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MutL/MutS bacterial repair system
ICM simulation run on X-TORC cluster |
Multi-scale modeling of protein vibrations in HIV infection related protein
cyclophilin A. This work is being performed by Pratul K. Agarwal on Cheetah
supercomputer. |
Early Accomplishments of CBI (2003)
- Community Workshop for the Genomes to Life Facility on Characterizing and Imaging Molecular Machines - experimental and computing roadmap (3/03)
- Biology Workshop on Introduction to the Cray X1 (5/9/03)
- Organized GTL Workshops on Data and Tools, Modeling and Simulation, and Protein Structure Prediction (7/22-24/03)
- AMBER ported to Cray X1
Accomplishments in the the biological sciences enabled by CCS
prior to formation of CBI
- Assembling chromosomes 5,16,19 of the human genome
- Annotating all human microbials and over 50 microbials all together
- PROSPECT software recognized the most protein folds in Fourth
Community Wide Experiment on the Critical Assessment of Techniques for
Protein Structure Prediction
Enabling Technologies
- Our computational biology tools have been referenced in both Nature and Science genome issues
- The Genomic Integrated Supercomputing Toolkit (GIST) provides an interface to terascale systems
- We provide transparent access to these technologies to the biological community. Usage is predicted to double every six months.
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