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In press
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Click the links to go to documents. Click the green arrow  to see metadata.
In press
Haltuch, M. A., A. E. Punt, M. W. Dorn. In press. Evaluating Alternative Estimators of Fishery Management Reference Points. Fisheries Research.
Waples, R. S., A. E. Punt, J. M. Cope. In press. Integrating genetic data into management of marine resources: How can we do it better? Fish and Fisheries.
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2008
Hamel, O. S., K. R. Piner, J. R. Wallace. 2008. A robust deterministic model describing the bomb radiocarbon signal for use in fish age validation. Transactions of the American Fisheries Society, 137(3):852-859.
Keller, A. A., B. H. Horness, E. L. Fruh, V. H. Simon, V. J. Tuttle, K. L. Bosley, J. C. Buchanan, D. J. Kamikawa, J. R. Wallace. 2008. The 2005 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-93, 136 p.
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2007
Helser, T. E., I. J. Stewart, H. Lai. 2007. A Bayesian Hierarchical Meta-analysis of growth for the genus Sebastes in the Eastern Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences.
Helser, T. E., I. J. Stewart, C. Whitmire, B. H. Horness. 2007. Model-based estimates of abundance for 11 species from the NMFS slope surveys. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-82, 145 p.
Keller, A. A., V. H. Simon, B. H. Horness, J. R. Wallace, V. J. Tuttle, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2003 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-86, 130 p.
Keller, A. A., B. H. Horness, V. H. Simon, V. J. Tuttle, J. R. Wallace, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2004 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-87, 134 p.
Stewart, I. J. 2007. Defining plausible migration rates based on historical tagging data: a Bayesian mark-recapture model applied to English sole. Fishery Bulletin, 105:470-484.
Stewart, I. J., K. R. Piner. 2007. Simulation of the estimation of ageing bias inside an integrated assessment of canary rockfish using age estimates from a bomb radiocarbon study. Marine & Freshwater Research, 58(10):905-913.
Whitmire, C.E., Embley, R.W., Wakefield, W.W., Merle, S.G., and Tissot, B.N., 2007, A quantitative approach for using multibeam sonar data to map benthic habitats, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 111-126
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2006
Helser, T. E., I. J. Stewart, G. W. Fleischer, S. Martell. 2006.  Stock Assessment of Pacific Hake. In Status of the Pacific Coast Groundfish Fishery through 2005, Stock Assessment and Fishery Evaluation: Stock Assessments and Rebuilding Analyses.
Keller, A. A., E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness, V. H. Simon, V. J. Tuttle. 2006. The 2001 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-72, 175 p.
Keller, A. A., B. H. Horness, V. J. Tuttle, J. R. Wallace, V. H. Simon, E. L. Fruh, K. L. Bosley, D. J. Kamikawa. 2006. The 2002 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-75, 189 p.
Piner, K., J. R. Wallace, O. S. Hamel, R. Mikus. 2006. Evaluation of ageing accuracy of bocaccio (Sebastes paucispinis) rockfish using bomb radiocarbon. Fisheries Research, 77(2):200-206.
Quinn, T. P., I. J. Stewart, C. P. Boatright. 2006. Experimental evidence of homing to site of incubation by mature sockeye salmon (Oncorhynchus nerka). Animal Behavior, 72:941-949.
Schirripa, M. J., J. J. Colbert. 2006. Interannual Changes in sablefish (Anoplopoma fimbria) recruitment in relation to oceanographic conditions within the California Current System. Fisheries Oceanography, 15:25-36.
Stewart, I. J. 2006. Stock assessment with an evaluation of structural uncertainty, and model performance applied to English sole. School of Aquatic and Fisheries Sciences. Ph. D. Dissertation University of Washington, 284 p.
Wallace, J.W., West, C.W., 2006. Measurements of distance fished during the trawl retrieval period. Fish. Res. 77, 285292.
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2005
Ariese, F., J. M. Beyer, G. Jonsson, C. Porte-Visa, M. M. Krahn. 2005. Review of analytical methods for determining metabolites of polycyclic aromatic compounds (PACs) in fish bile. ICES Techniques in Marine Environmental Sciences. 39 International Council for the Exploration of the Sea, Copenhagen, Denmark, ii, 41 p.
Hamel, O. S. 2005. Immunosuppression in progeny of chinook salmon infected with Renibacterium salmoninarum: re-analysis of a brood stock segregation experiment. Diseases of Aquatic Organisms, 65(1):29-41.
