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References: <[log in to unmask]>
Content-Type: text/plain; charset="iso-8859-1"
Message-ID:  <01b101c2055e$18d19bd0$390dc4d5@server>
Date:         Mon, 27 May 2002 11:08:41 +0200
Reply-To:     "Dr. Michael D. Abramoff" <[log in to unmask]>
Sender:       ImageJ Interest Group <[log in to unmask]>
From:         "Dr. Michael D. Abramoff" <[log in to unmask]>
Subject:      Re: Surface plots...

Wayne,

thanks for your comments. I am about to finish the surface plots.
Meanwhile I found out that on the ImageJ plugins page, the link to 2D optical flow is dead.
Can you please update the link to
www.isi.uu.nl/people/michael/flowj.htm
Also I made a 3-D optical flow plugin, available as
www.isi.uu.nl/people/michael/flow3j.htm
Maybe you can let me know whether it is okay to include this (only few users yet though).

Regards, Michael.

  ----- Original Message ----- 
  From: Wayne Rasband 
  To: [log in to unmask] 
  Sent: Tuesday, May 21, 2002 8:12 PM
  Subject: Fwd: Surface plots...


  > From: GC <[log in to unmask]>
  > Date: Mon May 20, 2002  07:59:33 AM US/Eastern
  > To: [log in to unmask]
  > Subject: Surface plots...
  >
  > Hi!
  > The procedure described by Michael Abramoff and Tony Collins yields
  > excellent
  > surface plots!!. It may be however easier to generate such surface
  > plots by
  > recording the procedure into a macro. I have recorded a simple macro
  > (plugin) following the instructions and it works fine. Just remember to
  > unmark
  > the "create new window for result" to avoid creating several images.
  >
  > Gary.
  >
  > /************************************************************************
  > **/
  > import ij.*;
  > import ij.process.*;
  > import ij.gui.*;
  > import java.awt.*;
  > import ij.plugin.*;
  >
  > /** Based on the procedure described by Michael Abramoff and Tony
  > Collins. The
  > Transformj, Volumej and Stack Reverser
  > plugins are required.
  >  */
  >
  > public class Surface_plot implements PlugIn {
  >
  >       public void run(String arg) {
  >               IJ.run("8-bit");
  >               IJ.run("Rotate ");              // rotation around the z-axis only
  >                                       file://Mark adjust size to fit result
  >                                       file://Unmark create new window for result
  >               IJ.run("Scale ");               file://Generates a stack containg the number of images
  >                                       file://specified in the Scaling factor in
  > Z-dimension field, try with >50
  > slices
  >                                       file://Unmark create new window for result
  >               IJ.run("Depth Coded Stack");    file://OK
  >               IJ.run("Image Calculator...");  file://Original stack - depth_coded image
  >                                       file://Unmark create new window for result
  >               IJ.run("Stack Reverser");
  >               IJ.run("Volume Renderer");      file://Follows the instructions given
  > by Tony Collins
  >                                       file://http://www.isi.uu.nl/people/michael/surfaceplots.htm
  >       }
  >
  > }
  >
  >
  >

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