Journal Article

In press

Brodeur, R. D., C. L. Suchman, D. C. Reese, T. W. Miller, E. A. Daly. In press. Spatial overlap and trophic interaction between pelagic fish and large jellyfish in the northern California Current. Marine Biology, 154:649-659.

Scheuerell, M. D., R. Hilborn. In press. Estimating the freshwater component of essential fish habitat for Pacific salmon (Oncorhynchus spp.) with the Shiraz model. American Fisheries Society Symposium.

Schmitt, L., S. Larsson, J. Burdukiewicz, J. Ziker, K. Svedhage, J. E. Zamon, H. Steffen. In press. Chronological insights, cultural change, and resources exploitation on the west coast of Sweden during the Late Palaeolithic/early Mesolithic transition. Oxford Journal of Archaeology.

2008

Angilletta Jr., M. J., E. A. Steel, K. K. Bartz, J. G. Kingsolver, M. D. Scheuerell, B. R. Beckman, L. G. Crozier. 2008. Big dams and salmon evolution: changes in thermal regimes and their potential evolutionary consequences. Evolutionary Applications, 1(2):286299.

Bersine, K., V. E. Brenneis, R. C. Draheim, A. M. Wargo Rub, J. E. Zamon, R. K. Litton, S. A. Hinton, M. D. Sytsma, J. R. Cordell, J. W. Chapman. 2008. Distribution of the invasive New Zealand mudsnail (Potamopyrgus antipodarum) in the Columbia River Estuary and its first recorded occurrence in the diet of juvenile Chinook salmon (Oncorhynchus tshawytscha). Biological Invasions.

Burke, B. J., K. Frick, R. E. Moses, M. McHenry. 2008. Prespawning Movements by Coho Salmon in the Lower Elwha River, Washington. Northwest Science, 82:119-127.

Crozier, L.G., R.W. Zabel, A.F. Hamlet. 2008. Predicting differential effects of climate change at the population level with life-cycle models of spring Chinook salmon. Global Change Biology 14: 236249.

Emmett, R. L., G. K. Krutzikowsky. 2008. Nocturnal Feeding of Pacific Hake (Merluccius productus) and Jack Mackerel (Trachurus symmetricus) off the Mouth of the Columbia River, 1998-2004. Transactions of the American Fisheries Society.

Good, T. P., J. R. Davies, B. J. Burke, M. H. Ruckelshaus. 2008. Incorporating catastrophic risk assessments into setting conservation goals for Pacific salmon. Ecological Applications 18(1): 246-257.

Jacobson, K.C., D. Teel, D.M. VanDoornik and E. Casillas. 2008. Parasite associated mortality of juvenile Pacific salmon caused by the trematode Nanophyetus salmincola during early marine residence. Marine Ecology Progress Series 354:235-244.

Miller, T. W., R. D. Brodeur, G. H. Rau. 2008. Carbon Stable Isotopes reveal Relative Contribution of Shelf-Slope Production to the Northern California Current Pelagic Community. Limnology and Oceanography, 53:1493-1503.

Moser, M. L., D. A. Ogden, B. P. Sandford. 2008. Effects of surgically-implanted transmitters on anguilliform fishes: lessons from lamprey. Journal of Fish Biology.

Moser, M. L., H. T. Pennington, J. M. Roos. 2008. Grating Size Needed to Protect Adult Pacific lamprey in the Columbia River Basin. North American Journal of Fisheries Management, 28:557-562.

Parnel, M. M., R. L. Emmett, R. D. Brodeur. 2008. Ichthyoplankton Community in the Columbia River Plume off Oregon: Effects of Fluctuating Oceanographic Conditions. Fishery Bulletin, 106:161-173.

Waples, R. S., R. W. Zabel, M. D. Scheuerell, and B. L. Sanderson. 2008. Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system. Molecular Ecology 17:84-96.

Williams, J. G. 2008. Mitigating the effects of high-head dams on the Columbia River, USA: Experience from the trenches. Hydrobiologia, 609:241-251.

Williams, J., R.W. Zabel, R.S. Waples. J.A. Hutchings, and W.P. Connor. 2008. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications 1:271-285.

Zabel, R. W., J. R. Faulkner, S. G. Smith, J. J. Anderson, C. V. Holmes, N. Beer, S. Iltis, J. Krinkle, G. Fredericks, B. Bellerud, J. Sweet, A. E. Giorgi. 2008. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia, 609:289-300.

Zabel, R. W., B. J. Burke, M. L. Moser, C. Peery. 2008. Relating dam passage of adult salmon to varying river conditions using time-to-event" analysis. American Fisheries Society Symposium, 61:153-163.

2007

Achord, S., R. W. Zabel, B. P. Sandford. 2007. Migration timing, growth, and estimated parr-to-smolt survival rates of wild Snake River spring-summer Chinook salmon from the Salmon River basin, Idaho, to the lower Snake River. Transactions of the American Fisheries Society, 136:142-154.

Auth, T. D., R. D. Brodeur, K. M. Fisher. 2007. Diel vertical distribution of an offshore ichthyoplankton community off the Oregon coast. Fishery Bulletin, 105(3):313-326.

Bi, H., R. E. Ruppel, W. T. Peterson. 2007. Modeling the salmon pelagic habitat off the Pacific Northwest coast using logistic regression. Marine Ecology Progress Series.

Brodeur, R. D., E. A. Daly, R. Schabetsberger, K. Mier. 2007. Interannual and interdecadal variability in juvenile coho salmon diets in relation to environmental changes in the Northern California Current. Fisheries Oceanography, 16:395-408.

Brodeur, R. D., E. A. Daly, M. V. Sturdevant, T. W. Miller, J. H. Moss, M. Thiess, M. Trudel, L. A. Weitkamp, J. L. Armstrong, E. C. Norton. 2007. Regional comparisons of juvenile salmon feeding in coastal marine waters off the West Coast of North America. American Fisheries Society Symposium, 57:183-203.

Emmett, R. L., and D. B. Sampson. 2007 The relationships between predatory fish, forage fishes, and juvenile salmonid marine survival off the Columbia River: A simple trophic model analysis. CalCOFI 48: 92-105.

Ferguson, J. W., B. P. Sandford, R. E. Reagan, L. Gilbreath, E. Meyer, R. Ledgerwood, N. S. Adams. 2007. Bypass system modification at Bonneville Dam on the Columbia River improved the survival of juvenile salmon. Transactions of the American Fisheries Society, 136:1487-1510.

Good, T. P., M. M. McClure, B. P. Sandford, K. Barnas, D. M. Marsh, B. Ryan, E. Casillas. 2007. Quantifying the effect of Caspian tern predation on endangered and threatened Pacific salmonids in the Columbia River. Endangered Species Research, 3:11-21.

Johnson, L. L., G. M. Ylitalo, M. R. Arkoosh, A. N. Kagley, C. L. Stafford, J. L. Bolton, J. Buzitis, B. F. Anulacion, T. K. Collier. 2007. Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries. Environmental Monitoring and Assessment, 124:167-194.

Miller, T. W., R. D. Brodeur. 2007. Diet of and tropic relationships among dominant marine nekton within the Northern California Current ecosystem. Fishery Bulletin, 105(4):548-559.

Moser, M. L., J. M. Butzerin, D. B. Dey. 2007. Capture and Collection of Lampreys: The State of the Science. Reviews in Fish Biology and Fisheries, 17(1):45-56.