Hamel, O. S. 2005. Rebuilding update for the Pacific Ocean Perch. Report to Pacific Fisheries Management Council Portland, OR..
Hamel, O. S. 2005. Status and Future Prospects for the Pacific Ocean Perch Resource in Waters off Washington and Oregon as Assessed in 2005. Report to Pacific Fisheries Management Council Portland, OR..
Hamel, O. S. 2005. Status and Future Prospects for the Shortspine Thornyhead Resource in Waters off Washington,Oregon, and California as Assessed in 2005. Report to Pacific Fisheries Management Council Portland, OR..
Kahn, D. M., T. E. Helser. 2005. Abundance, dynamics and mortality rates of the Delaware Bay stock of blue crabs, Callinectes sapidus. Journal of Shellfish Research, 24:269-284.
Keller, A. A., T. L. Wick, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness. 2005. The 2000 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-70, 163 p.
Methot, R. D., I. J. Stewart. 2005. Status of the U.S. canary rockfish resource in 2005. In Status of the Pacific Coast Groundfish Fishery through 2005, Stock Assessment and Fishery Evaluation.
Piner, K., O. S. Hamel, J. L. Menkel, J. R. Wallace, C. E. Hutchinson. 2005. Age validation of canary rockfish (Sebastes pinniger) from off the Oregon coast (USA) using the bomb radiocarbon method. Canadian Journal of Fisheries and Aquatic Sciences, 62(5):1060-1066.
Piner, K., M. A. Haltuch, J. R. Wallace. 2005. Preliminary use of oxygen stable isotopes and the 1983 El Nino to assess the accuracy of aging black rockfish (Sebastes melanops). Fishery Bulletin, 103:553-558.
Stewart, I. J. 2005. Status of the U.S. English sole resource in 2005. In Status of the Pacific Coast Groundfish Fishery through 2005, Stock Assessment and Fishery Evaluation.
Wakefield, W. W., C. Whitmire, J. E. Clemons, B. N. Tissot. 2005. Fish habitat studies: Combining high-resolution geological and biological data. Pages 119-138 in Barnes, P. W., J. P. Thomas. (Eds.) Benthic habitats and the effects of fishing. American Fisheries Society, Symposium 41,, Bethesda, Maryland.
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2004
Gertsev, V. I., V. V. Gertseva. 2004. Classification of mathematical models in ecology. Ecological Modelling, 178:329-334.
Gertseva, V. V., J. E. Schindler, V. I. Gertsev, N. Y. Ponomarev, W. R. English. 2004. A simulation model of the dynamics of aquatic macroinvertebrate communities. Ecological Modelling, 176:173-186.
Helser, T. E., H. Lai. 2004. A Bayesian hierarchical meta-analysis of fish growth: with an example for North American largemouth bass, Micropterus salmoides. Ecological Modelling, 178:399-416.
Helser, T. E., H. Lai, I. J. Stewart. 2004. A Bayesian hierarchical meta-analysis of growth for the genus Sebastes in the eastern Pacific Ocean. In Symposium on Dynamics and Exploitation on Marine Living Resources. ICES C.M. 2004/K:21.
Helser, T. E., H. Lai. 2004. A bayesian hierarchical meta-analysis of fish growth: with an example for North American largemouth bass. Ecological Modelling, (178)399-416.
Helser, T. E., A. E. Punt, R. D. Methot. 2004. A generalized linear mixed model analysis of a multi-vessel fishery resource survey. Fisheries Research, 70:251-264.
Helser, T. E., R. D. Methot, G. W. Fleischer. 2004. Stock Assessment of Pacific Hake (Whiting) in U.S. and Canadian Waters in 2003. In Pacific Fishery Management Council, Appendix: Status of the Pacific Coast Groundfish Fishery Through 2004 and Stock Assessment and Fishery Evaluation. Pacific Fishery Management Council, 2130 SW Fifth Avenue, Suite 224, Portland, OR 97201.
Lai, H., T. E. Helser. 2004. Linear mixed-effects models for weight-length relationships. Fisheries Research, 70:377-387.
Lai, H., T. E. Helser. 2004. Linear mixed-effects models for weight-length relationships. Fisheries Research, (70)377-388.
Reiser, D. W., E. S. Greenberg, T. E. Helser. 2004. In situ reproduction, abundance, and growth of young-of-year and adult largemouth bass in a population exposed to polychlorinated biphenyls. Journal of Environmental Toxicology and Chemistry, 23(7):1762-1773.
