Genetic
Effects of Hatchery Supplementation on Productivity for Naturally Spawning
Salmon
The Problem
![Wild adult steelhead captured in the Selway River, Idaho.](images/streisenbichler1fig2.jpg) |
Wild
adult steelhead captured in the Selway River, Idaho. |
Supplementation is the release of artificially propagated fish to maintain
or increase natural production (through natural spawning by hatchery)
while maintaining the long-term fitness of the target population. Supplementation
has been identified as a major tool for the restoration of salmonids in
the Columbia River system as well as other streams throughout the Pacific
Northwest, yet data suggest that its biological and economic efficacies
may be far less than generally expected. This study evaluates costs and
benefits for alternative sources of broodstock for supplementation, and
tests for domestication in hatchery programs. The study tests for genetic
differences in the migration, growth, and survival of hatchery and wild
steelhead (Oncorhynchus mykiss) and of hatchery and wild spring
chinook salmon (O. tshawytscha) in both natural streams and hatcheries.
Steelhead will be from Idaho's Clearwater River, and spring chinook salmon
from Oregon's Warm Springs River. Results from this study should be extremely
valuable to those planning or managing supplementation or its evaluation
because rigorous quantitative genetic comparisons of hatchery and wild
salmon have been available only for steelhead, and the general applicability
of these data to steelhead as well as other species of salmon has been
seriously challenged.
Objectives
The 5-year research goals of the Fisheries and Aquatic Resources Program
addressed are to: understand relationships between and among aquatic species
habitats; provide science for restoring and maintaining declining species
and their required habitat; and investigate aquatic species diversity.
Objectives for steelhead are:
- Compare the growth and survival of genetically marked offspring from
wild Clearwater River steelhead (W) and from Dworshak National Fish
Hatchery (Dworshak NFH) steelhead (H) rearing in at least two study
streams.
- Compare the growth and survival of genetically marked offspring from
wild Clearwater River steelhead (W) and from Dworshak NFH steelhead
(H) in hatchery ponds.
- Test for selection on the genetic marks (PEPA locus) by comparing
the growth and survival of juvenile fish with the different genotypes
rearing together in the Palouse River drainage and at Dworshak NFH.
-
![Biologists snorkeling to locate and count fish.](images/streisenbichler1fig4.jpg) |
Biologists
snorkeling to locate and count fish. |
Test for an effect of cryopreservation by comparing the growth and survival,
and the response to various stressors of juvenile fish from fresh and
cryopreserved milt.
- Test for effects of size and developmental stage of unfed fry on the
growth and survival of juvenile fish in natural streams and in the hatchery.
Objectives for spring chinook salmon are:
- Compare the growth and survival of genetically marked offspring of
wild fish (W; from Warm Springs River) and hatchery fish (H; from Warm
Springs NFH) rearing together in two study streams.
- Compare the growth and survival of genetically marked offspring from
wild Warm Springs River fish (W) and from hatchery fish (H; Warm Springs
NFH) rearing in hatchery ponds at Warm Springs NFH.
- Test for selection on the
genetic marks (at the sSOD-1 locus) by comparing the growth and survival
of juvenile fish with the different genotypes rearing together in natural
streams and in a hatchery.
Methodology
The methods involve crossing adult fish to produce genetically marked
progeny of hatchery x hatchery, hatchery x wild, and wild x wild parentage.
The different groups of progeny are incubated in identical conditions
in the hatchery until button-up when the groups are mixed together. Mixed
populations are divided; some are released into natural streams, others
are reared in the hatchery. The progeny are sampled before or during their
downstream migration or as returning adults to determine relative growth
and survival of the treatment groups. The relative performances will be
used to infer effects on stock productivity from using offspring of wild
fish in the hatchery and hatchery fish in streams and to design evaluations.
