All Sequencing Projects
Community Sequencing Program FY2009
| Organism | Proposer | Affiliation |
|---|---|---|
| Eukaryotes | ||
| Resequencing Trichoderma reesei Why? |
Scott Baker | Pacific Northwest National Lab |
| Rhizopogon salebrosus (ectomycorrhizal fungus) | Thomas Bruns | University of California, Berkeley |
| Ceriporiopsis subvermispora (lignin-degrading fungus) Why? |
Daniel Cullen | USDA Forest Products Laboratory |
| Gene expression in Chlamydomonas reinhardtii Why? |
Maria Ghirardi | Natl. Renewable Energy Lab. |
| Paralvinella sulfincola (polychaete worm) Why? |
Peter Girguis | Harvard Univ. |
| Thalassiosira rotula (diatom) Why? |
Bethany Jenkins | Univ. of Rhode Island |
| Dendroctonus frontalis (southern pine beetle) ESTs | Scott Kelley | San Diego State Univ. |
| Botryococcus braunii (Oil-Producing Green Microalga) cDNA Why? |
Andrew Koppisch | Los Alamos Natl. Lab. |
| Chlamydomonas and Volvox transcriptomes | Sabeeha Merchant | Univ. of California, Los Angeles |
| Spirodela polyrhiza (duckweed) Why? |
Todd Michael | Rutgers |
| Zostera marina (seagrass) | Jeanine Olsen | University of Groningen |
| Gossypium (cotton) Why? |
Andrew Paterson | Univ. of Georgia |
| Pine BAC Sequencing Why? |
Daniel Peterson | Mississippi State Univ. |
| Hansenula polymorpha strain NCYC 495 leu1.1 (ATCC MYA-335) Why? |
Andriy Sibirny | Institute of Cell Biology, Ukraine |
| Resequencing of Brachypodium distachyon | John Vogel | USDA-ARS Western Regional Research Center |
| Nanoflagellates: Paraphysomonas, Ochromonas, and Spumella Why? |
Alexandra Worden | Monterey Bay Aquarium Research Institute |
| Bacteria and Archaea | ||
| Four diverse cellulose degrading microbes Why? |
Iain Anderson | DOE JGI |
| Escherichia coli MG1655 | John Battista | Lousiana State Univ. |
| Sinorhizobium meliloti strains AK83 and BL225C | Emanuele Biondi | Universita' di Firenze |
| Methylotenera species Why? |
Ludmila Chistoserdova | Univ. of Washington |
| SAR11 Genome Evolution | Stephen Giovannoni | Oregon State Univ. |
| Rhodopseudomonas palustris strain DX-1 Why? |
Caroline Harwood | Univ. of Washington |
| Cycloclasticus pugetii (a PAH-Degrading Bacterium) | Russell Herwig | Univ. of Washington |
| Burkholderia sp. Ch1-1 and Burkholderia sp. Cs1-4 Why? |
William Hickey | Univ. of Wisconsin |
| Sphaerochaeta pleomorpha and Sphaerochaeta globus | Frank Loeffler | Georgia Inst. of Technology |
| Archaeal transcriptomes | Todd Lowe | Univ. of California Santa Cruz |
| Dehalogenimonas lykanthroporepellens | William Moe | Louisiana State Univ. |
| Desulfurococcus (hyperthermophilic archaeon) Why? |
Biswarup Mukhopadhyay | Virginia Bioinformatics Inst., Virginia Polytechnic Inst. and State Univ. |
| Mesorhizobium ciceri bv biserrulae (strains WSM1271, WSM2073 and WSM2075) (legume symbionts) | Kemanthi Nandasena | Murdoch Univ. |
| Thermoacidophiles of deep-sea hydrothermal vents | Anna-Louise Reysenbach | Portland State Univ. |
| Alicycliphilus denitrificans strain BC | Alfons Stams | Wageningen Univ. |
| Desulfotomaculum species | Alfons Stams | Wageningen Univ. |
| Freshwater Actinobacteria belonging to the acI lineage | Falk Warnecke | DOE JGI |
| Metagenomes | ||
| Novel subsurface microbial phylotypes | Jennifer Biddle | Univ. of North Carolina, Chapel Hill |
| Highly efficient, highly stable, reductive dechlorinating bioreactor | Eoin Brodie | Lawrence Berkeley National Lab |
| Bankia setacea (shipworm) metagenome. Why? |
Daniel Distel | Ocean Genome Legacy |
| Hoatzin crop microbiome | Maria Dominguez-Bello | Univ. of Puerto Rico |
| Ammonia-oxidizing archaeal enrichment culture | Christopher Francis | Stanford Univ. |
| Subarctic Pacific Ocean | Steven Hallam | Univ. of British Columbia |
| Lake Vostok accretion ice | Philip Hugenholtz | DOE JGI |
| Microbial communities at the Hanford 300A IFC Site. Why? |
Allan Konopka | Pacific Northwest Natl. Lab. |
| PCE-dechlorinating mixed communities | Ruth Richardson | Cornell Univ. |
| Uncultivated marine viruses Why? |
Grieg Steward | Univ. of Hawaii |
| Great Salt Lake | Bart Weimer | Utah State Univ. |
Community Sequencing Program FY2008
| Organism | Proposer | Affiliation |
|---|---|---|
| Large Eukaryotes | ||
| Eucalyptus tree Why? |
Myburg | Univ. of Pretoria |
| Foxtail millet (Setaria italica) Why? |
Bennetzen | Univ. of Georgia |
| Porphyra purpurea (a marine red alga) Why? |
Brawley | Univ. of Maine |
| Small Eukaryotes | ||
| Agaricus bisporus (a leaf-litter degrading homobasidiomycete ) Why? |
Challen | Univ. of Warwick |
| Heterodera glycines (Soybean Cyst Nematode) Why? |
Lambert | Univ. of illinois at Urbana-Champaign |
| Marchantia polymorpha Why? |
Bowman | Monash Univ. and Univ. of California Davis |
| Paxillus involutus (an ectomycorrhizal fungus) Why? |
Tunlid | Lund Univ. |
| Phaeocystis antarctica: A dominant phytoplankter and ice alga in the Southern Ocean Why? |
Berg | Stanford Univ. |
| Phaeocystis globosa Why? |
Allen | The Inst. for Genomic Research |
| ESTs for Pines and Other Conifers Why? |
Dean | Univ. of Georgia |
| Tetrahymena thermophila strain SB210 Why? |
Collins | Univ. of California Berkeley |
| Metagenomes | ||
| Type I Accumulibacter Why? |
McMahon | Univ. of Wisconsin-Madison |
| Anammox bacteria (Scalindua marina, Brocadia fulgida, and Anammoxglobus propionicus) Why? |
Jetten | Radboud Univ. |
| A biogas-producing microbial community Why? |
Wu | Univ. of California Davis |
| Extreme microbial habitats across the Yellowstone geothermal ecosystem Why? |
Inskeep | Montana State Univ. |
| Isolates | ||
| Allochromatium vinosum DSM 180(T) Why? |
Dahl | Univ. of Bonn |
| Uncultivated methane-oxidizing archaeon ANME-1 Why? |
Hallam | Univ. of British Columbia |
| Budding and non-budding stalked bacteria from aquatic environments (Asticcacaulis biprosthecum, Asticcacaulis excentricus, Brevundimonas subvibrioides, Herschia baltica, Hyphomicrobium denitrificans, and Rhodomicrobium vannielii) Why? |