Newell, J. A., K. L. Fresh, T. A. Quinn. 2007. Arrival patterns and movements of adult sockeye salmon (Oncorhynchus) in Lake Washington: Implications for management of an urban fishery. North American Journal of Fisheries Management, 27(3):908-917.

Tabor, R. A., K. L. Fresh, D. K. Paige, E. J. Warner, R. J. Peters. 2007. Distribution and habitat use of cottids in the Lake Washington basin. American Fisheries Society Symposium, 53:135-150.

Tabor, R. A., E. J. Warner, K. L. Fresh, B. A. Footen, J. R. Chan. 2007. Ontogenetic Diet Shifts of Prickly Sculpin in the Lake Washington Basin, Washington. Transactions of the American Fisheries Society, 136(6):1801-1813.

Tabor, R. A., B. A. Footen, K. L. Fresh, M. T. Celedonia, F. Mejial, D. L. Lowe, L. K. Park. 2007. Predation of juvenile Chinook salmon and other salmonids by smallmouth bass and largemouth bass in the Lake Washington Basin. North American Journal of Fisheries Management, 27(4):1174-1188.

Van Doornik, D. M., D. J. Teel, D. R. Kuligowski, C. A. Morgan, and E. Casillas. 2007. Genetic analyses provide insight into the early ocean stock distribution and survival of juvenile coho salmon off the coasts of Washington and Oregon. North American Journal of Fisheries Management 27:220-237.

Zamon, J. E., T. J. Guy, K. Balcomb, D. Ellifrit. 2007. Winter observations of southern resident killer whales (Orcinus orca) near the Columbia River plume during the 2005 spring Chinook salmon (Oncorhynchus tshawytscha) spawning migration. Northwestern Naturalist, 88:193-198.

2006

Arkoosh, M. R., A. N. Kagley, B. F. Anulacion, D. Boylen, B. P. Sandford, F. Loge, L. L. Johnson, T. K. Collier. 2006. Disease susceptibility of hatchery Snake River spring/summer Chinook salmon (Onchorynchus tshawytscha) with different juvenile migration histories in the Columbia River. Journal of Aquatic Animal Health, 18:223-231.

Auth, T. D., R. D. Brodeur. 2006. Distribution and Community Structure of Ichthyoplankton off the coast of Oregon, USA, in 2000 and 2002. Marine Ecology Progress Series, 319:199-213.

Bartz, K. K., K. M. Lagueux, M. D. Scheuerell, T. J. Beechie, A. D. Haas, M. H. Ruckelshaus. 2006. Translating restoration scenarios into habitat conditions: an initial step in evaluating recovery strategies for Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:1578-1595.

Buchanan, R. A., J. R. Skalski, S. G. Smith. 2006. Estimating the Effects of Smolt Transportation from Different Vantage Points and Management Perspectives. North American Journal of Fisheries Management, 26:460-472.

Burke, B. J., M. A. Jepson. 2006. Performance of passive integrated transponder tags and radio tags in determining dam passage behavior of adult Chinook salmon and steelhead. North American Journal of Fisheries Management, 26(3):742-752.

Craig, J. K., B. J. Burke, L. B. Crowder, J. A. Rice. 2006. Prey growth and size-dependent predation in juvenile estuarine fishes: experimental and model analyses. Ecology, 87(9):2366-2377.

Crozier, L. G., R. W. Zabel. 2006. Climate impacts at multiple scales: Evidence for differential population responses in juvenile Chinook salmon. Journal of Animal Ecology.

Emmett, R. L., G. K. Krutzikowsky, P. J. Bentley. 2006. Abundance and distribution of pelagic piscivorous fishes in the Columbia River plume during spring/early summer 1998-2003: Relationship to oceanographic conditions, forage fishes, and juvenile salmonids. Progress in Oceanography, 68:1-26.

Fresh, K. L., T. Wyllie-Echeverria, S. Wyllie-Echeverria, B. W. Williams. 2006. Using light permeable grating to mitigate impacts of residential floats on eelgrass Zostera marina L. in Puget Sound, Washington. Ecological Engineering, (28)354-362.

Kemp, P. S., M. H. Gessel, B. P. Sandford, J. G. Williams. 2006. The behaviour of Pacific salmonid smolts during passage over two experimental weirs under light and dark conditions. River research and applications, 22:429-440.

Koehler, M. E., K. L. Fresh, D. A. Beauchamp, J. R. Cordell, C. A. Simenstad, D. E. Seiler. 2006. Diet and bioenergetics of lake rearing juvenile Chinook salmon in Lake Washington. Transactions of the American Fisheries Society, (135)1580-1591.

Moser, M. L., S. Lindley. 2006. Use of Washington estuaries by subadult and adult green sturgeon. Environmental Biology of Fishes.

Reese, D. C., R. D. Brodeur. 2006. Identifying and characterizing biological hotspots in the northern California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 53:291-314.

Scheuerell, M. D., R. Hilborn, M. H. Ruckelshaus, K. K. Bartz, K. M. Lagueux, A. D. Haas, K. Rawson. 2006. The Shiraz model: a tool for incorporating fish-habitat relationships in conservation planning. Canadian Journal of Fisheries and Aquatic Sciences, 63:1596-1607.

Wainwright, T. C., L. R. Feinberg, R. C. Hoof, and W. T. Peterson. 2006. A comparison of two lower trophic models for the California Current System. Ecological Modelling 202(1-2):120-131. (http://dx.doi.org/10.1016/j.ecolmodel.2006.06.019)

ZABEL, RICHARD W., SCHEUERELL, MARK D., McCLURE, MICHELLE M. & WILLIAMS, JOHN G. (2006) The Interplay between Climate Variability and Density Dependence in the Population Viability of Chinook Salmon. Conservation Biology 20 (1), 190-200. doi: 10.1111/ j.1523-1739.2005.00300.x

2005

Anderson, J. J., E. Gurarie, R. W. Zabel. 2005. Mean free-path length theory of predator-prey interactions: Application to juvenile salmon migration. Ecological Modelling, 186:196-211.

Antolos, M., D. Roby, D. E. Lyons, K. Collis, A. F. Evans, M. Hawbecker, B. Ryan. 2005. Caspian tern predation on juvenile salmonids in the Mid-Columbia River. Transactions of the American Fisheries Society, 134:466-480.

Axel, G. A., E. F. Prentice, B. P. Sandford. 2005. PIT-tag detection system for large-diameter juvenile fish bypass pipes at Columbia River Basin hydroelectric dams. North American Journal of Fisheries Management, 25:646-651.

Bottom, D. L., K. K. Jones, T. J. Cornwell, A. Gray, C. A. Simenstad. 2005. Patterns of Chinook salmon migration and residency in the Salmon River estuary (Oregon). Estuarine, Coastal and Shelf Science, 64:79-93.

Brodeur, R. D., M. P. Seki, E. A. Pakhomov, A. V. Suntsov. 2005. Micronekton - What are they and why are they importan? PICES Press, 13:7-11.

Brodeur, R. D., J. P. Fisher, R. L. Emmett, C. A. Morgan, E. Casillas. 2005. Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions. Marine Ecology Progress Series.

Busby, M. S., K. Mier, R. D. Brodeur. 2005. Habitat associations of demersal fishes and crabs in the Pribilof Islands region of the Bering Sea. Fisheries Research, 75:15-28.