Highlights and Key Findings
4/19/02 - During the past 12 months we have been trapping downstream
migrants and sampling juvenile
![Screw trap for capturing fish as they emigrate from a study stream in Washington.](images/streisenbichler1fig3.jpg) |
Screw
trap for capturing fish as they emigrate from a study stream
in Washington. |
chinook salmon in the Metolius River and
Warm Springs National Fish Hatchery from the final year-class of this
study. Our collaborators (Washington Department of Fish and Wildlife)
have been developing the assays for molecular genetic (microsattelite)
markers that will be used in parental analyses to identify the experimental
cross (HxH, HxW, WxW) for each juvenile sampled. Analysis of data from
previous year-classes and preparation of reports and presentations are
continuing.
4/30/01 - Completed trapping and monitoring of experimental juvenile
steelhead in Idaho, but continue to monitor and evaluate returns of experimental
adult steelhead. Evaluation of reproductive success for returning adult
steelhead was abandoned because only seven adults returned to the study
stream in 2000. Approximately 200 returning adult spring chinook salmon
from the 1996 year-class were sampled from the fisheries and the hatchery
and were genetically assayed to determine relative survival and growth.
Final results must await the return of age-5 adults in 2001; however,
preliminary results indicate
![Weir on a tributary to the Lochsa River, Idaho, for capturing wild adult steelhead.](images/streisenbichler1fig1.jpg) |
Weir
on a tributary to the Lochsa River, Idaho, for capturing wild
adult steelhead. |
that HxH fish survived better after release from the hatchery than did
WxW, and suggest that domestication selection occurs in hatchery programs
for spring chinook salmon. Trapping of 1999 year-class fish for the mark-selection
experiment will be completed within 10 weeks. Adult hatchery salmon (~90)
and wild salmon (~45) were obtained and spawned at Warm Springs National
Fish hatchery to create the experimental crosses for the last year-class
of this study. Thermal marks were induced on the otoliths of the resulting
HxH, HxW, and WxW juveniles. Each family was subdivided, and approximately
one-half of the juveniles (~30,000 of each group) were released into the
Metolius River as button-up fry, and the remainder were rearing together
in ponds at Warm Springs National Fish Hatchery. USGS provided additional
support allowing us to expand the methodology to incorporate DNA-microsatellite
(parentage) analyses so that the identity of experimental fish can be determined
without sacrificing the fish, thereby substantially increasing the accuracy
of our estimates for trapping efficiency and the acceptability of our study
to the public.
3/28/00 - Experimental groups of steelhead are rearing in two natural
streams, and at sea. Experimental groups of spring chinook salmon are
rearing in a stream and in Warm Springs National Fish Hatchery. Preliminary
results indicate genetic differences such that progeny of WxW matings
survive better in streams than do progeny of HxH matings. HxH steelhead
survive and grow better in the hatchery than do WxW steelhead.
2/2/00 - Downstream recoveries of PIT-tagged steelhead smolts after release
from Clearwater Hatchery indicated substantially reduced survival of progeny
from wild fish, compared to progeny from hatchery fish, and intense selection
for "hatchery-type" fish. Recovery rate was positively related to smolt
size, and the HxH fish grew faster in the hatchery than did WxW fish,
but recovery of HxH fish also was greater than recovery of WxW fish of
the same size. Survival of HxH chinook salmon from swim-up to smolt in
![Weir and fish trap for collecting fish emigrating from a study stream in Idaho.](images/streisenbichler1fig5.jpg) |
Weir
and fish trap for collecting fish emigrating from a study stream
in Idaho. |
the Little White Salmon River was only 90% that for WxW salmon, indicating
modest but significant loss of fitness in the hatchery population despite
almost continual gene flow of 10-30% from the wild population. Our mark-selection
studies showed modest but significant selection on the genetic marks for
both steelhead (PEPA) and chinook salmon (sSOD-1); , and the results of
hatchery-wild comparisons must be adjusted for selection on the marks.
Where Are We Headed In 2003
DNA and parentage analyses, data analysis, and report preparation will
continue during FY 2003, and should be complete for all but Objective
II.2 by 2004.
Project Contact
Reg Reisenbichler
U.S. Geological Survey
Western Fisheries Research Center
6505 NE 65th St.
Seattle, WA 98115
Email: reg_reisenbichler@usgs.gov
Phone: 206-526-6282
Fax: 206-526-6654
Publications
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