Brun | Indiana Univ. |
| Diaphorobacter sp. strain TPSY, Ferrutens nitratireducens strain 2002, and Azospira suillum strain PS Why? |
Coates | Univ. of California Berkeley |
| Frankia strains (EuI1c, BCU110501, R43, BMG5.12, and AmMr) Why? |
Tisa | Univ. of New Hampshire |
| Haloalkaliphilic sulfate-, thiosulfate- and sulfur-reducing bacteria (Desulfonatronovirga dismutans ASO3-1, Desulfovibrio alkaliphilus AHT2, and Dethiobacter alkaliphilus AHT1) Why? |
Muyzer | Delft Univ. of Technology |
| Halothiobacillus neapolitanus and Thiomonas intermedia Why? |
Heinhorst | Univ. of Southern Mississippi |
| Thermophilic or hyperthermophilic methanoarchaea within the Methanococcales (Methanothermococcus okinawensis IH1, Methanotorris igneus Kol 5, Methanotorris formicicus Mc-S-70, Methanocaldococcus fervens AG86, Methanocaldococcus infernus ME, Methanocaldococcus vulcanius M7, and Methanocaldococcus strain FS406-22) Why? |
Whitman | Univ. of Georgia |
| Type I and Type II methanotrophic bacteria (Methylomicrobium album BG8 and Methylosinus trichosporium OB3b) Why? |
Stein | Univ. of California Riverside |
| Two Micromonosporas (aurantiaca and L5) Why? |
Hirsch | Univ. of California Los Angeles |
| Natrialba magadii ATCC 43099 Why? |
Maupin-Furlow | Univ. of Florida |
| Pseudonocardia dioxanivorans CB1190 Why? |
Mahendra | Univ. of California Berkeley |
| Selenospirillum indicus Why? |
Bini | Rutgers Univ. |
| Starkeya novella Why? |
Kappler | Univ. of Queensland |
| Thermovibrio ammonificans DSM 15698 Why? |
Vetriani | Rutgers Univ. |
| Variovorax paradoxus strains (S110 and EPS) Why? |
Han | Rensselaer Polytechnic Inst. |
| Zymomonas mobilis strains: Zymomonas mobilis strains: subsp. mobilis ATCC 10988, ATCC 29191, ATCC 31821 (ZM4), CP4; subsp. pomaceae ATCC 29192; sp. NCIB 11163 Why? |
Pappas | Univ. of Athens |
Community Sequencing Program FY2007
| Organism | Proposer | Affiliation |
|---|---|---|
| Large Eukaryotes | ||
| Aquilegia formosa Why? |
Hodges | UC Santa Barbara |
| Brachypodium distachyon (Poaceae) Why? |
Vogel | USDA-ARS |
| Gossypium (cotton) Why? |
Paterson | Univ. of Georgia |
| Manihot esculenta (cassava) Why? |
Fauquet | Danforth Plant Science Ctr. |
| Small Eukaryotes | ||
| Cryphonectria parasitica (chestnut blight fungus) Why? |
Nuss | Univ. of Maryland Biotech. Inst. |
| Reef-building corals and dinoflagellate symbionts (ESTs from Acropora palmata, Montastraea faveolata, and Symbiodinium clade A and clade B) Why? |
Medina | Univ. of California, Merced |
| Fragilariopsis cylindrus (a diatom) Why? |
Mock | Univ. of Washington |
| Guillardia theta and Bigelowiella natans Why? |
Archibald | Dalhousie Univ. |
| Heterobasidion annosum Why? |
Stenlid | Swedish Univ. of Agricultural Sciences |
| Three species of Neurospora (N. discreta, N. tetrasperma FGSC2508, N. tetrasperma FGSC2509) Why? |
Taylor | Univ. of California, Berkeley |
| Peronosporomycete mtDNAs (26) Why? |
Hudspeth | Northern Illinois Univ. |
| Pleurotus ostreatus (oyster mushroom) Why? |
Pisabarro | Public Univ. of Navarre |
| Riftia pachyptila (deep-sea tubeworm) Why? |
Girguis | Harvard Univ. |
| Switchgrass Why? |
Tobias | USDA-ARS |
| Tetranychus urticae (two-spotted spider mite) Why? |
Grbic | Univ. of Western Ontario |
| Thellungiella halophila Why? |
Schumaker | Univ. of Arizona |
| Mating loci from Volvox carteri and Chlamydomonas reinhardtii Why? |
Umen | Salk Inst. |
| Bacteria and Archaea | ||
| Candidatus Amoebophilus asiaticus 5a2 and Encarsia symbiont Cand. Cardinium hertigii Why? |
Horn | Univ. of Vienna |
| Actinobacteria (Arthrobacter chlorophenolicus A6 and Micrococcus luteus) Why? |
Jansson | Swedish Univ. of Agricultural Sciences |
| Beggiatoa alba Why? |
Mueller | Morgan State Univ. |
| Burkholderia (B. ambifaria IOP40-10, B. ambifaria MEX-5, B. graminis C4D1M, B. sp. SEMIA 6167, B. sp. strain H160, B. sp. strain 144F, B. sp. strain CCGE1001, B. sp. strain CCGE1003, B. cepacia ATCC 25416) Why? |
Tiedje | Michigan State Univ. |
| Anaerobic benzene-degrading methanogenic consortium (Chloroflexi, Desulfobacterium sp., Desulfosporosinus sp., Methanomicrobiales-like sp., Methanosaeta sp., Methanosarcinales-like spp) Why? |
Edwards | Univ. of Toronto |
| Crenothrix polyspora enrichment Why? |
Wagner | Univ. of Vienna |
| Cyanothece strains Why? |
Pakrasi | Washington Univ. |
| Dechlorinating community (KB-1) (Dehalococcoides, Geobacter, Methanosarcina, Spirochete, Sporomusa) Why? |
Edwards | Univ. of Toronto |
| Lithifying mat communities of marine stromatolites (Desulfovibrio sp. H0407_12.1Lac, Schizothrix gebeleni sp.A and sp. B, Solentia sp., Sulfate Reducing Bacterium sp. B, and sulfur-oxidizing bacteria) Why? |
Decho | Univ. of South Carolina |
| Candidatus Endomicrobium trichonymphae, Elusimicrobium minutum Pei191 Why? |
Brune | Max Planck Institute for Terrestrial Microbiology |
| Symbiont from the basal clade of the Frankiaceae Why? |
Benson | Univ. of Connecticut |
| Six freshwater iron-oxidizing bacteria (Gallionella ferruginea capsiferriformans ES-2, Leptothrix cholodnii SP-6, Rhodobacter sp. str. SW2, Rhodopseudomonas palustris TIE-1, and Sideroxydans lithotrophicus, Acidovorax delafieldii 2AN) Why? |
Emerson | Amer. Type Culture Collection |
| Microbiome resident in the foregut of the tammar wallaby (Macropus eugenii) Why? |
McSweeney | CSIRO |
| Methanomicrococcus blatticola Why? |
Hackstein | Radboud Univ. Nijmegen |
| Methylocella silvestris BL2, Methylocapsa acidiphila B2, and Beijerinckia indica subsp. indica Why? |
Dunfield | Inst. of Geological and Nuclear Sciences, New Zealand |
| Pedomicrobium manganicum Why? |
Mackenzie, | Univ. of Texas, Houston |
| Microbial community (plasmid mobilome) in wastewater treatment plant Why? |
van der Meer | Univ. of Lausanne |
| Rhizobium leguminosarum bv trifolii (strains WSM1325 and WSM2304) Why? |
Reeve | Murdoch Univ. |
| Near-shore anoxic basin: Saanich Inlet Why? |