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2003
Gertseva, V. V., V. I. Gertsev, N. Y. Ponomarev. 2003. Tropho-ethological polymorphism of fish as a strategy of habitat development: a simulation model. Ecological Modelling, 167:159-164.
Hamel, O. S., I. J. Stewart, A. E. Punt. 2003. Status and future prospects for the Pacific ocean perch resource in waters off Washington and Oregon as assessed in 2003. In Status of the Pacific coast groundfish fishery through 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, OR.
Lai, H., T. E. Helser. 2003. Linear mixed-effects models for weight-length relationships. Fisheries Research, 70:367-376.
Punt, A. E., O. S. Hamel, I. J. Stewart. 2003. Rebuilding analysis for Pacific ocean perch for 2003. In Status of the Pacific coast groundfish fishery through 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, OR.
Rogers, J. B. 2003. Species Allocation of Sebastes and Sebastolobus sp. caught by foreign countries from 1965 through 1976 off Washington, Oregon, and California, USA. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-57, 117 p.
Salinger, D. H., J. J. Anderson, O. S. Hamel. 2003. A parameter estimation routine for the vitality-based survival model. Ecological Modelling, 166:287-294.
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2002
Hamel, O. S. 2002. Saving salmon: Why care? Science World, 58(13).
Helser, T. E., M. W. Dorn. 2002. Stock assessment of Pacific whiting in U.S. and Canadian waters in 2001. In Pacific Fishery Management Council, Status of the Pacific Coast groundfish fishery through 2001 and recommended acceptable biological catches in 2003. Pacific Fishery Management Council, 2130 SW Fifth Avenue, Suite 224, Portland, OR 97201.
Ramsey, T. B., T. A. Turk, E. L. Fruh, J. R. Wallace, B. H. Horness, A. J. Cook, K. L. Bosley, D. J. Kamikawa, L. C. Hufnagle Jr., K. Piner. 2002. The 1999 Northwest Fisheries Science Center Pacific West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-55, 143 p.
Schirripa, M. J. 2002. An evaluation of back-calculation methodology using simulated otolith data. Fishery Bulletin, 100:789-799.
Schirripa, M. J. 2002. Status of the sablefish resource off the U. S. Pacific coast in 2002. In Pacific Fishery Management Council 2002. Appendix: Status of the Pacific coast groundfish fishery through 2002 and recommended acceptable biological catches for 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, Oregon.
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2001
Aas, E., J. Beyer, G. Jonsson, W. L. Reichert, O. K. Andersen. 2001. Evidence of uptake, biotransformation and DNA binding of polyaromatic hydrocarbons in Atlantic cod and sea partridge caught in the vicinity of an aluminum works. Marine Environmental Research, 52:213-229.
Jacobson, L. D., J. K. Brodziak, J. B. Rogers. 2001. Depth distributions and time-varying bottom trawl selectivities for Dover sole (Microstomus pacificus), sablefish (Anoplopoma fimbria), and thoryheads (Sebastolobus alascanus and S. altivelis) in a commercial fishery. Fishery Bulletin, 99(2):309-32.
Schirripa, M. J., R. D. Methot. 2001. Status of the sablefish resource off the U. S. Pacific coast in 2001. In Pacific Fishery Management Council 2001. Appendix: Status of the Pacific coast groundfish fishery through 2001 and recommended acceptable biological catches for 2002: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, Oregon.
Turk, T. A., T. L. Builder, C. W. West, D. J. Kamikawa, J. R. Wallace, R. D. Methot, A. R. Bailey, K. L. Bosley, A. J. Cook, E. L. Fruh, B. H. Horness, K. Piner, H. R. Sanborn, W. W. Wakefield. 2001. The 1998 Northwest Fisheries Science Center Pacific West Coast Upper Continental Slope Trawl Survey of Groundfish Resources off Washington, Oregon, and California: Estimates of Distribution, Abundance, and Length Composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-50, 122 p.
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2000
Methot, R. D., J. R. Wallace, C. W. West. 2000. Introducing a new trawl survey for West Coast slope groundfish. In Western Groundfish Conference, Sitka, Alaska. ICES C. M. 2000/W:11 15 pp.
