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IMAGEJ archives – December 2004

Table of contents:

• "Set scale..." of stack/Z dimension? (2 messages)
• "spatial frequencies" with ImageJ?
• 1.33u does RGB to 8 bit conversion different than 1.32j (3 messages)
• 1D Fast Fourier Transform Plugin
• 3D quantitative VOI tools (6 messages)
• 3D Skeletonization
• A bug in Wand.autoOutLine(int x, int y)? (3 messages)
• a Java environment for ImageJ (2 messages)
• about release
• Adjust size suggestion. (2 messages)
• Applet : how open a multiple image with ImageStack
• area calculation: shapes within larger shapes?
• Area Calculator (2 messages)
• AreaCalculator
• auto threshold
• automating freehand roi (3 messages)
• batch EXIF (6 messages)
• black background with arbitrary rotation (2 messages)
• Brain lesion volume (4 messages)
• Clone Tool? (2 messages)
• Comet assay? (2 messages)
• Command line issues (2 messages)
• Command line issues (2)
• Complete lists of DICOM tags
• crop 3D image xyz
• Curve fitting function: Rodbard (3 messages)
• Despeckle ( Thanks)
• Despeckle ? (8 messages)
• Dicom Thumbnail (2 messages)
• error stream (3 messages)
• How can I covert 16bit to 8 bit pixel depth. (3 messages)
• How to .setPixel(int,int) ? (6 messages)
• Hurst coefficient (3 messages)
• ImageJ / super-stacks of multiple DICOM series (2 messages)
• ImageJ cited in a paper
• ImageJ Control of shutter by TTL, RS-232 or USB WIN-XP
• ImageJ Grid Cycloid Arc plugin Release 1_1
• ImageJ undo improvements? (5 messages)
• ImageJ Z series stacks to open in photoshop? (2 messages)
• Java 1.4.2 crash workaround (2 messages)
• Java 1.4.2 crash workaround (SOLVED)
• List of Windows? (2 messages)
• Log Base 10 in ImageJ ? (4 messages)
• LSM Reader incompatible with ij 1.34
• marking objects and computing distances in stacks
• Memory allocation (3 messages)
• More than one paths specified in -Dplugins.dir
• NeuronJ
• New: setting a threshold in a macro.
• Opening compressed DICOM files
• Pixel Array after dilate
• pixel to micrometer (3 messages)
• plot profile question
• Printing Images with ImageJ
• problem with ImageJ in Mac OS X (3 messages)
• Problems installing Scion Java for ImageJ (2 messages)
• putPixel (3 messages)
• Recommendation (2 messages)
• Reversing Stacks and ImageStatistics
• Reversing Stacks ImageStatistics
• Roughness of a curved segment (3 messages)
• run ImageJ with jview (3 messages)
• servlet sanity check (2 messages)
• setbatchmode exception and saving with a suffix (2 messages)
• Setting Threshold Colour in macro (2 messages)
• Sharpen ( again ) (2 messages)
• speed of imageJ execution in linux (2 messages)
• stackWindow/sliceSelector problem
• Strange imageJ behaviour when analyse particles (2 messages)
• Substack Maker (4 messages)
• template matching
• Transform J Rotate
• Update of "Interactive Surface Plot Plugin" available (4 messages)
• Vectors? (2 messages)
• Where is the Equalizer?
• Will ImageJ work? (3 messages)

1. "Set scale..." of stack/Z dimension?
   • "Set scale..." of stack/Z dimension? (20 lines)
   • Re: "Set scale..." of stack/Z dimension? (27 lines)

2. "spatial frequencies" with ImageJ?
   • "spatial frequencies" with ImageJ? (48 lines)

3. 1.33u does RGB to 8 bit conversion different than 1.32j
   • 1.33u does RGB to 8 bit conversion different than 1.32j (49 lines)
   • Re: 1.33u does RGB to 8 bit conversion different than 1.32j (41 lines)
   • Re: 1.33u does RGB to 8 bit conversion different than 1.32j (58 lines)

4. 1D Fast Fourier Transform Plugin
   • 1D Fast Fourier Transform Plugin (42 lines)

5. 3D quantitative VOI tools
   • 3D quantitative VOI tools (36 lines)
   • Re: 3D quantitative VOI tools (43 lines)
   • Re: 3D quantitative VOI tools (75 lines)
   • Re: 3D quantitative VOI tools (68 lines)
   • Re: 3D quantitative VOI tools (82 lines)
   • Re: 3D quantitative VOI tools (72 lines)

6. 3D Skeletonization
   • 3D Skeletonization (59 lines)

7. A bug in Wand.autoOutLine(int x, int y)?
   • A bug in Wand.autoOutLine(int x, int y)? (89 lines)
   • Re: A bug in Wand.autoOutLine(int x, int y)? (63 lines)
   • Re: A bug in Wand.autoOutLine(int x, int y)? (50 lines)

8. a Java environment for ImageJ
   • a Java environment for ImageJ (41 lines)
   • Re: a Java environment for ImageJ (44 lines)

9. about release
   • about release (72 lines)

