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VISTA is a comprehensive suite of programs and
databases for comparative analysis of genomic sequences. There are
two ways of using VISTA - you can submit your own sequences and
alignments for analysis (VISTA servers) or examine pre-computed
whole-genome alignments of different species.
mVISTA
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Align and compare your sequences from multiple species
Submit
Instructions
Download
About
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rVISTA
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Regulatory VISTA combines transcription factor
binding sites database search with a comparative sequence analysis.
It can be used directly or through mVISTA, Genome VISTA, or
VISTA Browser
Submit
Instructions
About
Cite
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GenomeVISTA
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Compare your sequences with whole genome
assemblies. It will automatically find the ortholog, obtain
the alignment and VISTA plot. View your alignment together with
pre-computed alignments of other species in the same interval.
Submit
About
Cite
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Phylo-VISTA
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Analyze multiple DNA sequence alignments
of sequences from different species while considering their
phylogenic relationships.
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wgVISTA
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Align sequences up to 10Mb long (finished or
draft) including microbial whole-genome assemblies.
Submit
Instructions
About
Cite
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VISTA Browser
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Allows the user to examine pre-computed alignments
of whole genome assemblies. Pairwise and multiple alignments are
available.
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Whole Genome rVISTA
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Whole Genome rVISTA evaluates which
conserved between pairs of species transcription factor
binding sites (TFBS) are over-represented in upstream
regions in a group of genes.
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Microbial genomes
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Pre-computed full scaffold alignments for
microbial genomes are
available as the VISTA component of
IMG
(Integrated Microbial Genomes) developed in DOE Joint Genome
Institute.
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PGA
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Berkeley PGA uses a comparative genomic approach first to identify, and then to determine the function of elements regulating the expression of genes affecting the cardiovascular system.
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SNP-VISTA
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Visualization of mutations in genes and discovery of recombination points in microbial populations.
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TreeQ-Vista
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Interactive tree visualization tool with functional annotation query capabilities.
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VISTA tutorial and training materials from OpenHelix
June 2008
Added whole-genome multiple alignment of seven vertebrates:
Human -- Rhesus -- Horse -- Dog -- Mouse -- Rat -- Chicken
April 2008
Added whole-genome multiple alignments of:
January 2008
43 Alignments of 28 genomes sequenced by JGI are added to
VISTA Browser. Among these species
are fungi, algae, plants, and others.
December 2007
Added whole-genome multiple alignment of four primates
Human -- Orangutan -- Rhesus -- Marmoset
October 2007
The mVISTA and
GenomeVISTA servers can now
automatically retrieve gene annotations for GenBank sequences.
Added whole genome alignment of:
September 2007
Added whole genome alignments of:
The wgVISTA server can now automatically retrieve gene
annotations for GenBank sequences.
News Archive...
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