Hallam | Univ. of British Columbia |
| Thauera sp. MZ1T Why? |
Sayler | Univ. of Tennessee |
| Thermolithobacter ferrireducens Why? |
Wiegel | Univ. of Georgia |
| Haloalkaliphilic sulfur-oxidizing bacteria (Thioalkalivibrio sp. HL-EbGR7, and T. sp. K90 mix) Why? |
Muyzer | Delft Univ. of Technology |
Community Sequencing Program FY2006
| Organism | Proposer | Affiliation |
|---|---|---|
| Large Eukaryotes | ||
| Arabidopsis lyrata and Capsella
rubella (pink shepherd's-purse) Why? |
Weigel | Max Planck Inst. for Developmental Biology |
| Mimulus guttatus (monkey flower) Why? |
Willis | Duke Univ. |
| Sorghum bicolor Why? |
Paterson | Univ. of Georgia |
| Small Eukaryotes | ||
| Batrachochytrium dendrobatidis (frog-infecting chytrid fungus ) Why? |
Taylor | UC Berkeley |
| Bicyclus anynana (a butterfly) Why? |
Long | UC Irvine |
| Campanulales (Grammathotheca bergiana, Isotoma petraea, Lobelia anceps, L. angolenis, L. baumannii, L. cardinalis, L. erinus, L. galpinii, L. gregoriana, L. inflata, L. jasionoides, L. malowensis, L. laxa, L. linearis chloroplast, L. patula, L. siphilitica, L. spicata, L. thermalis, L. boninensis, L. morogoroensis chloroplast L. holstii chloroplast, Monopsis alba, M. debilis, M. flava, M. stellaroides, Pratia angulata, P. nummularia, Wimmerella hederacea chloroplast, Carpodetus serratus Chloroplast, Cyphia volubilis chloroplast, Cyphia dentariifolia chloroplast, Cyphia angustiloba, Cyphia crenata Chloroplast, Cyphia digitata chloroplast, Cyphia tortilis chloroplast, Cyphia phyteuma chloroplast, Cyphia belfastica chloroplast, Brighamia insignis chloroplast, Porterella carnosula, Cyanea fissa chloroplast) Why? |
Knox | Indiana Univ. |
| Ciona intestinalis (sea squirt) Why? |
Lemaire | CNRS, France |
| Crassostrea gigas (oyster) | Hedgecock | Univ. of Sourthern California |
| Hydractinia symbiolongicarpus Why? |
Buss | Yale Univ |
| Ictalurus punctatus and I. Furcatus (catfish) Why? |
Liu-J | Auburn Univ. |
| Melampsora larici-populina (poplar rust) Why? |
Martin | Institut National de la Recherche Agronomique |
| Lake Malawi cichlid fish (Metriaclima zebra, Labeotropheus fuelleborni, Melanochromis auratus, Copadichromis conophorus, Rhamphochromis esox) Why? |
Kocher | Univ. of New Hampshire |
| Mycosphaerella fijiensis (cause of black Sigatoka ) Why? |
Goodwin | USDA-ARS, Purdue Univ |
| Mytilus californianus (California mussel) Why? |
Gracey | Stanford Univ. |
| Ostreococcus (green unicellular alga, low-light strain) Why? |
Palenik | UC San Diego |
| Parhyale hawaiensis and Jassa slatteryi (amphipod crustaceans) Why? |
Patel | UC Berkeley |
| Petrolisthes cinctipes (porcelain crab) Why? |
Stillman | San Francisco State Univ. |
| Phycomyces blakesleeanus Why? |
Corrochano | Univ. of Seville |
| Phytophthora capsici (root and crown rot) Why? |
Kingsmore | Natl. Ctr. for Genome Resources |
| Piromyces sp. E2 (a chytrid fungus) Why? |
Baker, S | Pacific Northwest Natl. Lab. |
| Trichoderma virens Why? |
Ebbole | Texas A&M Univ. |
| Triphysaria versicolor (a parasitic wildflower) Why? |
Yoder | UC Davis |
| Xanthoria parietina (a lichen fungus) Why? |
Crittendon | Univ. of Nottingham |
| Bacteria and Archaea | ||
| Acidovorax avenae subsp. Citrulli AAC00-1, Acidovorax JS42, Thermotoga RQ2, and Acidovorax symbiont (Verminephrobacter eiseniae EF01-2) Why? |
Stahl | Univ. of Washington |
| Verrucomicrobia (Akkermansia muciniphila, Chthoniobacter flavus Ellin428, bacterium Ellin 514, Opitutus terrae, and Victivallis vadensis ATCC BAA-548) Why? |
Smidt | Wageningen Univ. |
| Alaskan soil microbial community Why? |
Handelsman | Univ. of Wisconsin- Madison |
| Antarctic marine bacterioplankton Why? |
Murray | Desert Research Inst. |
| Bacillus coagulans 36D1 Why? |
Shanmugam | Univ. of Florida |
| Two caulobacter (Caulobacter sp. K31 and Maricaulis maris MCS10) Why? |
Stephens | Santa Clara Univ. |
| Crenarchaeote community (phylotype C1b.A1) Why? |
Simon | Oregon Health & Science Univ. |
| Euryarchaeota community Why? |
Baker, B | UC Berkeley |
| Six archaea (Halorubrum lacusprofundi ATCC 49239, Methanocorpusculum labreanum Z, Methanoculleus marisnigri JR1, Staphylothermus marinus F1, and Thermofilum pendens Why? |
Woese/ Anderson | Univ. of Illinois at Urbana- Champaign |
| Thermotogales (hyperthermophiles including Fervidobacterium nodosum Rt17-B1, Petrotoga mobilis SJ95, Thermosipho melanesiensis BI429, Thermotoga lettingae TMO, Thermotoga naphthophila, and Thermotoga petrophila RKU-1) Why? |
Noll | Univ. of Connecticut |
| Hypersaline microbial mats Why? |
Pace | Univ. of Colorado |
| Korarchaeota community (Candidatus Korarchaeum cryptofilum OPF8, two others) Why? |
Stetter/ Elkins | Univ. Regensberg, Diversa Corp. |
| Nitrosomonas (isolate IS-79 and oligotropha Nm45) Why? |
Norton | Utah State Univ. |
| Polynucleobacter necessarius STIR1 and Polynucleobacter sp. QWL-P1DMWA-1 pol_q Why? |
Hahn | Instit. for Limnology, Austria |
| Salinispora tropica CNB-440 and S. arenicola CNS205 (marine actinomycetes) Why? |
Jensen | Scripps Inst., UC San Diego |
| Sinorhizobium medicae WSM 419 Why? |
Reeve | Murdoch Univ. |
| Termite gut microbial community Why? |
Leadbetter | Caltech |
| Terephthalate (TA) degrading community Why? |
Liu/ Hugenholtz | Natl. Univ. of Singapore |
| Hyperthermophilic Archaeal Species (Thermoproteus neutrophilus V24Sta , Pyrobaculum aresenaticum DSM 13514, P. calidifontis, P. islandicum, Caldivirga maquilingensis IC-167) Why? |
Lowe | UC Santa Cruz |
| Opitutaceae bacterium TAV2 (ex. Verrucomicrobium sp. TAV2) Why? |
Schmidt/ Rodrigues | Michigan State Univ. |
Community Sequencing Program FY2005
| Organism | Proposer | Affiliation |
|---|---|---|
| Microbes | ||
| Olavius algarvensis symbionts Why? |
Dubilier | Max Planck Institute of Marine Microbiology |
| Crenarchaeota Why? |
Delong | MIT |
| Marinobacter aquaeolei VT8 Why? |
Edwards | Woods Hole Oceanographic Institution |
| Staphylococcus aureus subsp.
