Office of Science
FAQ
Capabilities

Molecular Science Computing

EMSL's flagship computing resources include:

Providing an integrated production computing environment, EMSL links to external facilities within the U.S. Department of Energy (DOE), collaborating universities, and industry. EMSL supports a wide range of computational activities in environmental molecular research, including benchmark calculations on small molecules, reliable calculations on large molecules and solids, simulations of large biomolecules, and reactive chemical transport modeling.

EMSL employs a forward-looking strategy to maintain leading-edge supercomputing capabilities and encourages users to combine computational and state-of-the-art experimental tools, providing a cross-disciplinary environment to further research. Learn about anticipated future challenges in biological and chemical sciences and environmental systems, the role that EMSL supercomputing resources and expert staff will play, and how EMSL's supercomputing upgrades will positively impact the environmental missions of DOE in the Greenbook.

Research

A variety of user projects are supported by EMSL's computing resources. These projects are categorized in three types based on their depth and focus. Brief descriptions of these project types and how to submit a proposal for each follows. In addition, detail is available about current, individual Computing Research Projects.

  1. Restrained Ion Population Transfer: A Novel Ion Transfer Method for Mass Spectrometry.
  2. One-Electron-Transfer Reactions of Polychlorinated Ethylenes: Concerted and Stepwise Cleavages.
  3. In Vitro Evolution of a Peptide with a Hematite Binding Motif That May Constitute a Natural Metal-Oxide Binding Archetype.
  4. Computer Simulation of Uranyl Uptake by the Rough Lipopolysaccharide Membrane of Pseudomonas aeruginosa.
  5. High-capacity hydrogen storage in lithium and sodium amidoboranes.
  1. Understanding Uranium Complex Formation Through Combined Modeling and Gas-Phase Experiments (Complex Uranium)
  2. The Synergy Between Molecular Theory and Solid-State NMR Spectroscopy (Model System for NMR)
  3. Energetics and Dynamics of Electron Transfer and Proton Transfer in Dissociation of MetalIII(salen)-Peptide Complexes in the Gas Phase (Getting a Charge)

Molecular Science Computing Capabilities Available at EMSL

Instrument Contact
Computing: Altix1 cluster Vorpagel, Erich
Computing: Chinook (HP 2310-Node Linux Cluster) Vorpagel, Erich
Computing: Data File Storage (NWfs) Cowley, David E
Wright, Ryan
Computing: SGI 16-processor Graphics Server (nwvisus) Vorpagel, Erich
Computing: Spokane cluster Bylaska, Eric
Rosso, Kevin M.

Inquiries

For general questions regarding EMSL computing resources, complete the Computing Scientific Consulting form; email mscf-consulting@emsl.pnl.gov; or call 509-371-6477, Monday – Friday, 8am - 5pm, PST

Computing Capability Steward (GVL): Erich Vorpagel | , 509-371-6448
Computing Capability Steward (MS3): Bert deJong | , 509-371-6445
Computing Capability Steward (High-Performance Computing Center): Kevin Regimbal | , 509-371-6075