De Robertis, A., C. A. Morgan, R. Schabetsberger, R. W. Zabel, R. D. Brodeur, R. L. Emmett, C. M. Knight, G. K. Krutzikowsky, E. Casillas. 2005. Columbia River plume fronts. II Distribution, abundance and feeding ecology of juvenile salmon. Marine Ecology Progress Series, 299:33-44.

Emmett, R. L., R. D. Brodeur, T. W. Miller, S. S. Pool, P. J. Bentley, G. K. Krutzikowsky, J. McCrae. 2005. Pacific Sardine (Sardinops sagax) Abundance, Distribution and Ecological Relationships in the Pacific Northwest. California Cooperative Oceanic Fisheries Investigations Reports, 46:122-143.

Ferguson, J. W., R. F. Absolon, T. Carlson, B. P. Sandford. 2005. Evidence of delayed mortality in juvenile Pacific salmon passing through turbines at Columbia River dams. Transactions of the American Fisheries Society, 135:139-150.

Frick, K. 2005. Nematocyst complements of nudibranchs in the genus Flabellina in the Gulf of Maine and the effect of diet manipulations on the cnidom of Flabellina verrucosa. Marine Biology, 147(6):1313-1321.

Gomez-Gutierrez, J., W. T. Peterson, C. B. Miller. 2005. Cross-shelf life-stage segregation and community structure of the euphausiids off central Oregon (1970-1972). Deep Sea Research Part II: Topical Studies in Oceanography, 52:289-315.

Harvey, C. J., P. Kareiva. 2005. Community context and the influence of non-indigenous species on juvenile salmon survival in a Columbia River reservoir. Biological Invasions, 7:651-663.

Hirst, A. G., W. T. Peterson, P. Rothery. 2005. Errors in juvenile copepod growth rate estimates are widespread: problems with the Moult Rate method. Marine Ecology Progress Series, 296:263-279.

Keefer, M. L., C. Peery, W. R. Daigle, M. A. Jepson, S. R. Lee, C. T. Boggs, K. R. Tolotti, B. J. Burke. 2005. Escapement, harvest, and unknown loss of radio-tagged adult salmonids in the Columbia River - Snake River hydrosystem. Canadian Journal of Fisheries and Aquatic Sciences, 62:930-949.

Keister, J. E., J. B. Johnson, C. A. Morgan, W. T. Peterson. 2005. Biological indicators of the timing and direction of warm-water advection during the 1997/1998 El Niqo off the central Oregon coast, USA. Marine Ecology Progress Series, 295:43-48.

Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Fine-scale behavioral responses of Pacific salmonid smolts as they encounter divergence and acceleration of flow. Transactions of the American Fisheries Society, 134:390-398.

Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Seaward migrating subyearling chinook salmon avoid overhead cover. Journal of Fish Biology, 67:1381-1391.

Krutzikowsky, G. K., R. L. Emmett. 2005. Diel differences in surface trawl fish catches off Oregon and Washington. Fisheries Research, 71:365-371.

Lamb, J., W. T. Peterson. 2005. Ecological zonation of zooplankton in the COAST study region off central Oregon in June and August 2001 with consideration of retention mechanisms. Journal of Geophysical Research, 110(C10 ):C10S16.

Meador, J. P., D. W. Ernest, A. N. Kagley. 2005. A comparison of the non-essential elements cadmium, mercury, and lead found in fish and sediment from Alaska and California. Science of the Total Environment, 339:189-205.

Morgan, C. A., A. De Robertis, R. W. Zabel. 2005. Columbia River plume fronts. I. Hydrography, zooplankton distribution, and community composition. Marine Ecology Progress Series, (299)19-31.

Reese, D. C., T. W. Miller, R. D. Brodeur. 2005. Community structure of near-surface zooplankton in the northern California Current in relation to oceanographic conditions. Deep Sea Research Part II: Topical Studies in Oceanography, 52:29-50.

Ressler, P. H., R. D. Brodeur, W. T. Peterson, S. K. Pierce, P. M. Vance, A. R. Rostad, J. A. Barth. 2005. The spatial distribution of euphausiid aggregations in the northern California Current during August 2000. Deep Sea Research Part II: Topical Studies in Oceanography, 52(1-2):89-108.

Romare, P., D. E. Schindler, M. D. Scheuerell, J. M. Scheuerell, A. H. Litt, J. H. Shepherd. 2005. Variation in spatial and temporal gradients in zooplankton spring development: the effect of climatic factors. Freshwater Biology, 50:1007-1021.

Scheuerell, J. M., D. E. Schindler, M. D. Scheuerell, K. L. Fresh, A. H. Litt, J. A. Shepherd, C. H. Sibley. 2005. Temporal dynamics in foraging behavior of a pelagic predator. Canadian Journal of Fisheries and Aquatic Sciences, 62(11):2494-2501.

Scheuerell, M. D., P. S. Levin, R. W. Zabel, J. G. Williams, B. L. Sanderson. 2005. A new perspective on the importance of marine-derived nutrients to threatened stocks of Pacific salmon (Oncorhynchus sp.). Canadian Journal of Fisheries and Aquatic Sciences, 62(5):961-964.

Scheuerell, M. D., J. G. Williams. 2005. Forecasting climate-induced changes in the survival of Snake River spring/summer Chinook salmon. Fisheries Oceanography, 14(6):448-457.

Scheuerell, M. D. 2005. Mapping the status of Pacific salmon. Trends in Ecology and Evolution, 20:290-291.

Scheuerell, M. D. 2005. The influence of juvenile size on the age at maturity of individually marked wild Chinook salmon. Transactions of the American Fisheries Society, 134(4):999-1004.

Schindler, D. E., D. E. Rogers, M. D. Scheuerell, C. A. Abrey. 2005. Effects of changing climate on zooplankton and juvenile sockeye salmon growth in southwestern Alaska. Ecology, 86:198-209.

Suchman, C. L., R. D. Brodeur. 2005. Abundance and distribution of large medusae in surface waters of the northern California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 52:51-72.

Sutor, M. M., T. J. Cowles, W. T. Peterson, S. D. Pierce. 2005. Acoustic observations of finescale zooplankton distributions in the Oregon upwelling region. Deep Sea Research Part II: Topical Studies in Oceanography, 52:109-121.

Sutor, M. M., T. J. Cowles, W. T. Peterson, J. Lamb. 2005. Comparison of acoustic and net sampling systems to determine patterns in zooplankton distribution. Journal of Geophysical Research, 110(C10):C10S16.

Swartzman, G. L., A. G. Winter, K. O. Coyle, R. D. Brodeur, T. Buckley, L. Ciannelli, G. L. Hunt Jr., J. N. Ianelli, A. Macklin. 2005. Relationship of age-0 pollock abundance and distribution around the Pribilof Islands, to other shelf regions of the eastern Bering Sea. Fisheries Research, 74:273-287.

Tear, T. H., P. Kareiva, P. L. Angermeier, P. Comer, B. Czech, R. Kautz, L. Landon, D. Mehlman, K. Murphy, M. H. Ruckelshaus, J. M. Scott, G. Wilhere. 2005. How much is enough? The recurrent problem of setting measurable objectives in conservation. Bioscience, 55:835-849.

Zabel, R. W., T. Wagner, J. L. Congleton, S. G. Smith, J. G. Williams. 2005. Survival and selection of migrating salmon from capture-recapture models with individual traits. Ecological Applications, 15:1427-1439.