aureus JH1 and JH9 Why? |
Tomasz | Rockefeller University |
| Prochlorococcus ACM A12II Why? |
Chisholm | MIT |
| Rhodocyclus-like polyphosphate accum. Why? |
Hugenholtz | JGI |
| Rhodobacter sphaeroides ATCC17025 and ATCC17029 Why? |
Kaplan | University of Texas, Houston |
| Contaminated groundwater Why? |
Zhou | ORNL |
| Lactobacillus
reuteri strains 100-23 and F275 Why? |
Tannock | University of Otago, Dunedin, NZ |
| Ignicoccus hospitalis KIN4/I | Podar | Diversa |
| Bacillus cereus
subsp. cytotoxis NVH 391-98 and Bacillus weihenstephanensis KBAB4 Why? |
Sorokin | INRA, France |
| Basal Organisms | ||
| Selaginella moellendorffii Why? |
Banks | Purdue University |
| Trichoplax Why? |
DellaPorta | Yale University |
| Sporobolomyces roseus Why? |
Wolfe | Trinity College, Dublin |
| Reniera Why? |
Degnan | University of Queensland, Australia |
| Mycosphaerella graminicola Why? |
Goodwin | Purdue University |
| Spironucleus vortens and Naegleria gruberi Why? |
Cande | UC Berkeley |
| Higher Animals and Plants | ||
| Physcomitrella patens Why? |
Mishler | UC Berkeley |
| Lottia gigantea (limpet) Why? |
Edsinger-Gonzalez, Rokhsar, Lindberg | UC Berkeley, JGI |
| Helobdella robusta (leech) Why? |
Weisblat | UC Berkeley |
| Capitella sp. I Why? |
Seaver | University of Hawaii |
| ESTs and Targeted Sequencing | ||
| Alvinella pompejana Why? |
Tainer | Scripps Research Institute |
| Seed plant mitochondria (Amborella trichopoda, Citrullus lanatus watermelon, Cucumis melo (melon), Cucumis melo Iroquois, C. sativus, Cucurbita pepo zucchini, Digitalis purpurea, Liriodendron tulipifera, Plantago lanceolata, Pelargonium hortorum, Plantago media, Cucumis metulliferus, Vigna radiata) Why? |
Palmer | Indiana University, Bloomington |
| Karenia brevis Why? |
Bhattacharya | University of Iowa |
| Dipteran fosmids Why? |
Eisen | LBNL |
GEBA Sequencing Plans
| Organism | Domain | Phylum | Status | IMG-ER | NCBI PID | Culture ID | GOLD ID |
|---|---|---|---|---|---|---|---|
| Acidimicrobium ferrooxidans DSM 10331 | Bacteria | Actinobacteria | draft | DSM 10331 | Gi02326 | ||
| Actinosynnema mirum 101, DSM 43827 | Bacteria | Actinobacteria | draft | 2500395345 | 19705 | DSM 43827 | Gi02064 |
| Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 | Bacteria | Firmicutes | draft | 29405 | DSM 446 | Gi02324 | |
| Anaerococcus prevotii PC 1, DSM 20548 | Bacteria | Firmicutes | draft | DSM 20548 | Gi02318 | ||
| Atopobium parvulum IPP 1246, DSM 20469 | Bacteria | Actinobacteria | draft | 29401 | DSM 20469 | Gi02317 | |
| Beutenbergia cavernosa HKI 0122, DSM 12333 | Bacteria | Actinobacteria | draft | 2500395322 | 20827 | DSM 12333 | Gi02225 |
| Brachybacterium faecium DSM 4810 | Bacteria | Actinobacteria | finished | 2500153401 | 17026 | DSM 4810 | Gi02066 |
| Brachyspira murdochii DSM 12563 | Bacteria | Spirochaetes | draft | DSM 12563 | Gi02313 | ||
| Capnocytophaga ochracea DSM 7271 | Bacteria | Bacteroidetes | draft | 29403 | DSM 7271 | Gi02305 | |
| Catenulispora acidiphila ID139908, DSM 44928 | Bacteria | Actinobacteria | draft | 2500395338 | 21085 | DSM 44928 | Gi02233 |
| Cellulomonas flavigena 134, DSM 20109 | Bacteria | Actinobacteria | draft | 2500395336 | 19707 | DSM 20109 | Gi02067 |
| Chitinophaga pinensis UQM 2034, DSM 2588 | Bacteria | Bacteroidetes | draft | 2500395347 | 27951 | DSM 2588 | Gi02244 |
| Conexibacter woesei ID131577, DSM 14684 | Bacteria | Actinobacteria | draft | 2500347307 | 20745 | DSM 14684 | Gi02154 |
| Cryptobacterium curtum DSM 15641 | Bacteria | Actinobacteria | finished | 2500332002 | 20739 | DSM 15641 | Gi02234 |
| Denitrovibrio acetiphilus N2460, DSM 12809 | Bacteria | Deferribacteres | draft | 29431 | DSM 12809 | Gi02322 | |
| Desulfohalobium retbaense DSM 5692 | Bacteria | Delta proteobacteria |
draft | 29199 | DSM 5692 | Gi02246 | |
| Desulfomicrobium baculatum DSM 04028 | Bacteria | Delta proteobacteria |
draft | DSM 4028 | Gi02302 | ||
| Desulfotomaculum acetoxidans 5575, DSM 771 | Bacteria | Firmicutes | draft | 2500395337 | 27947 | DSM 771 | Gi02239 |
| Dethiosulfovibrio peptidovorans SEBR 4207, DSM 11002 | Bacteria | Aminanaerobia | draft | 2500549401 | 20741 | DSM 11002 | Gi02152 |
| Dyadobacter fermentans NS 114, DSM 18053 | Bacteria | Bacteroidetes | draft | 2500395342 | 20829 | DSM 18053 | Gi02155 |
| Eggerthella lenta VPI 0255, DSM 2243 | Bacteria | Actinobacteria | draft | 2500549402 | 21093 | DSM 2243 | Gi02242 |
| Geodermatophilus obscurus DSM 43160 | Bacteria | Actinobacteria | draft | DSM 43160 | Gi02257 | ||
| Gordonia bronchialis DSM 43247 | Bacteria | Actinobacteria | draft | DSM 43247 | Gi02258 | ||
| Haliangium ochraceum SMP-2, DSM 14365 | Bacteria | Delta proteobacteria |
draft | 2500395339 | 28711 | DSM 14365 | Gi02251 |
| Halogeometricum borinquense DSM 11551 | Archaea | Halobacteria | finished | 2500153400 | 20743 | DSM 11551 | Gi02153 |
| Halomicrobium mukohataei arg-2, DSM 12286 | Archaea | Halobacteria | draft | 2500395343 | 27945 | DSM 12286 | Gi02248 |
| Halorhabdus utahensis AX-2, DSM 12940 | Archaea | Halobacteria | draft | 29305 | DSM 12940 | Gi02250 | |
| Jonesia denitrificans DSM 20603 | Bacteria | Actinobacteria | draft | 2500168153 | 20833 | DSM 20603 | Gi02227 |
| Kangiella koreensis SW-125, DSM 16069 | Bacteria | Gamma proteobacteria |
