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Molecular Mechanism of Gating in Cyclic Nucleotide-gated Ion Channels
CIT ID: 6176 Cyclic nucleotide-regulated channels, such as CNG channels and HCN channels, underlie the primary electrical signals in phototransduction and olfactory
transduction and control the repetitive firing activity of cardiac and neuronal cells. Activation of these channels involves the direct binding of
cyclic nucleotide to an intracellular domain of the channel. Dr. Zagotta's lab has been interested in understanding the molecular mechanism for this allostery. To
do this, they have employed a number of fluorescence approaches combined with patch-clamp fluorometry, a technique for simultaneously recording electrical
current and fluorescence from excised inside-out patches. They explored the structure and conformational rearrangements of the C-terminal gating ring of
the cyclic nucleotide-gated channel CNGA1 during activation by cyclic nucleotides. By monitoring fluorescent resonance energy transfer (FRET)
between membrane-resident quenchers and fluorophores attached to the channel, Dr. Zagotta's lab detected no movement orthogonal to the membrane during channel
activation. By monitoring FRET between fluorophores within the C-terminal region, they determined that the C-terminal end of the C-linker and the end of
the C-helix move apart when channels open. They conclude that during channel activation, a portion of the gating ring moves parallel to the plasma
membrane, hinging toward the central axis of the channel.
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Regulation of p53 in Mammalian Cells
CIT ID: 6207 The focus of much of the work in Dr. Prives' laboratory is the functions of p53 and its negative regulator and transcriptional target, Mdm2. Two general areas are being investigated, how p53 functions as a transcription factor and the roles and regulation of Mdm2.
P53 is a sequence-specific transcriptional activator of genes involved in cellular outcomes such as cell cycle arrest and apoptosis. We have identified a new co-regulator of select p53 targets, Cas/Cse1L, a protein previously shown to be involved in nuclear transport. Cas/Cse1L binds to the promoters of a subset of p53 targets and levels of Cas/Cse1L are correlated with the extent to which these genes are induced by p53. Atne p53 target promoter, PIG3, Cas/Cse1L has a long range inhibitory effect on tri-methylation of histone H3 lysine 27, a repressive modification, which could explain how Cas/Cse1L and p53 cooperate to regulate some p53 targets and apoptosis.
Another project stems from our earlier finding that in some cells p53 is impaired in its ability to induce transcription from some of its target genes when cells are blocked in S phase. We have extended these findings by showing that while p53 can bind to its sites within these promoters and recruit histone acetylases, TFIID and RNA polymerase, transcription elongation by RNA polymerase is significantly reduced when the DNA replication checkpoint is activated. Our data implicate the checkpoint kinases in this block to elongation of p53 targets.
Regarding our studies on Mdm2, an extensive yeast two-hybrid screen led to the identification of RPS7, a ribosomal protein that can interact with and regulate Mdm2. Ribosomal stress leads to the appearance of RPS7 in the nucleoplasm and
RPS7 inhibits Mdm2 E3 ligase activity in vivo and in vitro. Our data also suggest that the Mdm2 homologue, MdmX, is involved in RPS7 repression of Mdm2.
Further, ablation of RPS7 causes both increased turnover of Mdm2 and decreased
p53 after treatment of cells with several genotoxic agents. Our data thus implicate ribosomal and nucleolar stress as being very important for DNA damage signaling to p53. Interestingly as well, RPS7 itself is a substrate of the Mdm2
E3 ligase activity suggesting a new circuit whereby a negative regulator of
Mdm2 is itself an Mdm2 target.
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If We Want More Evidence-Based Practice, We Need More Practice-Based Evidence
CIT ID: 6206 This examination of the evidence-based medicine movement first reviews some recent events that have accelerated the search for ways to improve the quality of practice, which tends to be defined as the degree to which practice is following evidence-based guidelines. It proposes five ways to make research more relevant to practice: The first is the conventional and most widely and aggressively pursued path of pushing evidence through a pipeline to practitioners by means of continuing education, systematic reviews of the research literature converted into evidence-based practice guidelines, and the simplification of those guidelines with chart reminders, video and computer-based information systems, and similar devices to make the dissemination and application of the evidence more efficient and manageable in practice settings. Some major limitations and consequences of this pipeline
strategy will be reviewed.
The second approach is to shift the priorities of research-funding agencies and processes of peer review. Such priorities would reorient the production of research to make it more relevant to practice. This strategy will be illustrated with the experience of the U.S. Centers for Disease Control (CDC) and the Canadian Institute for Health Research. This strategy will depend also on a reorientation of the journal editing, peer review and publishing priorities to give greater emphasis to external validity.
The third approach is to put greater emphasis on participatory research that engages practitioners more actively at least in formulating the research questions and interpreting the results, if not also in collecting and analyzing the data. Some defining features of participatory research will be reviewed.
The fourth approach is translating research from distant and often artificial circumstances under which the evidence was produced to the local culture and real-world circumstances in which the application of the evidence would be required. This would call on greater use of theory to fill gaps in the evidence.
Finally, a combination of these first four into a strategy of producing a more practice-based research agenda would have the dual benefits of making the research more relevant to practice and making the practitioners more receptive to the evidence because it would be produced under circumstances more like their own.
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Multiple Pathways to Synaptic Vesicle Endo and Exocytosis
CIT ID: 6175 Synaptic vesicles appear very homogeneous, and within a particular nerve terminal, they are generally presumed to contain the same set of integral membrane proteins. However, considerable work has demonstrated that synaptic vesicles differ dramatically in their functional properties. Only a fraction of all the vesicles, the recycling pool accounts for essentially all the evoked release. In contrast, the reserve pool is much more difficult to mobilize. Although the difference between these pools is often considered to reflect differences in their history, or association with cytoskeletal proteins, work on the recycling of a specific synaptic vesicle protein now suggests that the pools may differ in their molecular components. In particular, we find that vesicular glutamate transporter 1 (VGLUT1) recycles by two distinct endocytic pathways, which may in turn target to the different synaptic vesicle pools. The mechanism of endocytosis may therefore dictate the properties of exocytosis. We will also present data about the physiological role of VGLUT3, an atypical isoform expressed largely by neurons considered to use a transmitter other than glutamate.
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