Zamon, J. E., D. W. Welch. 2005. Rapid shift in zooplankton community composition on the northeast Pacific shelf during the 1998-1999 El Nino-La Nina event. Canadian Journal of Fisheries and Aquatic Sciences, 62:133-144.

2004

Arkoosh, M. R., E. R. Clemons, A. N. Kagley, C. L. Stafford, A. Glass, K. C. Jacobson, P. Reno, M. S. Myers, E. Casillas, L. L. Johnson, F. Lodge, T. K. Collier. 2004. Survey of pathogens in juvenile salmon onchorhynchus spp. migrating through Pacific Northwest estuaries. Journal of Aquatic Animal Health, 16:186-196.

Beauchamp, D. A., C. J. Sergeant, M. M. Mazure, J. M. Scheuerell, D. E. Schindler, M. D. Scheuerell, K. L. Fresh, D. E. Seiler, T. P. Quinn. 2004. Spatial-temporal dynamics of early feeding demand and food supply by sockeye salmon fry in Lake Washington. Transactions of the American Fisheries Society, 133:1014-1032.

Bosley, K. L., J. W. Lavelle, R. D. Brodeur, W. W. Wakefield, R. L. Emmett, E. T. Baker, K. M. Rehmke. 2004. Biological and Physical Processes in and around Astoria Submarine Canyon, Oregon, U.S.A. Journal of Marine Systems, 50:21-37.

Brodeur, R. D., J. P. Fisher, D. J. Teel, R. L. Emmett, E. Casillas, T. W. Miller. 2004. Juvenile salmonid distribution, growth, condition, origin, environmental and species associations in the Northern California Current. Fishery Bulletin, 102:25-46.

Ciannelli, L., B. W. Robson, R. C. Francis, K. Y. Aydin, R. D. Brodeur. 2004. Boundaries of open marine ecosystems: an application to the Pribilof Archipelego, southeast Bering Sea. Ecological Applications, 14:942-953.

Ciannelli, L., R. D. Brodeur, J. M. Napp. 2004. Foraging impact on zooplankton by age-0 walleye pollock (Theragra chalcogramma) around a front in the southeast Bering Sea. Marine Biology, 144:515-526.

Connor, W. P., S. G. Smith, T. Andersen, S. Bradbury, D. C. Burum, E. E. Hockersmith, M. L. Schuck, G. W. Mendel, R. M. Bugert. 2004. Postrelease performance of hatchery yearling and subyearling fall Chinook salmon released into the Snake River. North American Journal of Fisheries Management, 24:545-560.

DeVries, P., F. W. Goetz, K. L. Fresh, D. E. Seiler. 2004. Evidence of a lunar gravitation cue on timing of estuarine entry by Pacific salmon smolts. Transactions of the American Fisheries Society, 133:1379-1395.

Dower, J. F., R. D. Brodeur. 2004. The role of biophysical coupling in concentrating marine organisms around shallow topographies. Journal of Marine Systems, 50:1-2.

Emmett, R. L., R. D. Brodeur, P. M. Orton. 2004. The vertical distribution of juvenile salmon (Oncorhynchus spp.) and associated fishes in the Columbia River plume. Fisheries Oceanography, 13:392-402.

Goericke, R., E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, A. Huyer, R. L. Smith, P. A. Wheeler, R. Hooff, W. T. Peterson, G. Gaxiola-Castro, J. Gomez-Valdes, B. E. Lavaniegos, K. D. Hyrenbach, W. J. Sydeman. 2004. The state of the California Current, 2003-2004: A rare "normal" year. California Cooperative Oceanic Fisheries Investigations Reports, 45:27-59.

Halpin, P. M., P. T. Strub, W. T. Peterson, T. R. Baumgartner. 2004. An overview of interactions among oceanography, marine ecosystems, climatic and human disruptions along the eastern margins of the Pacific Ocean. Revista Chilena de Historia Natural, 77:371-409.

Ledgerwood, R. D., B. Ryan, E. M. Dawley, E. P. Nunnallee, J. W. Ferguson. 2004. A surface trawl to detect migrating juvenile Salmonids tagged with passive integrated transponder tags. North American Journal of Fisheries Management, 24:440-451.

Mackas, D. L., W. T. Peterson, J. E. Zamon. 2004. Comparisons of interannual biomass anomalies of zooplankton communities along the continental margins of British Columbia and Oregon. Deep Sea Research Part II: Topical Studies in Oceanography, 51:875-896.

Meador, J. P., D. W. Ernest, A. N. Kagley. 2004. Bioaccumulation of arsenic in marine fish and invertebrates from Alaska and California. Archives of Environmental Contamination and Toxicology, 47:223-233.

Moore, J. W., D. E. Schindler, M. D. Scheuerell. 2004. Disturbance of freshwater habitats by anadromous salmon in Alaska. Oecologia, 139:298-308.

Neill, W. H., J. R. Tomasso, T. S. Brandes, S. R. Craig, L. V. DiMichele, L. P. Fontaine, D. M. Gatlin, C. Hutchins, C. J. Stahl, B. J. Burke, K. Duchon, J. M. Miller, R. E. Edwards, B. J. Ponwith, R. R. Vega. 2004. Ecophys.Fish: A Simulation Model of Fish Growth in Time-Varying Environmental Regimes. Reviews in Fisheries Science, 12:233-288.

Nowak, G. M., R. A. Tabor, E. J. Warner, K. L. Fresh, T. P. Quinn. 2004. Ontogenetic shifts in habitat and diet of cutthroat trout in Lake Washington, Washington. North American Journal of Fisheries Management, 24:624-635.

Sabo, J. L., E. E. Holmes, P. Kareiva. 2004. The efficacy of simple viability models in ecological risk assessment: Does density dependence matter? Ecology, 85:328-341.

Scheuerell, M. D. 2004. Quantifying aggregation and association in three dimensional landscapes. Ecology, 85(8):2332-2340.

Valdes, L., R. Harris, T. Ikeda, S. McKinnell, W. T. Peterson. 2004. The role of zooplankton in global ecosystem dynamics: Comparative studies from the world oceans - Introduction. ICES Journal of Marine Science, 61:441-444.

Wagner, T., J. L. Congleton, D. M. Marsh. 2004. Smolt-to-adult return rates of juvenile chinook salmon transported through the Snake-Columbia River hydropower system, USA, in relation to densities of co-transported juvenile steelhead. Fisheries Research, 68:259-270.

Zabel, R. W., S. Achord. 2004. Relating size of juveniles to survival within and among populations of chinook salmon. Ecology, 85:795-806.

2003

Absolon, R. F., D. A. Brege. 2003. Canister for releasing marked fish at depth in hydroelectric dam gatewells and forebays. North American Journal of Fisheries Management, 23:605-610.

Achord, S., P. S. Levin, R. W. Zabel. 2003. Density-dependent mortality in Pacific salmon: the ghost of impacts past? Ecology Letters, 6:335-342.

Brodeur, R. D., W. G. Pearcy, S. Ralston. 2003. Abundance and distribution patterns of nekton and micronekton in the Northern California Current Transition Zone. Journal of Oceanography, 59:515-535.

Brodeur, R. D., J. P. Fisher, Y. Ueno, K. Nagasawa, W. G. Pearcy. 2003. An east-west comparison of the Transition Zone coastal pelagic nekton of the North Pacific Ocean. Journal of Oceanography, 59:415-434.

Brodeur, R. D., K. W. Myers, J. H. Helle. 2003. Research conducted by the United States on the early ocean life history of Pacific salmon. North Pacific Anadromous Fish Commission Bulletin, 3:89-131.

