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Message-ID:  <[log in to unmask]>
Date:         Wed, 22 May 2002 11:50:04 -0700
Reply-To:     ImageJ Interest Group <[log in to unmask]>
Sender:       ImageJ Interest Group <[log in to unmask]>
From:         Rachel Bearon <[log in to unmask]>
Subject:      batch processing of stacks and saving results

I would like to process all files in a directory and record the results. I
wrote the following plugin to process one file at a time, but I would like
to be able to automatically loop through all files in the directory. In
the archives I found reference to a method for opening and processing all
files in a directory, but it didn't seem to allow one to automatically
save the results to a specified file.

import ij.*;
import ij.process.*;
import ij.gui.*;
import java.awt.*;
import ij.plugin.*;

public class Macro_ implements PlugIn {

        public void run(String arg) {
                IJ.run("Set Measurements...", "area centroid decimal=3");
                IJ.run("Open...", "path=/home/rachelb/R14002R.tif");
                IJ.run("Processbugs ");
                IJ.run("Custom Particle Analyzer", "minimum=4 maximum=20 bins=20 show=Nothing display clear stack");
                IJ.run("Measurements...", "path=/home/rachelb/R14002R.txt");
        }

}

(Processbugs is just a little plugin I wrote which does some image
calculations and thresholding.)

Thanks in advance for any help!

Rachel

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