10. Adjust size suggestion.
    • Adjust size suggestion. (55 lines)
    • Re: Adjust size suggestion. (39 lines)

11. Applet : how open a multiple image with ImageStack
    • Applet : how open a multiple image with ImageStack (70 lines)

12. area calculation: shapes within larger shapes?
    • area calculation: shapes within larger shapes? (34 lines)

13. Area Calculator
    • Area Calculator (48 lines)
    • Re: Area Calculator (36 lines)

14. AreaCalculator
    • AreaCalculator (59 lines)

15. auto threshold
    • auto threshold (52 lines)

16. automating freehand roi
    • automating freehand roi (55 lines)
    • Re: automating freehand roi (72 lines)
    • Re: automating freehand roi (19 lines)

17. batch EXIF
    • batch EXIF (59 lines)
    • Re: batch EXIF (90 lines)
    • Re: batch EXIF (82 lines)
    • Re: batch EXIF (83 lines)
    • Re: batch EXIF (117 lines)
    • Re: batch EXIF (67 lines)

18. black background with arbitrary rotation
    • black background with arbitrary rotation (54 lines)
    • Re: black background with arbitrary rotation (49 lines)

19. Brain lesion volume
    • Brain lesion volume (20 lines)
    • Re: Brain lesion volume (55 lines)
    • Re: Brain lesion volume (49 lines)
    • Re: Brain lesion volume (55 lines)

20. Clone Tool?
    • Clone Tool? (36 lines)
    • Re: Clone Tool? (40 lines)

21. Comet assay?
    • Comet assay? (50 lines)
    • Re: Comet assay? (70 lines)

22. Command line issues
    • Command line issues (55 lines)
    • Re: Command line issues (83 lines)

23. Command line issues (2)
    • Re: Command line issues (2) (102 lines)

24. Complete lists of DICOM tags
    • Complete lists of DICOM tags (55 lines)

25. crop 3D image xyz
    • crop 3D image xyz (28 lines)

26. Curve fitting function: Rodbard
    • Curve fitting function: Rodbard (44 lines)
    • Re: Curve fitting function: Rodbard (53 lines)
    • Re: Curve fitting function: Rodbard (67 lines)

27. Despeckle ( Thanks)
    • Re: Despeckle ( Thanks) (34 lines)

28. Despeckle ?
    • Despeckle ? (36 lines)
    • Re: Despeckle ? (47 lines)
    • Re: Despeckle ? (53 lines)
    • Re: Despeckle ? (98 lines)
    • Re: Despeckle ? (100 lines)
    • Re: Despeckle ? (143 lines)
    • Re: Despeckle ? (47 lines)
    • Re: Despeckle ? (37 lines)

29. Dicom Thumbnail
    • Dicom Thumbnail (18 lines)
    • Re: Dicom Thumbnail (42 lines)

30. error stream
    • error stream (49 lines)
    • Re: error stream (39 lines)
    • Re: error stream (53 lines)

31. How can I covert 16bit to 8 bit pixel depth.
    • How can I covert 16bit to 8 bit pixel depth. (17 lines)
    • Re: How can I covert 16bit to 8 bit pixel depth. (76 lines)
    • Re: How can I covert 16bit to 8 bit pixel depth. (34 lines)

32. How to .setPixel(int,int) ?
    • How to .setPixel(int,int) ? (66 lines)
    • Re: How to .setPixel(int,int) ? (85 lines)
    • Re: How to .setPixel(int,int) ? (114 lines)
    • Re: How to .setPixel(int,int) ? (223 lines)
    • Re: How to .setPixel(int,int) ? (270 lines)
    • Re: How to .setPixel(int,int) ? (52 lines)

33. Hurst coefficient
    • Hurst coefficient (52 lines)
    • Re: Hurst coefficient (81 lines)
    • Re: Hurst coefficient (120 lines)

34. ImageJ / super-stacks of multiple DICOM series
    • ImageJ / super-stacks of multiple DICOM series (33 lines)
    • Re: ImageJ / super-stacks of multiple DICOM series (83 lines)

35. ImageJ cited in a paper
    • ImageJ cited in a paper (66 lines)

36. ImageJ Control of shutter by TTL, RS-232 or USB WIN-XP
    • ImageJ Control of shutter by TTL, RS-232 or USB WIN-XP (42 lines)

37. ImageJ Grid Cycloid Arc plugin Release 1_1
    • ImageJ Grid Cycloid Arc plugin Release 1_1 (74 lines)

38. ImageJ undo improvements?
    • ImageJ undo improvements? (78 lines)
    • Re: ImageJ undo improvements? (67 lines)
    • Re: ImageJ undo improvements? (69 lines)
    • Re: ImageJ undo improvements? (47 lines)
    • Re: ImageJ undo improvements? (47 lines)

39. ImageJ Z series stacks to open in photoshop?
    • ImageJ Z series stacks to open in photoshop? (37 lines)
    • Re: ImageJ Z series stacks to open in photoshop? (56 lines)

40. Java 1.4.2 crash workaround
    • Java 1.4.2 crash workaround (40 lines)
    • Re: Java 1.4.2 crash workaround (60 lines)