De Robertis, A. C., C. H. Ryer, A. Veloza, R. D. Brodeur. 2003. Differential effects of turbidity on prey consumption of piscivorous and planktivorous fish. Canadian Journal of Fisheries and Aquatic Sciences, 60:1517-1526.

Feinberg, L., W. T. Peterson. 2003. Variability in duration and intensity of euphausiid spawning off central Oregon, 1996-2001. Progress in Oceanography, 57:363-379.

Fresh, K. L., S. L. Schroder. 2003. Predation by northern pikeminnow on hatchery and wild coho salmon smolts in the Chehalis River, Washington. North American Journal of Fisheries Management, 23:1257-1264.

Frick, K. 2003. Response in nematocyst uptake by the nudibranch Flabellina verrucosa to the presence of various predators in the southern Gulf of Maine. Biological Bulletin, 205:367-376.

Gomez-Gutierrez, J., W. T. Peterson, A. C. De Robertis, R. D. Brodeur. 2003. Mass mortality of krill caused by parasitoid ciliates. Science, 301(5631):339.

Harmon, J. R. 2003. A Trap for Handling Adult Anadromous Salmonids at Lower Granite Dam on the Snake River, Washington. North American Journal of Fisheries Management, 23:989-992.

Hockersmith, E. E., W. D. Muir, S. G. Smith, B. P. Sandford, R. W. Perry, N. S. Adams, D. W. Rondorf. 2003. Comparison of migration rate and survival between radio-tagged and PIT-tagged migrant yearling chinook salmon in the snake and Columbia rivers. North American Journal of Fisheries Management, 23:404-413.

Jacobson, K. C., M. R. Arkoosh, A. N. Kagley, E. R. Clemons, T. K. Collier, E. Casillas. 2003. Cumulative effects of natural and anthropogenic stress on immune function and disease resistance in juvenile chinook salmon. Journal of Aquatic Animal Health, 15:1-12.

Kagley, A. N., R. G. Snider, P. K. Krishnakumar, E. Casillas. 2003. Assessment of seasonal variability of cytochemical responses to contaminant exposure in the blue mussel Mytilus edulis (complex). Archives of Environmental Contamination and Toxicology, 44:43-52.

Keister, J. E., W. T. Peterson. 2003. Zonal and seasonal variations in zooplankton community structure off the central Oregon coast, 1998-2000. Progress in Oceanography, 57:341-361.

Matter, A. L., B. P. Sandford. 2003. A Comparison of Migration Rates of Radio- and PIT-Tagged Adult Snake River Chinook Salmon through the Columbia River Hydropower System. North American Journal of Fisheries Management, 23:967-973.

Morgan, C. A., W. T. Peterson, R. L. Emmett. 2003. Onshore-offshore variations in copepod community structure off the Oregon coast during the summer upwelling season. Marine Ecology Progress Series, 249:223-236.

Moser, M. L., D. A. Close. 2003. Assessing Pacific lamprey status in the Columbia River Basin. Northwest Science, 77:116-125.

Peterson, W. T., F. B. Schwing. 2003. A new climate regime in northeast pacific ecosystems. Geophysical Research Letters, 30:art. no.-1896.

Peterson, W. T., J. E. Keister. 2003. Interannual variability in copepod community composition at a coastal station in the northern California Current: a multivariate approach. Deep Sea Research Part II: Topical Studies in Oceanography, 50:2499-2517.

Roegner, G. C., D. A. Armstrong, B. M. Hickey, A. Shanks. 2003. Ocean Distribution of Dungeness Crab Megalopae and Recruitment Patterns to Estuaries in Southern Washington State. Estuaries, 26:1058-1070.

Ruesink, J. L., G. C. Roegner, B. R. Dumbauld, J. A. Newton, D. A. Armstrong. 2003. Contributions of Coastal and Watershed Energy Sources to Secondary Production in a Northeastern Pacific Estuary. Estuaries, 26:1079-1093.

Ryan, B., S. G. Smith, J. M. Butzerin, J. W. Ferguson. 2003. Relative vulnerability to avian predation of juvenile salmonids tagged with passive integrated transponders in the Columbia River estuary, 1998-2000. Transactions of the American Fisheries Society, 132:275-288.

Ryan, B., S. G. Smith, J. M. Butzerin, J. W. Ferguson. 2003. Vulnerability of PIT-tagged juvenile. Transactions of the American Fisheries Society, 132:275-288.

Schabetsberger, R., C. A. Morgan, R. D. Brodeur, C. L. Potts, W. T. Peterson, R. L. Emmett. 2003. Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume. Fisheries Oceanography, 12:523-540.

Schabetsberger, R., M. Sztatecsny, G. Drozdowski, R. D. Brodeur, G. L. Swartzman, M. T. Wilson, A. G. Winter, J. M. Napp. 2003. Size-dependent, spatial, and temporal variability of juvenile walleye pollock (Theragra chalcogramma) feeding at a structural front in the southeast Bering Sea. Marine Ecology, 24:141-164.

Smith, S. G., W. D. Muir, E. E. Hockersmith, R. W. Zabel, R. J. Graves, C. V. Ross, W. P. Connor, B. D. Arnsberg. 2003. Influence of River Conditions on Survival and Travel Time of Snake River Subyearling Fall Chinook Salmon. North American Journal of Fisheries Management, 23:939-961.

Zabel, R. W., C. J. Harvey, S. L. Katz, T. P. Good, P. S. Levin. 2003. Ecologically Sustainable Yield. American Scientist, 91:150-157.

2002

Batchelder, H. P., J. A. Barth, M. P. Kosro, P. T. Strub, R. D. Brodeur, W. T. Peterson, C. T. Tynan, M. D. Ohman, L. W. Botsford, T. M. Powell, F. B. Schwing, D. G. Ainley, D. L. Mackas, B. M. Hickey, S. R. Ramp. 2002. The GLOBEC Northeast Pacific California Current System program. Oceanography, 15(2):36-47.

Brodeur, R. D., H. Sugisaki, G. L. Hunt Jr. 2002. Increases in jellyfish biomass in the Bering Sea: Implications for the ecosystem. Marine Ecology Progress Series, 233:89-103.

Brodeur, R. D., M. T. Wilson, L. Ciannelli, M. J. Doyle, J. M. Napp. 2002. Interannual and regional variability in distribution and ecology of juvenile Pollock and their prey in frontal structures of the Bering Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 49:6051-6067.

Ciannelli, L., R. D. Brodeur, G. L. Swartzman, S. Salo. 2002. Physical and biological factors influencing the spatial distribution of age-0 walleye Pollock (Theragra chalcogramma) around the Pribilof Islands, Bering Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 49:6109-6126.

Ciannelli, L., A. J. Paul, R. D. Brodeur. 2002. Regional, interannual and size-related variation of age 0 year walleye pollock whole body energy content around the Pribilof Islands, Bering Sea. Journal of Fish Biology, 60:1170-1182.

Clarke, J. A., J. M. Hoekstra, P. D. Boersma, P. Kareiva. 2002. Improving U.S. Endangered Species Act recovery plans: Key findings and recommendations of the SCB recovery plan project. Conservation Biology, 16:1510-1519.

Doyle, M. J., K. Mier, M. S. Busby, R. D. Brodeur. 2002. Regional variations in springtime ichthyoplankton assemblages in the Northeast Pacific Ocean. Progress in Oceanography, 53:247-281.

