in Progress
- imaGenes continuation of RZPD German Resource Center for Genome Research
- Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
- Institute of Genetics Supports research on the genetic and biochemical basis of health and disease
- Japan Science and Technology Corporation ( JST ) Advanced Lifescience Information System ( ALIS )
- Joint Genome Institute Department of Energy sequencing institution
- Kazusa DNA Research Institute
- Korea Research Institute of Bioscience and Biotechnology (KRIBB)
- M.D. Anderson Cancer Center, Department of Molecular Genetics
- Mammalian Genoytping Service (MGS)
- Max Planck Institute of Molecular Genetics
- Merck Genome Research Institute Gene function studies
- MITOMAP A human mitochondrial genome database
- Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
- National Center for Genome Resources
- National Institutes of Health National Human Genome Research Institute
- National Laboratory for the Genetics of Israeli Populations national repository for human cell lines
- National Resource for Biomedical Supercomputing (NRBSC)
- NIH Center for Molecular Modeling 3-D structure and physiochemical properties
- Oklahoma University
- Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
- Sandia National Laboratories, California
- Sanger Center a genome research centre set up by the Wellcome Trust
- Stanford Genomic Resources
- Stanford Human Genome Center
- Telethon Institute for Genetics and Medicine
- University of Michigan Sequencing Core
- University of Oklahoma Advanced Center for Genome Technology
- University of Pennsylvania Center for Bioinformatics
- University of Victoria, Biology Department
- University of Washington Genome Center
- Utah Genome Center Projects at the center encompass large-scale sequencing, capillary, genotyping, and ELSI.
- Washington University Genome Sequencing Center
- WEHI (Walter and Eliza Hall Institute of Medical Research) - Melbourne, Australia
- Wellcome Trust
- World Health Organization: Genetic techniques
Links updated 19-Sep-08
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