41. Java 1.4.2 crash workaround (SOLVED)
    • Re: Java 1.4.2 crash workaround (SOLVED) (63 lines)

42. List of Windows?
    • List of Windows? (43 lines)
    • Re: List of Windows? (40 lines)

43. Log Base 10 in ImageJ ?
    • Log Base 10 in ImageJ ? (35 lines)
    • Re: Log Base 10 in ImageJ ? (49 lines)
    • Re: Log Base 10 in ImageJ ? (43 lines)
    • Re: Log Base 10 in ImageJ ? (49 lines)

44. LSM Reader incompatible with ij 1.34
    • LSM Reader incompatible with ij 1.34 (53 lines)

45. marking objects and computing distances in stacks
    • Re: marking objects and computing distances in stacks (53 lines)

46. Memory allocation
    • Memory allocation (35 lines)
    • Re: Memory allocation (62 lines)
    • Re: Memory allocation (34 lines)

47. More than one paths specified in -Dplugins.dir
    • More than one paths specified in -Dplugins.dir (20 lines)

48. NeuronJ
    • NeuronJ (54 lines)

49. New: setting a threshold in a macro.
    • New: setting a threshold in a macro. (113 lines)

50. Opening compressed DICOM files
    • Opening compressed DICOM files (54 lines)

51. Pixel Array after dilate
    • Pixel Array after dilate (63 lines)

52. pixel to micrometer
    • pixel to micrometer (29 lines)
    • Re: pixel to micrometer (68 lines)
    • Re: pixel to micrometer (56 lines)

53. plot profile question
    • Re: plot profile question (68 lines)

54. Printing Images with ImageJ
    • Printing Images with ImageJ (77 lines)

55. problem with ImageJ in Mac OS X
    • problem with ImageJ in Mac OS X (31 lines)
    • Re: problem with ImageJ in Mac OS X (90 lines)
    • Re: problem with ImageJ in Mac OS X (19 lines)

56. Problems installing Scion Java for ImageJ
    • Problems installing Scion Java for ImageJ (62 lines)
    • Re: Problems installing Scion Java for ImageJ (24 lines)

57. putPixel
    • putPixel (54 lines)
    • Re: putPixel (66 lines)
    • Re: putPixel (41 lines)

58. Recommendation
    • Recommendation (55 lines)
    • Re: Recommendation (76 lines)

59. Reversing Stacks and ImageStatistics
    • Reversing Stacks and ImageStatistics (59 lines)

60. Reversing Stacks ImageStatistics
    • Reversing Stacks ImageStatistics (52 lines)

61. Roughness of a curved segment
    • Roughness of a curved segment (52 lines)
    • Re: Roughness of a curved segment (92 lines)
    • Re: Roughness of a curved segment (49 lines)

62. run ImageJ with jview
    • run ImageJ with jview (89 lines)
    • Re: run ImageJ with jview (92 lines)
    • Re: run ImageJ with jview (137 lines)

63. servlet sanity check
    • servlet sanity check (61 lines)
    • Re: servlet sanity check (84 lines)

64. setbatchmode exception and saving with a suffix
    • setbatchmode exception and saving with a suffix (113 lines)
    • Re: setbatchmode exception and saving with a suffix (144 lines)

65. Setting Threshold Colour in macro
    • Setting Threshold Colour in macro (41 lines)
    • Re: Setting Threshold Colour in macro (54 lines)

66. Sharpen ( again )
    • Sharpen ( again ) (36 lines)
    • Re: Sharpen ( again ) (56 lines)

67. speed of imageJ execution in linux
    • speed of imageJ execution in linux (31 lines)
    • Re: speed of imageJ execution in linux (54 lines)

68. stackWindow/sliceSelector problem
    • stackWindow/sliceSelector problem (81 lines)

69. Strange imageJ behaviour when analyse particles
    • Strange imageJ behaviour when analyse particles (44 lines)
    • Re: Strange imageJ behaviour when analyse particles (77 lines)

70. Substack Maker
    • Substack Maker (43 lines)
    • Re: Substack Maker (39 lines)
    • Re: Substack Maker (73 lines)
    • Re: Substack Maker (92 lines)

71. template matching
    • template matching (48 lines)

72. Transform J Rotate
    • Transform J Rotate (43 lines)

73. Update of "Interactive Surface Plot Plugin" available
    • Update of "Interactive Surface Plot Plugin" available (41 lines)
    • Re: Update of "Interactive Surface Plot Plugin" available (134 lines)
    • Re: Update of "Interactive Surface Plot Plugin" available (153 lines)
    • Re: Update of "Interactive Surface Plot Plugin" available (51 lines)

74. Vectors?
    • Vectors? (75 lines)
    • Re: Vectors? (56 lines)

75. Where is the Equalizer?
    • Where is the Equalizer? (25 lines)

76. Will ImageJ work?
    • Will ImageJ work? (56 lines)
    • Re: Will ImageJ work? (102 lines)
    • Re: Will ImageJ work? (111 lines)

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