draft | 29443 | DSM 16069 | Gi02314 | |
| Kribbella flavida DSM 17836 | Bacteria | Actinobacteria | draft | 2500395325 | 21089 | DSM 17836 | Gi02235 |
| Kytococcus sedentarius DSM 20547 | Bacteria | Actinobacteria | finished | 2500168150 | 21067 | DSM 20547 | Gi02226 |
| Leptotrichia buccalis C-1013-b, DSM 1135 | Bacteria | Fusobacteria | draft | DSM 1135 | Gi02240 | ||
| Meiothermus ruber DSM 1279 | Bacteria | Deinococci | draft | 2500395348 | 28827 | DSM 1279 | Gi02300 |
| Meiothermus silvanus DSM 9946 | Bacteria | Deinococci | draft | DSM 9946 | Gi02308 | ||
| Nakamurella multipartita DSM 44233 | Bacteria | Actinobacteria | draft | 21081 | DSM 44233 | Gi02230 | |
| Nocardiopsis dassonvillei dassonvillei DSM 43111 | Bacteria | Actinobacteria | draft | 2500395320 | 19709 | DSM 43111 | Gi02065 |
| Pedobacter heparinus HIM 762-3, DSM 2366 | Bacteria | Bacteroidetes | draft | 2500395321 | 27949 | DSM 2366 | Gi02243 |
| Planctomyces limnophilus DSM 3776 | Bacteria | Bacteroidetes | draft | 29411 | DSM 3776 | Gi02301 | |
| Rhodothermus marinus DSM 4252 | Bacteria | Bacteroidetes | draft | 29281 | DSM 4252 | Gi02303 | |
| Saccharomonospora viridis P101, DSM 43017 | Bacteria | Actinobacteria | finished | 2500347305 | 20835 | DSM 43017 | Gi02228 |
| Sanguibacter keddieii DSM 10542 | Bacteria | Actinobacteria | finished | 2500153403 | 19711 | DSM 10542 | Gi02151 |
| Sebaldella termitidis ATCC 33386 | Bacteria | Fusobacteria | draft | ATCC 33386 | Gi02490 | ||
| Slackia heliotrinireducens DSM 20476 | Bacteria | Actinobacteria | finished | 2500168151 | 20831 | DSM 20476 | Gi02157 |
| Sphaerobacter thermophilus 4ac11, DSM 20745 | Bacteria | Chloroflexi | draft | 2500347306 | 21087 | DSM 20745 | Gi02236 |
| Spirosoma linguale DSM 74 | Bacteria | Bacteroidetes | draft | 2500395346 | 28817 | DSM 74 | Gi02298 |
| Stackebrandtia nassauensis LLR-40K-21, DSM 44728 | Bacteria | Actinobacteria | draft | 2500549403 | 19713 | DSM 44728 | Gi02068 |
| Streptobacillus moniliformis DSM 12112 | Bacteria | Fusobacteria | draft | 29309 | DSM 12112 | Gi02312 | |
| Streptosporangium roseum NI 9100, DSM 43021 | Bacteria | Actinobacteria | draft | 2500395335 | 21083 | DSM 43021 | Gi02229 |
| Sulfurospirillum deleyianum DSM 6946 | Bacteria | Epsilon proteobacteria |
draft | DSM 6946 | Gi02323 | ||
| Thermanaerovibrio acidaminovorans Su883 DSM 6589 | Bacteria | Aminanaerobia | draft | DSM 6589 | Gi02247 | ||
| Thermobaculum terrenum YNP1, ATCC BAA-798 | Bacteria | Chloroflexi | draft | ATCC BAA-798 | Gi02489 | ||
| Thermobispora bispora DSM 43833 | Bacteria | Actinobacteria | finished | 2500194801 | 20737 | DSM 43833 | Gi02237 |
| Thermomonospora curvata DSM 43183 | Bacteria | Actinobacteria | draft | 20825 | DSM 43183 | Gi02238 | |
| Tsukamurella paurometabola DSM 20162 | Bacteria | Actinobacteria | draft | 29399 | DSM 20162 | Gi02254 | |
| Veillonella parvula Te3, DSM 2008 | Bacteria | Firmicutes | draft | 2500347300 | 21091 | DSM 2008 | Gi02241 |
| Xylanimonas cellulosilytica DSM 15894 | Bacteria | Actinobacteria | draft | 2500153402 | 19715 | DSM 15894 | Gi02069 |
Laboratory Science Program Small-Scale Sequencing
| Organism | Proposer | Affiliation |
|---|---|---|
| Five Archaea (Methanohalobium evestigatum, Methanobacterium formicicum, Halococcoides, Ferroglobus placidus, and Acidianus sp. JP7) | Kyrpides | LBNL |
| Aspergillus terreus EST | Baker | PNNL |
| Avena Barbata ESTs | Anderson | BNL |
| Burkholderia cepacia Bu72 | van der Lelie | BNL |
| ChIP-enriched binding sequences | Stubbs | LLNL |
| CRISPR loci of Leptospirillum | Banfield | |
| Cochliobolus heterostrophus | Turgeon | Cornell University |
| Columbia River Microbiota | Magnuson | PNNL |
| Dehalococcoides | Brodie | LBNL |
| Etolico Lagoon in Greece | Kyrpides | LBNL |
| Fungal comparative genomics (Orpinomyces) | Baker | PNNL |
| Hypersaline microbial mat | Raymond | LLNL |
| Leonotis nepetifolia | Shanklin | BNL |
| Low Dose DiTags | Anderson | BNL |
| Medaka Fish | Glenn | SRNL |
| Microbial community actively decaying poplar biomass | van der Lelie | BNL |
| Microbial diversity in tropical and temperate forests | Pett-Ridge | LLNL |
| Microcoleus vaginatus FGP-2 | Kuske | LANL |
| New Orleans Floodwaters | Andersen | LBNL |
| Nuclear matrix attachment regions (MARs) | Doggett | LANL |
| Peromyscus | Glenn | SRNL |
| Phycomyces blakesleeanus | Baker | PNNL |
| Poplar in Response to Dehydration | Yang | ORNL |
| Prunus persica | Rokhsar | LBNL |
| Soluble protein domains | Terwilliger | LANL |
| Tallgrass Prairie soil | Bailey | PNNL |
| Grass-feeding termite hindgut communities | Hugenholtz | LBNL |
| Thielavia terrestris | Berka | Novozymes |
| Tremella mesenterica | Heitman | Duke University |
| Viruses in nasopharyngeal swab samples from healthy subjects | Mariella | LLNL |
| 454 Sequencing of Viruses | Han | LANL |
| Yellowstone Archaeal Virus Community (Nymph Lake and Crater Hills) | Roberto | INL |
DOE Microbial Genome Program FY2007
| Organism(s) | Est. Genome Size |
|---|---|
| Acremonium alcalophilum ATCC90507 | 40 MB |
| Azolla Cyanobacterium, Arthrospira maxima, and Cyanobacterium JSC-1 | NA |
| bacterioplankton pool cDNA day, night, night + DOC1, night + DOC2 | NA |