Emmett, R. L., S. A. Hinton, D. J. Logan, G. T. McCabe Jr. 2002. Introduction of a Siberian Freshwater Shrimp to Western North America. Biological Invasions, 4:447-450.

Gerber, L. R., P. Kareiva, J. Bascompte. 2002. The influence of life history attributes and fishing pressure on the efficacy of marine reserves. Biological Conservation, 106:11-18.

Gray, A., C. A. Simenstad, D. L. Bottom, T. J. Cornwell. 2002. Contrasting functional performance of juvenile salmon habitat in recovering wetlands of the Salmon River estuary, Oregon, USA. Restoration Ecology, 10:514-526.

Hunt, G. L. Jr., P. J. Stabeno, G. Walters, E. Sinclair, R. D. Brodeur, J. M. Napp, N. A. Bond. 2002. Climate change and control of the southeastern Bering Sea pelagic ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography, 49:5821-5853.

Irigoien, X., R. P. Harris, H. M. Verheye, P. Joly, J. Runge, M. Starr, D. Pond, R. Campbell, R. Shreeve, P. Ward, A. N. Smith, H. G. Dam, W. T. Peterson, V. Tirell, M. Koski, T. Smith, D. Harbour, R. Davidson. 2002. Copepod hatching success rate in marine ecosystems with high diatom concentrations: the paradox of diatom-copepod interactions revisited. Nature, 419:387-389.

Levin, P. S., J. G. Williams. 2002. Interspecific effects of artificially propagated fish: an additional conservation risk for salmon. Conservation Biology, 16:1581-1587.

Levin, P. S., S. Achord, B. E. Feist, R. W. Zabel. 2002. Non-indigenous brook trout and the demise of threatened Snake River salmon: a forgotten threat? Proceedings of the Royal Society of London. Series B, 269:1663-1670.

Moser, M. L., P. A. Ocker, L. C. Stuehrenberg, T. C. Bjornn. 2002. Passage efficiency of adult Pacific lampreys at hydropower dams on the lower Columbia River, USA. Transactions of the American Fisheries Society, 131:956-965.

Moser, M. L., A. L. Matter, L. C. Stuehrenberg, T. C. Bjornn. 2002. Use of an extensive radio receiver network to document Pacific lamprey (Lampetra tridentata) entrance efficiency at fishways in the Lower Columbia River, USA. Hydrobiologia, 483:45-53.

Napp, J. M., C. T. Baier, R. D. Brodeur, K. O. Coyle, N. Shiga, K. Mier. 2002. Interannual and decadal variability in zooplankton communities of the southeast Bering Sea shelf. Deep Sea Research Part II: Topical Studies in Oceanography, 49:5991-6008.

Peterson, W. T., J. Gomez-Gutierrez, C. A. Morgan. 2002. Cross-shelf variation in calanoid copepod production during summer 1996 along the Oregon coast, USA. Marine Biology, 141:353-365.

Peterson, W. T., J. E. Keister. 2002. The effect of a large cape on distribution patterns of coastal and oceanic copepods off Oregon and northern California during the 1998-1999 El Nino-La Nina. Progress in Oceanography, 53:389-411.

Peterson, W. T., J. E. Keister, L. Feinberg. 2002. The effects of the 1997-98 el Nino event on hydrography and zooplankton off the central Oregon coast. Progress in Oceanography, 54:381-398.

Roegner, G. C., B. M. Hickey, J. A. Newton, A. Shanks, D. A. Armstrong. 2002. Wind-induced plume and bloom intrusions into Willapa Bay, Washington. Limnology and Oceanography, 47:1033-1042.

Ruckelshaus, M. H., P. S. Levin, J. B. Johnson, P. Kareiva. 2002. The Pacific salmon wars: what science brings to the challenge of recovering species. Annual Review of Ecology and Systematics, 33:665-706.

Sandford, B. P., S. G. Smith. 2002. Estimation of smolt-to-adult return percentages for Snake River Basin anadromous salmonids, 1990-1997. Journal of Agricultural, Biological, and Environmental Statistics, 7:243-263.

Smith, S. G., W. D. Muir, J. G. Williams, J. R. Skalski. 2002. Factors associated with travel time and survival of migrant yearling chinook salmon and steelhead in the lower Snake River. North American Journal of Fisheries Management, 22:385-405.

Swartzman, G. L., J. M. Napp, R. D. Brodeur, A. G. Winter, L. Ciannelli. 2002. Spatial patterns of pollock and zooplankton distribution in the Pribilof Islands, Alaska nursery area and their relationship to pollock recruitment. ICES Journal of Marine Science, 59:1167-1186.

Weingartner, T. J., K. O. Coyle, B. Finney, R. Hopcroft, T. Whitledge, R. D. Brodeur, M. Dagg, E. Farley, D. Haidvogel, L. Haldorson, A. Herman, S. Hinckley, J. M. Napp, P. J. Stabeno, T. Kline, C. Lee, E. Lessard, T. Royer, S. Strom. 2002. The Northeast Pacific GLOBEC Program: Coastal Gulf of Alaska. Oceanography, 15:48-63.

Zabel, R. W., J. G. Williams. 2002. Selective mortality in chinook salmon: what is the role of human disturbance? Ecological Applications, 12:173-183.

Zabel, R. W., P. S. Levin. 2002. Simple assumptions on age composition lead to erroneous conclusions on the nature of density dependence in age-structured populations. Oecologia, 133:349-355.

Zabel, R. W. 2002. Using "travel time" data to characterize the behavior of migrating animals. American Naturalist, 159:372-387.

2001

Arkoosh, M. R., E. Casillas, E. R. Clemons, P. A. Huffman, A. N. Kagley, T. K. Collier, J. E. Stein. 2001. Increased susceptibility of juvenile chinook salmon (Oncorhynchus tshawytscha) to vibriosis after exposure to chlorinated and aromatic compounds found in contaminated urban estuaries. Journal of Aquatic Animal Health, 13:257-268.

Boersma, P. D., P. Kareiva, W. Fagan, J. Clark, J. M. Hoekstra. 2001. How Good Are Endangered Species Recovery Plans? Bioscience, 51:643-649.

Brodeur, R. D. 2001. Habitat-specific distribution of Pacific Ocean perch (Sebastes alutus) in Pribilof Canyon, Alaska. Continental Shelf Research, 21:207-224.

Collis, K., D. Roby, B. Ryan, R. D. Ledgerwood. 2001. Colonial Waterbird Predation on Juvenile Salmonids Tagged with Passive Integrated Transponders in the Columbia River Estuary: Vulnerability of Different Salmonid Species, Stocks, and Rearing Types. Transactions of the American Fisheries Society, 130:385-396.

Downing, S. L., E. F. Prentice, R. W. Frazier, J. E. Simonson, E. P. Nunnallee. 2001. Technology developed for diverting passive integrated transponder (PIT) tagged fish at hydroelectric dams in the Columbia River Basin. Aquacultural Engineering, 25:149-164.

Fagan, W., E. Meir, J. Prendergast, A. Folarin, P. Kareiva. 2001. Characterizing population vulnerability for 758 species. Ecology Letters, 4:132-138.

Kareiva, P., M. Marvier, M. M. McClure. 2001. Dam breaching and chinook salmon recovery: Response. Science, 291:939a.

Levin, P. S., M. H. Schiewe. 2001. Preserving salmon biodiversity. American Scientist, 89:220-227.

