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Message-ID:  <a05111b00ba02dd9795cb@[169.254.243.120]>
Date:         Thu, 21 Nov 2002 11:26:57 -0800
Reply-To:     ImageJ Interest Group <[log in to unmask]>
Sender:       ImageJ Interest Group <[log in to unmask]>
From:         Nicholas Tippery <[log in to unmask]>
Subject:      saving a recently updated TIFF

Hi,

I was a happy NIHImage user, and when our lab upgraded to OS X (and
for increased programmability) I dipped into ImageJ. I must confess
to no prior knowledge of Java, and my programming style is a
combination of trial-and-error and borrowing code from other people's
programs. I am having trouble saving files, specifically stacks of
8-bit images that I create in the same program and alter just before
saving. I believe I am not passing the fully updated version to the
file saver, because right now the "Flip Horizontally" step applies to
all but the last slice of the stack. I had the same problem before
with the "Paste" step, and I got around that by inserting the "wait"
step. Can someone tell me a more efficient way to save a TIFF stack,
or address my problem with images not being updated before they are
saved? I am embarrassed to send such choppy code, but I have been
unable to find the solution on my own. Thanks for any help.

Nic


             IJ.run("Copy");
             windowManager.setTempCurrentImage(workingStack);
             workingStack.setSlice(k);
             IJ.makeRectangle(0,0,600,400);
             IJ.run("Paste");
           }
           workingStack.updateImage();
           IJ.wait(1800);
           IJ.selectWindow(nowtitle);
IJ.run("Flip Horizontally", "stack");
IJ.wait(800);
try {
           FileOutputStream fos = new FileOutputStream(directory+title);
           BufferedOutputStream bos = new BufferedOutputStream(fos);
FileInfo fi = new FileInfo();
fi = workingStack.getFileInfo();
TiffEncoder te = new TiffEncoder(fi);
DataOutputStream dos = fos;
te.write(dos);
} catch (IOException e) {
IJ.showMessage("XYWriter", ""+e);
return;
}


           workingStack.hide();
         }
       }
       workingImage.hide();
     }
   }
}

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