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HIV sequence database



PeptGen Peptide Generator

Purpose: Given an amino acid sequence, this tool generates and displays sets of overlapping peptides that can be used for peptide design and epitope mapping.

How to use: Paste amino acid sequence(s) in any valid format into the window below, or upload a file of sequences. Change the default values for the other parameters as needed and hit Submit. You can also use an HIV consensus sequence as input.

For additional details, see PeptGen Explanation.

Input
Paste your input here
[SAMPLE INPUT - single sequence]
[SAMPLE INPUT - alignment]
or upload your file
If you are submitting an alignment check this box

Options
Make peptides of length C-terminal forbidden amino acids
Overlap peptides by N-terminal forbidden amino acids
Shorten by Apply proline rule Yes No
Lengthen by Calculate hydropathy Yes No
    Color amino acids Yes No

Output
Produce simple output
Duplicate peptides flag remove
Gaps remove save
Output style classic new
last modified: Wed Jul 23 11:03 2008


Questions or comments? Contact us at seq-info@lanl.gov.