Levin, P. S., R. W. Zabel, J. G. Williams. 2001. The road to extinction is paved with good intentions: negative effects of fish hatcheries on threatened salmon. Proceedings of the Royal Society of London. Series B, 268:1153-1158.

Muir, W. D., S. G. Smith, J. G. Williams, E. E. Hockersmith, J. R. Skalski. 2001. Survival estimates for PIT-tagged migrant yearling chinook salmon and steelhead in the Lower Snake and Lower Columbia Rivers, 1993-1998. North American Journal of Fisheries Management, 21:269-282.

Muir, W. D., S. G. Smith, J. G. Williams, E. E. Hockersmith, J. R. Skalski. 2001. Survival estimates for migrant yearling chinook salmon and steelhead tagged with passive integrated transponders in the lower Snake and lower Columbia Rivers, 1993-1998. North American Journal of Fisheries Management, 21:269-282.

Muir, W. D., S. G. Smith, J. G. Williams, B. P. Sandford. 2001. Survival of PIT-tagged juvenile salmonids passing through bypass systems, turbines, and spillways with and without flow deflectors at Snake River dams. North American Journal of Fisheries Management, 21(1):135-146.

Peterson, W. T. 2001. Patterns in stage duration and development among marine and freshwater calanoid and cyclopoid copepods: a review of rules, physiological constraints, and evolutionary significance. Hydrobiologia, 453(1-3):91-105.

Roegner, G. C., A. Shanks. 2001. Import of coastally-derived chlorophyll a to South Slough, Oregon. Estuaries, 24(2):244-256.

Ryan, B., J. W. Ferguson, R. D. Ledgerwood, E. P. Nunnallee. 2001. Detection of passive integrated transponder tags from juvenile salmonids on piscivorous bird colonies in the Columbia River Basin. North American Journal of Fisheries Management, 21:417-421.

Sorte, C. J., W. T. Peterson, C. A. Morgan, R. L. Emmett. 2001. Larval dynamics of the sand crab, Emerita analoga, off the central Oregon coast during a strong El Nino period. Journal of Plankton Research, 23:939-944.

Stockwell, D. A., T. Whitledge, S. I. Zeeman, K. O. Coyle, J. M. Napp, R. D. Brodeur, A. I. Pinchuk, G. L. Hunt Jr. 2001. Anomalous conditions in the south-eastern Bering Sea, 1997: Nutrients, phytoplankton, and zooplankton. Fisheries Oceanography, 10:99-116.

Sugisaki, H., K. M. Bailey, R. D. Brodeur. 2001. Development of predator evasion response behavior by larval walleye pollock, Theragra chalcogramma. Marine Biology, 139:19-24.

Sugisaki, H., K. M. Bailey, R. D. Brodeur. 2001. Development of the escape response in larval walleye pollock (Theragra chalcogramma). Marine Biology, 139:19-24.

Tynan, C. T., D. P. DeMaster, W. T. Peterson. 2001. Endangered Right Whales on the Southeastern Bering Sea Shelf. Science, 294(5548):1894.

Williams, J. G. 2001. Potential impacts of Renibacterium salmoninarum on adult returns of Snake River spring-summer chinook salmon. Bulletin of National Research Institute of Aquaculture, Supplement, 5:55-59.

Williams, J. G., S. G. Smith, W. D. Muir. 2001. Survival estimates for downstream migrant yearling juvenile salmonids through the Snake and Columbia River Hydropower System, 1966-1980 and 1993-1999. North American Journal of Fisheries Management, 21:310-317.

2000

Brodeur, R. D., G. W. Boehlert, E. Casillas, M. B. Eldridge, J. H. Helle, W. T. Peterson, W. R. Heard, S. Lindley, M. H. Schiewe. 2000. A coordinated research plan for estuarine and ocean research on Pacific salmon. Fisheries, 25(6):7-16.

Emmett, R. L., R. Llanso, J. A. Newton, R. Thom, M. Hornberger, C. A. Morgan, C. Levings, A. Copping, P. Fishman. 2000. Geographic signatures of North American west coast estuaries. Estuaries, 23(6):765-792.

Emmett, R. L., R. D. Brodeur. 2000. Recent changes in the pelagic nekton community off Oregon and Washington in relation to some physical oceanographic conditions. North Pacific Anadromous Fish Commission Bulletin, 2:11-20.

Kareiva, P., P. S. Levin, M. M. McClure. 2000. Letter: Many plans, one bottom line: save endangered salmon. Science, 289:2281-2282.

Kareiva, P., M. Marvier, M. M. McClure. 2000. Recovery and management options for spring/summer chinook salmon in the Columbia River Basin. Science, 290:977-979.

Muir, W. D., G. T. McCabe Jr., M. J. Parsley, S. A. Hinton. 2000. Diet of first-feeding larval and young-of-the-year white sturgeon in the lower Columbia River. Northwest Science, 74(1):25-33.

Rice, C. A., M. S. Myers, M. L. Willis, B. L. French, E. Casillas. 2000. From sediment bioassay to fish biomarker - connecting the dots using simple trophic relationships. Marine Environmental Research, 50:527-533.

Roegner, G. C. 2000. Transport of larval molluscs through a shallow estuary. Journal of Plankton Research, 22:1779-1800.

Roni, P., A. Fayram. 2000. Estimating winter salmonid abundance in small western Washington streams: a comparison of three techniques. North American Journal of Fisheries Management, 20:683-692.

Ryan, B., E. M. Dawley, R. A. Nelson. 2000. Modeling the effects of dissolved gas supersaturation on resident aquatic biota in the mainstem Snake and Columbia Rivers. North American Journal of Fisheries Management, 20:192-204.

Ryan, B., E. M. Dawley, R. A. Nelson. 2000. Modeling the effects of supersaturated dissolved gas on resident aquatic biota in the main-stem Snake and Columbia Rivers. North American Journal of Fisheries Management, 20:192-204.

Scholz, N. L., N. Truelove, B. L. French, B. A. Berejikian, T. P. Quinn, E. Casillas, T. K. Collier. 2000. Diazinon disrupts antipredator and homing behaviors in chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 57:1911-1918.

Zabel, R. W., J. G. Williams. 2000. Comments on "Contrasting patterns of productivity and survival rates for stream-type chinook salmon (Oncorhynchus tshawytscha) populations of the Snake and Columbia rivers" by Schaller et al. (1999). Canadian Journal of Fisheries and Aquatic Sciences, 57:1739-1741.

1999

Clemons, E. R., M. R. Arkoosh, E. Casillas. 1999. Enhanced superoxide anion production in activated peritoneal macrophages from English sole (Pleuronectes vetulus) exposed to polycyclic aromatic compounds. Marine Environmental Research, 47:71-87.

Gerber, I., P. Kareiva, D. P. DeMaster. 1999. Gray whales and the value of monitoring data in implementing the U.S. Endangered Species Act. Conservation Biology, 13:1215-1219.

Gomez-Gutierrez, J., W. T. Peterson. 1999. Egg production rates of eight calanoid copepod species during summer 1997 off Newport, Oregon, USA. Journal of Plankton Research, 21:637-657.

Kelly, N. M., D. Field, F. A. Cross, R. L. Emmett. 1999. Remote sensing of forest-clearing effects on essential fish habitat of Pacific salmon. American Fisheries Society Symposium, 22:252-267.