Rogers, J. B., R. D. Methot, T. L. Builder, K. Piner, M. Wilkins. 2000. Status of the Darkblotched Rockfish (Sebastes crameri) Resource in 2000. In Status of the Pacific Coast Groundfish Fishery Through 1999 and Recommended Biological Catches for 2001: Stock Assessment and Fishery Evaluation. Pacific Fishery Management Council 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.
Rogers, J. B., R. D. Methot, T. L. Builder, M. Wilkins. 2000. Status of the Pacific Coast groundfish fishery through 1999 and recommended biological catches for 2001: Stock assessment and fishery evaluation. In Pacific Fishery Management Council 2130 SW Fifth Avenue, Suite 224, Portland, OR 97201.
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1999
Rogers, J. B., T. L. Builder. 1999. Pacific Coast Groundfish Fisheries. Pages Unit 15, p. 175-181 in Our Living Oceans: Report on the status of U. S. living marine resources. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-F/SPO-41, 301 p.
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1998
Rogers, J. B., T. L. Builder, P. R. Crone, J. K. Brodziak, R. D. Methot, R. J. Conser. 1998. Status of the shortspine thornyhead (Sebastolobus alascanus) resource in 1998. In Pacific Fishery Management Council. Appendix: Status of the Pacific coast groundfish fishery through 1998 and Recommended Acceptable Biological Catches for 1999. PFMC, 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.
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1997
Rogers, J. B., L. D. Jacobson, R. R. Lauth, J. N. Ianelli, M. Wilkins. 1997. Status of the thornyhead (Sebastolobus sp. ) resource in 1997. In Pacific Fishery Management Council. Appendix: Status of the Pacific coast groundfish fishery through 1997 and Recommended Acceptable Biological Catches for 1998. PFMC, 2130 SW Fifth Avenue, Suite 224, Portland, Oregon 97201.
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1996
Rogers, J. B., M. Wilkins, D. J. Kamikawa, F. Wallace, T. L. Builder, M. Zimmerman, M. Kander, B. Culver. 1996. Status of the remaining rockfish in the Sebastes complex in 1996 and recommendations for management in 1997. In Appendix E In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1996 and Recommended Acceptable Biological Catches for 1997. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
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1995
Rogers, J. B. 1995. Sebastes complex assessment methodology. In Appendix D In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1995 and Recommended Acceptable Biological Catches for 1996. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
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1994
Rogers, J. B. 1994. Assemblages of groundfish caught using commercial fishing strategies off the coasts of Oregon and. Ph.D. Oregon State University, Corvallis, OR, 133 p.
Rogers, J. B. 1994. Preliminary status of the splitnose rockfish stock in 1994. In Appendix H In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1994 and Recommended Acceptable Biological Catches for 1995. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
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1993
Rogers, J. B., J. R. Bence. 1993. Status of the chilipepper rockfish stock in 1993. In Appendix D In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1993 and Recommended Acceptable Biological Catches for 1994. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
Rogers, J. B., W. H. Lenarz. 1993. Status of the widow rockfish stock in 1993. In Appendix B In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1993 and Recommended Acceptable Biological Catches for 1994. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
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1992
Bence, J. R., J. B. Rogers. 1992. Status of the bocaccio in the Conception/Monterey/Eureka areas with recommendations for management in 1993. In Appendix B In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1992 and Recommended Acceptable Biological Catches for 1993. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
Rogers, J. B., E. K. Pikitch. 1992. Numerical definition of groundfish assemblages caught off the coasts of Oregon and Washington using commercial fishing strategies. Canadian Journal of Fisheries and Aquatic Sciences, 49(12):2648-2656.
Rogers, J. B., J. R. Bence. 1992. Review of fishery and auxillary data for chilipepper rockfish in the Eureka/Conception/Monterey INPFC areas: a qualitative assessment of the status of the stock in 1992. In Appendix F In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1992 and Recommended Acceptable Biological Catches for 1993. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.
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1991
Rogers, J. B., C. C. Burley. 1991. A sigmoid model to predict gastric evacuation rates of smallmouth bass (Micropterus dolomieui) fed juvenile salmon. Canadian Journal of Fisheries and Aquatic Sciences, 46(5):933-937.
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1989
Rogers, J. B. 1989. Life history characteristics of commercially important groundfish species off. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-166, 39 p.
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1988
Beyer, J., G. Lucchetti, G. Gray. 1988. Digestive tract evacuation in northern squawfish (Ptychocheilus oregonensis). Canadian Journal of Fisheries and Aquatic Sciences, 45(1):548-553.
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