| Clostridum carboxidivorans, Clostridium sp. strains, Clostridium straminisolvens, Clostridum thermocellum LQR1 DSM2360 , Clostridium thermocellum JW20 DSM 4150 Thermoanaerobacter italicus Ab9 DSM9252, T. ethanolicus X513, T. ethanoloicus X561, T. mathrani, Thermoanaerobacterium thermosaccharaolyticum, Thermoanaerobacterium xylanolyticum LX11 DSM7097 |
3.5-4.0 MB |
| Cyanobiont in Azolla | NA |
| Elephant Grass Decomposer Community | NA |
| Exiguobacterium sp. AT1b, Exiguobacterium sibiricum 255-15 | NA |
| Flavobacteria sp. MS024-2A, Flavobacteria sp. MS0243-3C, Flavobacteria sp. MS311-3, Flavobacteria sp. MS190-1F, Lynne Flavobacteria sp. MS220-5C | NA |
| Geobacillus sp. G11MC16, sp. WCH70, sp. Y412MC10 | 6.4 MB |
| Gluconacetobacter diazotrophicus 448, G.d. PAI 5 | NA |
| Gut consortium of Anoplophora glabripennis | NA |
| Kosmotoga olearia TB 19.5.1 | NA |
| Lactobacillus buchneri B-30929 and NRRL B30929 | NA |
| Lost City Methanosarcinales | 3 MB |
| Methanosphaerula palustris E1-9c | NA |
| Mucor circinelloides CBS277.49 | 36.05 MB |
| Paenibacillus sp. JDR-2 | NA |
| Pelotomaculum schinkii strain HH | 3 MB |
| Phanerochaete carnosa | 35 MB |
| Rhodosporidium babjevae WP1 | 20 MB |
| Serpula lacrymans | 25 MB |
| Sporotrichum thermophile ATCC42464 | 43 MB |
| Thermoacetogenium phaeum | |
| Tipula abdominalis gut | NA |
| Tropical picophytoeukaryotes site 1, site 2, site 3 | NA |
DOE Microbial Genome Program FY2006
| Organism(s) | Est. Genome Size |
|---|---|
| Anaeromyxobacter dehalogenans strain 2CP-1 | 5 MB |
| Acidithiobacillus ferrooxidans ATCC 53993 | |
| Anaeromyxobacter sp. Fw109-5 | 5 MB |
| Anaeromyxobacter sp. K | 5 MB |
| Bison Pool, hydrothermal ecosystem | NA |
| Burkholderia ambifaria MC40-6 | 7.4 MB |
| Burkholderia cenocepacia MC0-3 | 7.9 MB |
| Burkholderia multivorans ATCC 17616 | 6.8 MB |
| Burkholderia phymatum STM815 | 8.9 MB |
| Burkholderia phytofirmans PsJN | 8 MB |
| Chlorella sp. NC64A | 40 MB |
| Chlorella vulgaris C-169 | 40 MB |
| Clostridium cellulolyticum H10 | 5 MB |
| Comamonas testosteroni KF-1 | 6 MB |
| Dehalococcoides sp. Strain GT | 1.5 MB |
| Delftia acidovorans SPH-1 | 6 MB |
| Desulfatibacillum alkenivorans AK-01 | 6 MB |
| Desulfococcus oleovorans Hxd3 | 6 MB |
| Dictyostelium purpureum | 34 MB |
| Dinoroseobacter shibae DFL-12 | 6 MB |
| Dunaliella salina UTEX | 130 MB |
| Enterobacter sp. 638 , | 5 MB |
| Escherichia coli C str. ATCC 8739 | 4 MB |
| Geobacter Lovleyi SZ | 4 MB |
| Leptospirillum ferroxidans Markosian | 2.5 MB |
| Marinomonas sp. strain MWYL1 | 5 MB |
| Metallosphaera sedula DSM 5348 | 1.89 MB |
| Methanococcus aeolicus Nankai-3 | 2 MB |
| Methanococcus maripaludis C5 | 2 MB |
| Methanococcus maripaludis C6 | 2 MB |
| Methanococcus maripaludis C7 | 2 MB |
| Methanococcus vannielii SB | 2 MB |
| Methanococcus voltae A3 | 2 MB |
| Methanoregula boonei 6A8 | 3 MB |
| Methylobacterium chloromethanicum CM4 | 7 MB |
| Methylobacterium extorquens PA1 | 7 MB |
| Methylobacterium nodulans ORS 2060 | 7 MB |
| Methylobacterium populi BJ001 | 7 MB |
| Methylobacterium radiotolerans JCM 2831 | 7 MB |
| Methylobacterium sp. 4-46 | 7 MB |
| Methylotroph strain L1N13 | 10 MB |
| Nitrosopumilus maritimus SCM1 | 3 MB |
| Parvibaculum lavamentivorans DS-1 | 6 MB |
| Plasmids in prokaryotes | 7 MB |
| Poplar endophytic bacteria (Pseudomonas putida strain W619, Serratia proteamaculans 568, Stenotrophomonas maltophilia R551-3) | 37.3 MB |
| Prochlorococcus, its phages, and the surrounding microbial community at the Hawaii Ocean Times Series Station (HOT) | 2 GB |
| Pseudomonas mendocina strain ymp | 4.6 MB |
| Pseudomonas putida strain GB-1 | 6 MB |
| Pseudo-nitzschia (diatom) | 250 MB |
| Ralstonia pickettii 12D | 3 MB |
| Ralstonia pickettii 12J | 3.5 MB |
| Rice endophyte metagenome | 100 MB |
| Schizophyllum commune | 38 MB |
| Shewanella halifaxensis HAW-EB4 | 5 MB |
| Shewanella pealeana ATCC 700345 | 5 MB |
| Shewanella sediminis HAW-EB3 | 5 MB |
| Shewanella woodyi ATCC 51908 | 5 MB |
| Sphingomonas wittichii Strain RW1 | 5 MB |
| Sulfolobus islandicus strains (eight) | 24 MB |
| Thermosinus carboxydivorans Nor1 | 3 MB |
| Trichoderma actroviride | 40 MB |
DOE Microbial Genome Program FY2005
Strains of Shewanella
| Organism | Est. Genome Size |
|---|---|
| Shewanella baltica OS195 | 5 Mb |
| Shewanella sp. ANA-3 | 5 Mb |
| Shewanella sp. MR-4 | 5 Mb |
| Shewanella sp. MR-7 | 5 Mb |
| Shewanella sp. W3-18-1 | 5 Mb |
| Shewanella baltica OS223 | 5 Mb |
Strains of Chloroflexi
| Organism | Est. Genome Size |
|---|---|
| Chloroflexus aggregans DSM 9485 | 5 Mb |
| Chloroflexus sp. Y-396-1 | 5 Mb |
| Chlorothrix halophila (Candidatus) | 5 Mb |
| Herpetosiphon aurantiacus DSM 785 | 5 Mb |
| Roseiflexus castenholzii HLO8 | 5 Mb |
| Roseiflexus sp. strain RS-1 | 5 Mb |
| Chloroflexus sp. Y-400-fl |
Strains of Rhodopseudomonas palustris
| Organism | Est. Genome Size |
|---|---|
| R. palustris BisA53 | 5.5 Mb |
| R. palustris BisB5 | 4.9 Mb |
| R. palustris BisB18 | 5.5 Mb |
| R. palustris HaA2 | 5.5 Mb |
Organisms Involved in Microbial Arsenic Transformation
| Organism | Est. Genome Size |
|---|---|
| Bacillus selenitireducens MLS-10 | 2-4 Mb |
| Mono Lake Deltaproteobacter MLMS-1 | 6.06 Mb |
| Alkaliphilus oremlandii OhILAs | 2-4 Mb |
| Alkalilimnicola ehrlichei MLHE-1 | 2-4 Mb |
Two species of Micromonas pusilla
| Organism | Est. Genome Size |
