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Message-ID:  <[log in to unmask]>
Date:         Wed, 22 May 2002 15:57:01 -0400
Reply-To:     ImageJ Interest Group <[log in to unmask]>
Sender:       ImageJ Interest Group <[log in to unmask]>
From:         Kurt De Vos <[log in to unmask]>
Subject:      Re: batch processing of stacks and saving results
In-Reply-To:  <[log in to unmask]>

Hi, I believe something went wrong with the previous mail.
It should end with: I'll think about a way to get around the saving
problem. Maybe you should just write your own custom particle analyzer
and append a export results method.

Kurt

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[log in to unmask]] On
> Behalf Of Rachel Bearon
> Sent: May 22, 2002 14:50
> To: [log in to unmask]
> Subject: batch processing of stacks and saving results
>
>
> I would like to process all files in a directory and record
> the results. I wrote the following plugin to process one file
> at a time, but I would like to be able to automatically loop
> through all files in the directory. In the archives I found
> reference to a method for opening and processing all files in
> a directory, but it didn't seem to allow one to automatically
> save the results to a specified file.
>
> import ij.*;
> import ij.process.*;
> import ij.gui.*;
> import java.awt.*;
> import ij.plugin.*;
>
> public class Macro_ implements PlugIn {
>
>         public void run(String arg) {
>                 IJ.run("Set Measurements...", "area centroid
> decimal=3");
>                 IJ.run("Open...", "path=/home/rachelb/R14002R.tif");
>                 IJ.run("Processbugs ");
>                 IJ.run("Custom Particle Analyzer", "minimum=4
> maximum=20 bins=20 show=Nothing display clear stack");
>                 IJ.run("Measurements...",
> "path=/home/rachelb/R14002R.txt");
>         }
>
> }
>
> (Processbugs is just a little plugin I wrote which does some
> image calculations and thresholding.)
>
> Thanks in advance for any help!
>
> Rachel
>

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