FY2005 Sequencing for the
DOE Microbial Genome Program
For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce.
Strains of Shewanella
Organism |
Est. Genome Size |
Shewanella baltica OS195 |
5 Mb |
Shewanella sp. ANA-3 |
5 Mb |
Shewanella sp. MR-4 |
5 Mb |
Shewanella sp. MR-7 |
5 Mb |
Shewanella sp. W3-18-1 |
5 Mb |
Shewanella baltica OS223 |
5 Mb |
Strains of Chloroflexi
Organism |
Est. Genome Size |
Chloroflexus aggregans DSM 9485 |
5 Mb |
Chloroflexus sp. Y-396-1 |
5 Mb |
Chlorothrix halophila (Candidatus) |
5 Mb |
Herpetosiphon aurantiacus DSM 785 |
5 Mb |
Roseiflexus castenholzii HLO8 |
5 Mb |
Roseiflexus sp. strain RS-1 |
5 Mb |
Chloroflexus sp. Y-400-fl |
|
Strains of Rhodopseudomonas palustris
Organism |
Est. Genome Size |
R. palustris BisA53 |
5.5 Mb |
R. palustris BisB5 |
4.9 Mb |
R. palustris BisB18 |
5.5 Mb |
R. palustris HaA2 |
5.5 Mb |
Organisms Involved in Microbial Arsenic Transformation
Organism |
Est. Genome Size |
Bacillus selenitireducens MLS-10 |
2-4 Mb |
Mono Lake Deltaproteobacter MLMS-1 |
6.06 Mb |
Alkaliphilus oremlandii OhILAs |
2-4 Mb |
Alkalilimnicola ehrlichei MLHE-1 |
2-4 Mb |
Two species of Micromonas pusilla
Organism |
Est. Genome Size |
M. pusilla NOUM17(RCC 299) |
15 Mb |
M. pusilla CCMP1545 |
15 Mb |
Single microbes
Organism |
Est. Genome Size |
Acidiphilium cryptum JF-5 |
2.46 Mb |
Acidobacteria bacterium Ellin 345 |
3 Mb |
Acidothermus cellulolyticus 11B |
6 Mb |
Actinobacillus succinogenes 130Z |
2 Mb |
Aspergillus niger |
32 Mb |
Aureococcus anophagefferens |
32 Mb |
Bradyrhizobium sp. BTAi1 |
9.2 Mb |
Burkholderia cepacia AMMD |
7.2 Mb |
Caldicellulosiruptor saccharolyticus DSM 8903 |
4.3 Mb |
Candidatus Ruthia magnifica Cm (Proteobacterial symbiont of the clam Calyptogena magnifica) |
4 Mb |
Dehalococcoides sp. BAV1 |
2 Mb |
Dehalococcoides sp. VS |
1.5 Mb |
Desulfotomaculum reducens MI-1 |
4 Mb |
Flavobacterium johnsoniae UW101 |
6.07 Mb |
Geobacter sp. FRC-32 |
5 Mb |
Halorhodospira halophila SL1 |
4 Mb |
Methanosaeta thermophila PT |
3 Mb |
Mycobacterium gilvum PYR-GCK |
5 Mb |
Mycobacterium vanbaalenii PYR-1 |
6.46 Mb |
Nectria haematococca MPVI |
40 Mb |
Polaromonas naphthalenivorans CJ2 |
6 Mb |
Postia Placenta |
40 Mb |
Pseudoalteromonas atlantica T6c |
3.5 Mb |
Pseudomonas putida F1 |
6.2 Mb |
Psychromonas ingrahamii |
4 Mb |
Xanthobacter autotrophicus Py2 |
5 Mb |
Communities
Organism |
Microbial Population from The Cedars (California) |
Acid mine drainage community (Iron Mountain, California) |
Obsidian Hot Spring (Yellowstone: Alicyclobacillus sp., Dictyoglomus turgidum, Geobacillus sp Y412MC61, Geobacillus sp. Y412MC52, Hydrogenobaculum strain Y04AAS1, Mixed Community, Sulfolobus solfataricus 98/2, Sulfurihydrogenibium sp. Y03AOP1, Thermareobacter sp. Y412MC57) |
PAH Degrading Mycobacteria (Mycobacterium sp. MCS, JLS, and KMS |
Active methylotroph community from Lake Washington |