Community Sequencing Program
Sequencing Plans for 2009
For status information, see the Genome Projects section.
| Organism | Proposer | Affiliation |
|---|---|---|
| Eukaryotes | ||
| Resequencing Trichoderma reesei Why? |
Scott Baker | Pacific Northwest National Lab |
| Rhizopogon salebrosus (ectomycorrhizal fungus) | Thomas Bruns | University of California, Berkeley |
| Ceriporiopsis subvermispora (lignin-degrading fungus) Why? |
Daniel Cullen | USDA Forest Products Laboratory |
| Gene expression in Chlamydomonas reinhardtii Why? |
Maria Ghirardi | Natl. Renewable Energy Lab. |
| Paralvinella sulfincola (polychaete worm) Why? |
Peter Girguis | Harvard Univ. |
| Thalassiosira rotula (diatom) Why? |
Bethany Jenkins | Univ. of Rhode Island |
| Dendroctonus frontalis (southern pine beetle) ESTs | Scott Kelley | San Diego State Univ. |
| Botryococcus braunii (Oil-Producing Green Microalga) cDNA Why? |
Andrew Koppisch | Los Alamos Natl. Lab. |
| Chlamydomonas and Volvox transcriptomes | Sabeeha Merchant | Univ. of California, Los Angeles |
| Spirodela polyrhiza (duckweed) Why? |
Todd Michael | Rutgers |
| Zostera marina (seagrass) | Jeanine Olsen | University of Groningen |
| Gossypium (cotton) Why? |
Andrew Paterson | Univ. of Georgia |
| Pine BAC Sequencing Why? |
Daniel Peterson | Mississippi State Univ. |
| Hansenula polymorpha strain NCYC 495 leu1.1 (ATCC MYA-335) Why? |
Andriy Sibirny | Institute of Cell Biology, Ukraine |
| Resequencing of Brachypodium distachyon | John Vogel | USDA-ARS Western Regional Research Center |
| Nanoflagellates: Paraphysomonas, Ochromonas, and Spumella Why? |
Alexandra Worden | Monterey Bay Aquarium Research Institute |
| Bacteria and Archaea | ||
| Four diverse cellulose degrading microbes Why? |
Iain Anderson | DOE JGI |
| Escherichia coli MG1655 | John Battista | Lousiana State Univ. |
| Sinorhizobium meliloti strains AK83 and BL225C | Emanuele Biondi | Universita' di Firenze |
| Methylotenera species Why? |
Ludmila Chistoserdova | Univ. of Washington |
| SAR11 Genome Evolution | Stephen Giovannoni | Oregon State Univ. |
| Rhodopseudomonas palustris strain DX-1 Why? |
Caroline Harwood | Univ. of Washington |
| Cycloclasticus pugetii (a PAH-Degrading Bacterium) | Russell Herwig | Univ. of Washington |
| Burkholderia sp. Ch1-1 and Burkholderia sp. Cs1-4 Why? |
William Hickey | Univ. of Wisconsin |
| Sphaerochaeta pleomorpha and Sphaerochaeta globus | Frank Loeffler | Georgia Inst. of Technology |
| Archaeal transcriptomes | Todd Lowe | Univ. of California Santa Cruz |
| Dehalogenimonas lykanthroporepellens | William Moe | Louisiana State Univ. |
| Desulfurococcus (hyperthermophilic archaeon) Why? |
Biswarup Mukhopadhyay | Virginia Bioinformatics Inst., Virginia Polytechnic Inst. and State Univ. |
| Mesorhizobium ciceri bv biserrulae (strains WSM1271, WSM2073 and WSM2075) (legume symbionts) | Kemanthi Nandasena | Murdoch Univ. |
| Thermoacidophiles of deep-sea hydrothermal vents | Anna-Louise Reysenbach | Portland State Univ. |
| Alicycliphilus denitrificans strain BC | Alfons Stams | Wageningen Univ. |
| Desulfotomaculum species | Alfons Stams | Wageningen Univ. |
| Freshwater Actinobacteria belonging to the acI lineage | Falk Warnecke | DOE JGI |
| Metagenomes | ||
| Novel subsurface microbial phylotypes | Jennifer Biddle | Univ. of North Carolina, Chapel Hill |
| Highly efficient, highly stable, reductive dechlorinating bioreactor | Eoin Brodie | Lawrence Berkeley National Lab |
| Bankia setacea (shipworm) metagenome. Why? |
Daniel Distel | Ocean Genome Legacy |
| Hoatzin crop microbiome | Maria Dominguez-Bello | Univ. of Puerto Rico |
| Ammonia-oxidizing archaeal enrichment culture | Christopher Francis | Stanford Univ. |
| Subarctic Pacific Ocean | Steven Hallam | Univ. of British Columbia |
| Lake Vostok accretion ice | Philip Hugenholtz | DOE JGI |
| Microbial communities at the Hanford 300A IFC Site. Why? |
Allan Konopka | Pacific Northwest Natl. Lab. |
| PCE-dechlorinating mixed communities | Ruth Richardson | Cornell Univ. |
| Uncultivated marine viruses Why? |
Grieg Steward | Univ. of Hawaii |
| Great Salt Lake | Bart Weimer | Utah State Univ. |
