MGI-Mouse Gene Expression Database (GXD)

Gene Expression Database (GXD)
GXD collects and integrates the gene expression information in MGI. Its primary emphasis is on endogenous gene expression during mouse development.

Please take our survey about the Gene Expression Database. Click here to take the survey.
Access Data Search for references on gene expression during development. Gene Expression Literature Query Search for detailed gene expression assay results. Gene Expression Data Query Search for genes expressed in some anatomical structures and/or developmental stages but not in others. Gene Expression Data Expanded Query Search or browse for anatomical structures; includes links to associated expression results. Mouse Anatomical Dictionary Browser Search the Edinburgh Mouse Atlas for anatomical terms and query for associated expression data. EMAGE Anatomical Section Browser Search for expression information based on tissue or cell-line origin of cDNAs. cDNA Clone Query	FAQs How do I... .. find expression data for a specific gene and tissue? FAQ .. find expression data for a tissue during development? FAQ .. find genes expressed in one tissue but not another? FAQ .. find references that report expression data for a gene at a specific age? FAQ More FAQs
	GXD Includes 31 Jan 2009 10,711 Genes studied in expression references 8,464 Genes with expression assay results 395,071 Expression assay results 63,807 Expression images 33,420 Expression assays 1,298 Mouse mutants with expression data More...

Gene Expression News 24 July 2008

In addition to links to detailed expression data entries, data summaries returned by the Gene Expression Data and Expanded query forms now also include links to expression literature content records matching the query parameters. Read more...

Some of the expression images annotated by GXD are 3-D spatially mapped into EMAGE, the Edinburgh Mouse Atlas and Gene Expression Database. GXD's image detail pages now include links to corresponding entries at EMAGE. This makes it easier to compare GXD's text-based and EMAGE's graphical annotation of the same expression data.

Now available on gene detail pages (see External Resources: in the Expression section) are links to gene expression profile pages at GEO, the microarray repository at NCBI; links to summary pages of images generated by GENSAT, the Gene Expression Nervous System Atlas Project; and links to the Allen Brain Atlas, a database of gene expression patterns in the adult mouse brain.

Gene Expression Data summaries are revised to make accessing the detailed expression data more intuitive. The links to the detailed data are now in the first column of the page and re-labeled data. A new camera icon indicates when images of the primary data are available by following the data link.

MGI-Mouse Gene Expression Database (GXD): Send Us Your Data - Gene Expression Database (GXD): Send Us Your Data

Electronic submission speeds up the integration of your data, making it more quickly available and increasing its exposure. It also allows you to include more of your data; GXD accepts both published and unpublished data.

Guidelines for submitting expression data
Gene Expression Notebook (GEN) – a tool to manage expression data in your laboratory and to submit selected data to GXD.

If you have any questions, please email us at gen@informatics.jax.org.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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