|---|---|
| M. pusilla NOUM17(RCC 299) | 15 Mb |
| M. pusilla CCMP1545 | 15 Mb |
Single microbes
| Organism | Est. Genome Size |
|---|---|
| Acidiphilium cryptum JF-5 | 2.46 Mb |
| Acidobacteria bacterium Ellin 345 | 3 Mb |
| Acidothermus cellulolyticus 11B | 6 Mb |
| Actinobacillus succinogenes 130Z | 2 Mb |
| Aspergillus niger | 32 Mb |
| Aureococcus anophagefferens | 32 Mb |
| Bradyrhizobium sp. BTAi1 | 9.2 Mb |
| Burkholderia cepacia AMMD | 7.2 Mb |
| Caldicellulosiruptor saccharolyticus DSM 8903 | 4.3 Mb |
| Candidatus Ruthia magnifica Cm (Proteobacterial symbiont of the clam Calyptogena magnifica) | 4 Mb |
| Dehalococcoides sp. BAV1 | 2 Mb |
| Dehalococcoides sp. VS | 1.5 Mb |
| Desulfotomaculum reducens MI-1 | 4 Mb |
| Flavobacterium johnsoniae UW101 | 6.07 Mb |
| Geobacter sp. FRC-32 | 5 Mb |
| Halorhodospira halophila SL1 | 4 Mb |
| Methanosaeta thermophila PT | 3 Mb |
| Mycobacterium gilvum PYR-GCK | 5 Mb |
| Mycobacterium vanbaalenii PYR-1 | 6.46 Mb |
| Nectria haematococca MPVI | 40 Mb |
| Polaromonas naphthalenivorans CJ2 | 6 Mb |
| Postia Placenta | 40 Mb |
| Pseudoalteromonas atlantica T6c | 3.5 Mb |
| Pseudomonas putida F1 | 6.2 Mb |
| Psychromonas ingrahamii | 4 Mb |
| Xanthobacter autotrophicus Py2 | 5 Mb |
Communities
| Organism |
|---|
| Microbial Population from The Cedars (California) |
| Acid mine drainage community (Iron Mountain, California) |
| Obsidian Hot Spring (Yellowstone: Alicyclobacillus sp., Dictyoglomus turgidum, Geobacillus sp Y412MC61, Geobacillus sp. Y412MC52, Hydrogenobaculum strain Y04AAS1, Mixed Community, Sulfolobus solfataricus 98/2, Sulfurihydrogenibium sp. Y03AOP1, Thermareobacter sp. Y412MC57) |
| PAH Degrading Mycobacteria (Mycobacterium sp. MCS, JLS, and KMS |
| Active methylotroph community from Lake Washington |
DOE Microbial Genome Program FY2004
Chlorobia (avg:~2.4Mb)
| Organism | Genome Size |
|---|---|
| Chlorobium ferrooxidans DSM 13031 | 2.40 Mb |
| Chlorobium limicola DSMZ 245 | 2.4 Mb |
| Chlorobium phaeobacteroides BS1 | 2.4 Mb |
| Chlorobium phaeobacteroides DSM 266 | 2.3 Mb |
| Pelodictyon luteolum DSMZ 273 | 2.3 Mb |
| Pelodictyon phaeoclathratiforme BU-1 (DSM 5477) | 2.4 Mb |
| Prosthecochloris aestuarii DSM 271 | 2.4 Mb |
| Prosthecochloris vibrioformis DSM 265 | 2.4 Mb |
| Chlorobaculum parvum | n/a |
| Chloroherpeton thalassium | n/a |
Model Syntrophic Consortium
| Organism | Genome Size |
|---|---|
| Syntrophobacter fumaroxidans MPOB | 3.3 Mb |
| Syntrophomonas wolfei Göttingen (DSM 2245B) | 3 Mb |
| Methanospirillum hungatei JF1 | 3.70 Mb |
Facultative Metal-reducing Gamma proteobacteria
| Organism | Genome Size |
|---|---|
| Shewanella amazonensis SB2B | 4.40 Mb |
| Shewanella baltica OS155 | 5.20 Mb |
| Shewanella baltica OS185 | |
| Shewanella denitrificans OS217 | 4.70 Mb |
| Shewanella frigidimarina NCIMB 400 | 4.90 Mb |
| Shewanella putrefaciens 200 | 4.5 Mb |
| Shewanella putrefaciens CN-32 | 4.5 Mb |
| Shewanella loihica PV-4 | 4.5 Mb |
Five bacteria involved in nitrification
| Organism | Genome Size |
|---|---|
| Nitrobacter hamburgensis X14 | 5.011530 Mb |
| Nitrobacter winogradskyi Nb-255 | 3.40 Mb |
| Nitrosococcus oceani ATCC 19707 | 3.5 Mb |
| Nitrosomonas eutropha C71 | 2.70 Mb |
| Nitrosospira multiformis ATCC 25196 | 3.20 Mb |
Single microbes
| Organism | Genome Size |
|---|---|
| Alkaliphilus metalliredigenes QYMF | 4.5 Mb |
| Anaeromyxobacter dehalogenans 2CP-C | 5.20 Mb |
| Arthrobacter sp. FB24 | 5.20 Mb |
| Bath hot springs metagenome and thermophages Y4.1MC1, Y4.1MC4, and Y5.1MC23 | |
| Burkholderia cenocepacia AU 1054 | 7.30 Mb |
| Burkholderia cenocepacia HI2424 | 7.70 Mb |
| Chromohalobacter salexigens DSM 3043 | 3.90 Mb |
| Clostridium beijerincki NCIMB 8052 | 7.80 Mb |
| Clostridium phytofermentans ISDg | 5 Mb |
| Deinococcus geothermalis DSM 11300 | 3 Mb |
| Frankia sp. CcI3 | 5.43 Mb |
| Frankia sp. EAN1pec | 10 Mb |
| Jannaschia sp. CCS1 | 4.5 Mb |
| Nocardioides sp. JS614 | 5.5 Mb |
| Paracoccus denitrificans PD1222 | 3.70 Mb |
| Polaromonas sp. JS666 | 5.20 Mb |
| Prochlorococcus marinus NATL2A | 2 Mb |
| Psychrobacter cryohalolentis K5 | 3.20 Mb |
| Silicibacter sp. TM1040 | 3.20 Mb |
| Solibacter usitatus Ellin6076 | 10.20 Mb |
| Sphingopyxis alaskensis RB2256 | 3.20 Mb |
| Sulfurimonas denitrificans DSM 1251 | 2.20 Mb |
| Synechococcus sp. CC9605 (oligotrophic) | 2.5 Mb |
| Synechococcus sp. CC9902 (coastal) | 2.5 Mb |
| Thermoanaerobacter pseudethanolicus 39E | 3 Mb |
| Thermoanaerobacter sp. X514 | 3 Mb |
| Thermus aquaticus Y51MC23 | |
| Thiobacillus denitrificans ATCC 25259 | 3 Mb |
| Thiomicrospira crunogena XCL-2 | 2.40 Mb |
Eukaryotes
| Organism | Genome Size |
|---|---|
| Glomus intraradices | 15 Mb |
| Laccaria bicolor | 40 Mb |
| Pichia stipitis, CBS 6054 | 12 Mb |
Communities
| Organism | Genome Size |
|---|---|
| 200 BACs from anaerobic bioreactor granules | ~100 Mb |
| acid mine drainage community | ~80 Mb |
| Picoplankton BACS from HOTS site | ~150 Mb |
| Boiling thermal pool | ~50 Mb |
DOE Microbial Genome Program FY2003
Eukaryotes
| Organism | Genome Size |
|---|---|
| Emiliania huxleyi | 220 Mb |
| Ostreococcus lucimarinus | 9.3 Mb |
| Monosiga brevicollis |
Bacteria
| Organism | Genome Size |
|---|---|
| Anabaena variabilis ATCC 29413 | 7 Mb |
| Burkholderia sp. 383 | 8.80 Mb |
