This interface can be used to find mutations associated with anti-HIV drug resistance in protease, reverse transcriptase, integrase, and envelope sequences. It accepts a nucleotide or amino acid sequence as input, translates it to amino acids if necessary, matches it to the right region using BLAST, and produces an alignment as well as a table of resistance-associated mutations, with links to additional information on those mutations in the HIV Resistance Database.
Paste in your FastA formatted sequence(s) or select a file containing the sequence or alignment. Select 'protein' or 'nucleotide' for whichever you have submitted, choose a referent sequence to compare your query against from our library, and run the program. For additional information, see
Note: the program may take several minutes to run.