| Burkholderia vietnamiensis G4 | 8.40 Mb |
| Chlorobium aggregatum | |
| Chlorobium chlorochromatii CaD3 | 2.6 Mb |
| Chlorochromatium aggregatum Lake Dagow | |
| Crocosphaera watsonii WH 8501 | 6.40 Mb |
| Kineococcus radiotolerans SRS30216 | 4.90 Mb |
| Methylibium petroleiphilum PM1 | 4.60 Mb |
| Methylobacillus flagellatus KT | 2.80 Mb |
| Moorella thermoacetica ATCC 39073 | 2.60 Mb |
| Prochlorococcus marinus str. MIT 9312 | 2.40 Mb |
| Rubrobacter xylanophilus DSM 9941 | 3.20 Mb |
| Synechococcus elongatus PCC7942 | 2.70 Mb |
Communities
| Organism |
|---|
| Acid Mine Drainage community |
DOE Microbial Genome Program FY2002
Eukaryotes
| Organism | Genome Size |
|---|---|
| Thalassiosira pseudonana CCMP 1335 (diatom) | 32 Mb |
Lactic Acid Bacteria
| Organism | Genome Size |
|---|---|
| Bifidobacterium longum DJO10A | 2.4 Mb |
| Brevibacterium linens BL2 | 4.5 Mb |
| Lactobacillus brevis ATCC 367 | 1.8 Mb |
| Lactobacillus casei ATCC 334 | 2.8 Mb |
| Lactobacillus delbrueckii ATCC BAA-365 | 1.6 Mb |
| Lactobacillus gasseri ATCC 33323 | 1.9 Mb |
| Lactococcus lactis subsp. cremoris SK11 | 2.6 Mb |
| Leuconostoc mesenteroides ATCC 8293 | 2 Mb |
| Oenococcus oeni PSU-1 | 1.8 Mb |
| Pediococcus pentosaceus ATCC 25745 | 1.8 Mb |
| Streptococcus thermophilus LMD-9 | 1.8 Mb |
Single Microbes
| Organism | Genome Size |
|---|---|
| Azotobacter vinelandii AvOP | 5.33 Mb |
| Clostridium thermocellum ATCC 27405 | 3.80 Mb |
| Dechloromonas aromatica RCB | 4.5 Mb |
| Desulfovibrio desulfuricans G20 | 3.73 Mb |
| Desulfuromonas acetoxidans DSM 684 | 4.1 Mb |
| Ehrlichia canis Jake | 1.60 Mb |
| Ehrlichia chaffeensis Sapulpa | 1.80 Mb |
| Exiguobacterium sibiricum 255-15 | 3.10 Mb |
| Geobacter metallireducens GS-15 | 4.30 Mb |
| Haemophilus somnus 129PT | 2.00 Mb |
| Haemophilus somnus 2336 | |
| Mesorhizobium sp. BNC1 | 5 Mb |
| Methanococcoides burtonii DSM 6242 | 2.60 Mb |
| Pseudomonas syringae B728a | 6.10 Mb |
| Psychrobacter arcticus 273-4 | 2.60 Mb |
| Ralstonia eutropha JMP-134 | 7.25 Mb |
| Rhodospirillum rubrum ATCC 11170 | 4.40 Mb |
| Saccharophagus degradans 2-40 | 5.10 Mb |
| Streptococcus suis 89/1591 | 2 Mb |
| Trichodesmium erythraeum IMS101 | 7.80 Mb |
| Yersinia pestis Pestoides F | 4.73 Mb |
Community
| Organism |
|---|
| Anaerobic Methane Oxidizing community |
DOE Microbial Genome Program FY2001
| Organism | Genome Size |
|---|---|
| Burkholderia xenovorans LB400 | 8 Mb |
| Chloroflexus aurantiacus J-10-fl | 3 Mb |
| Cupriavidus metallidurans CH34 | 6.8 Mb |
| Cytophaga hutchinsonii ATCC 33406 | 4.4 Mb |
| Desulfitobacterium halfniense DCB-2 | 4.7 Mb |
| Enterococcus faecium DO | 2.8 Mb |
| Ferroplasma acidarmanus fer1 | 1.8 Mb |
| Magnetococcus sp. MC-1 | 4.7 Mb |
| Methanosarcina barkerii fusaro | 4.8 Mb |
| Nitrosomonas europaea ATCC 19718 | 2.8 Mb |
| Nostoc punctiforme PCC 73102 | 9.2 Mb |
| Novosphingobium aromaticivorans DSM 12444 | 4.2 Mb |
| Prochlorococcus marinus MED4 | 1.66 Mb |
| Prochlorococcus marinus MIT9313 | 2.4 Mb |
| Pseudomonas fluorescens PfO-1 | 6.7 Mb |
| Rhodobacter sphaeroides 2.4.1 | 4.6 Mb |
| Rhodopseudomonas palustris CGA009 | 5.5 Mb |
| Synechococcus sp. WH8102 | 2.4 mb |
| Thermobifida fusca YX | 3.6 Mb |
| Xylella fastidiosa Ann-1 | 5.1 Mb |
| Xylella fastidiosa Dixon | 2.6 Mb |
DOE Genomics: GTL Program
| Organism | Est. Genome Size |
|---|---|
| Desulfitobacterium hafniense DCB-2 DSM 10664 | |
| South African Gold Mine Metagenome (Candidatus Desulforudis audaxviator MP104C) | |
| Desulfovibrio desulfuricans 27774 | |
| Desulfovibrio fructosovorans | |
| Desulfovibrio hanfordii | |
| Desulfovibrio salexigens | |
| Desulfovibrio vulgaris Miyazaki F | 3.57 Mb |
| Desulfovibrio vulgaris subsp. vulgaris DP4 | 3.64 Mb |
| Geobacter bemidjiensis Bem | |
| Geobacter sulfurreducens | |
| Geobacter uraniireducens Rf4 | 4.9 Mb |
| Geobacter sp. M18 | |
| Geobacter sp. M21 | |
| Geobacter sp. M22 | |
| Pelobacter carbinolicus | 7.2 Mb |
| Pelobacter propionicus DSM 2379 | 7.2 Mb |
| Prochlorococcus marinus HOT_152-C11 | |
| Rhodoferax ferrireducens DSM 15236 | 4.969788 Mb |
| Switchgrass ESTs | |
| Geobacter Uranium Bioremediation Community D07-1 |
DOE Sequencing Projects
| Organism | Est. Genome Size |
|---|---|
| Branchiostoma floridae (Florida lancelet) | 600 Mb |
| Chlamydomonas reinhardtii (a green alga) (improve existing genome) Why? |
100 Mb |
| Ciona (sea squirt) fosmids (improve existing genome) Why? |
180 Mb |
| Daphnia pulex (water flea) | 200 Mb |
| Fugu rubripres (puffer fish) (fosmid) Why? |
400 Mb |
| Glycine Max (soybean) Why? |
1115 Mb |
| Homo sapiens chromosome 5 Why? |
180.8 Mb |
| Homo sapiens chromosome 16 Why? |
88.7Mb |
| Homo sapiens chromosome 19 Why? |
63.8 Mb |
| Nematostella vectensis (burrowing anemone) | 340 Mb |
| Phakopsora pachyrhizi (soybean rust pathogen) | 50 Mb |
| Phytophthora sojae (soybean blight pathogen) Why? |
62 Mb |
| Phytophthora ramorum (sudden oak death pathogen) Why? |
60 Mb |
| Phaeodactylum tricornutum (a diatom) | 30 Mb |
| Phanerochaete chrysosporium (white rot fungus) Why? |
30 Mb |
| Populus trichocarpa (black cottonwood) Why? |
550 Mb |
| Trichoderma reesei (a filamentous fungus) Why? |
30 Mb |
| Xenopus tropicalis (western clawed frog) (improve existing genome to ~7.5x) Why? |
1.7 Gb |
| Zea mays (corn) | 2.2 Gb |