Krishnakumar, P. K., E. Casillas, R. G. Snider, A. N. Kagley, U. Varanasi. 1999. Environmental contaminants and the prevalence of hemic neoplasia (leukemia) in the common mussel (Mytilus edulis complex) from Puget sound, Washington, USA. Journal of Invertebrate Pathology, 73:135-146.

Marsh, D. M., G. M. Matthews, S. Achord, T. E. Ruehle, B. P. Sandford. 1999. Diversion of salmonid smolts tagged with passive integrated transponders from an untagged population passing through a juvenile collection system. North American Journal of Fisheries Management, 19:1142-1146.

Parker, I. M., D. Simberloff, W. M. Lonsdale, K. Goodell, M. Wonham, P. Kareiva, M. H. Williamson, B. Von Holle, P. B. Moyle, J. E. Byers, L. Goldwasser. 1999. Impact: Toward a Framework for Understanding the Ecological Effects of Invaders. Biological Invasions, 1:3-19.

Ruckelshaus, M. H., C. Hartway, P. Kareiva. 1999. Dispersal and landscape errors in spatially explicit population models: a reply. Conservation Biology, 13:1223-1224.

Wainwright, T. C., R. G. Kope. 1999. Methods of extinction risk assessment developed for U.S. West Coast salmon. ICES Journal of Marine Science, 56:444-448.

Williams, R. N., P. A. Bisson, D. L. Bottom, L. D. Calvin, C. C. Coutant, M. W. Erho, C. A. Frissell, J. A. Lichatowich, W. J. Liss, W. E. McConnaha, P. R. Mundy, J. A. Stanford, R. R. Whitney. 1999. Scientific issues in the restoration of salmonid fishes in the Columbia River. Fisheries, 24(3):10-25.

1998

Arkoosh, M. R., E. Casillas, E. R. Clemons, A. N. Kagley, R. Olson, P. Reno, J. E. Stein. 1998. Effect of pollution on fish diseases: Potential impacts on salmonid populations. Journal of Aquatic Animal Health, 10:182-190.

Arkoosh, M. R., E. R. Clemons, A. N. Kagley, R. Olson, P. Reno, E. Casillas, J. E. Stein. 1998. Effects of pollution of fish diseases: Potential impacts on salmonid populations. Journal of Aquatic Animal Health, 10:182-190.

Arkoosh, M. R., E. Casillas, P. A. Huffman, E. R. Clemons, J. Evered, J. E. Stein, U. Varanasi. 1998. Increased susceptibility of juvenile chinook salmon from a contaminated estuary to Vibrio anguillarum. Transactions of the American Fisheries Society, 127:360-374.

Kope, R. G., T. C. Wainwright. 1998. Trends in the status of Pacific salmon populations in Washington Oregon, California, and Idaho. North Pacific Anadromous Fish Commission Bulletin, 1:1-12.

McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1998. Benthic invertebrates and sediment characteristics in a shallow navigation channel of the lower Columbia River, before and after dredging. Northwest Science, 72:116-126.

Nunnallee, E. P., E. F. Prentice, B. F. Jonasson, W. Patten. 1998. Evaluation of a flat-plate PIT tag interrogation system at Bonneville Dam. Aquacultural Engineering, 17:261-272.

Roegner, G. C. 1998. Hydrodynamic control of the supply of suspended chlorophyll a to estuarine infaunal bivalves. Estuarine, Coastal and Shelf Science, 47:369-384.

Skalski, J. R., S. G. Smith, R. N. Iwamoto, J. G. Williams, A. Hoffman. 1998. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences, 55(6):1484-1493.

Wainwright, T. C., R. S. Waples. 1998. Prioritizing Pacific salmon stocks for conservation: Response to Allendorf et al. Conservation Biology, 12:1144-1147.

1997

Chapman, D., C. Carlson, D. Weitkamp, G. M. Matthews, J. Stevenson, M. Miller. 1997. Homing in sockeye and chinook salmon transported around part of their smolt migration route in the Columbia River. North American Journal of Fisheries Management, 17:101-113.

Elliott, D. G., R. J. Pascho, L. M. Jackson, G. M. Matthews, J. R. Harmon. 1997. Renibacterium salmoninarum in spring-summer chinook salmon smolts at dams on the Columbia and Snake Rivers. Journal of Aquatic Animal Health, 9:114-126.

Hockersmith, E. E., B. W. Peterson. 1997. Use of the global positioning system for locating radio-tagged fish from aircraft. North American Journal of Fisheries Management, 17:457-460.

Huffman, P. A., M. R. Arkoosh, E. Casillas. 1997. Characteristics of peripheral blood cells from rainbow trout evaluated by particle counter, image analysis, and hemocytometric techniques. Journal of Aquatic Animal Health, 9:239-248.

Johnson, L. L., S. Y. Sol, D. P. Lomax, G. M. Nelson, C. A. Sloan, E. Casillas. 1997. Fecundity and egg weight in English sole (Pleuronectes vetulus) from Puget Sound, Washington, U.S.A.: Influence of nutritional status and chemical contaminants. Fishery Bulletin, 92:232-250.

Krishnakumar, P. K., E. Casillas, U. Varanasi. 1997. Cytochemical responses in the digestive tissue of Mytilus edulis complex exposed to microencapsulated PAHs or PCBs. Comparative Biochemistry and Physiology, Part C: Toxicology and Pharmocology, 118:11-18.

Matthews, G. M., N. N. Paasch, S. Achord, K. W. McIntyre, J. R. Harmon. 1997. A technique to minimize the adverse ettects associated with handling and marking salmonid smolts. Progressive Fish-Culturist, 59:307-309.

McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett, B. P. Sandford. 1997. Benthic invertebrates and sediment characteristics in main channel habitats in the Lower Columbia River. Northwest Science, 71(1):45-55.

Meador, J. P., N. G. Adams, E. Casillas, J. L. Bolton. 1997. Comparative bioaccumulation of chlorinated hydrocarbons from sediment by two infaunal invertebrates. Archives of Environmental Contamination and Toxicology, 33:388-400.

Ruckelshaus, M. H., C. Hartway, P. Kareiva. 1997. Assessing the data requirements of spatially explicit dispersal models. Conservation Biology, 11:1298-1306.

Schiewe, M. H., T. A. Flagg, B. A. Berejikian. 1997. The use of captive broodstocks for gene conservation of salmon in the Western United States. Bull. Nat. Res. Inst. Aquacult. Suppl, Suppl. 3:29-34.

1996

Achord, S., G. M. Matthews, O. W. Johnson, D. M. Marsh. 1996. Use of passive integrated transponder (PIT) tags to monitor migration timing of Snake River chinook salmon smolts. North American Journal of Fisheries Management, 16:302-313.

Arkoosh, M. R., E. R. Clemons, P. A. Huffman, H. R. Sanborn, E. Casillas, J. E. Stein. 1996. Evaluation of the leukoproliferative response of English sole (Pleuronectes vetulus) as a biomarker for immune dysfunction. Marine Environmental Research, 42:181-186.

Arkoosh, M. R., E. R. Clemons, P. A. Huffman, H. R. Sanborn, E. Casillas, J. E. Stein. 1996. Leukoproliferative response of splenic leukocytes from English sole (Pleuronectes vetulus) exposed to chemical contaminants. Environmental Toxicology and Chemistry, 15(7):1154-1162.

Bentley, P. J., R. L. Emmett, N. C. Lo, H. G. Moser. 1996. Egg production of Pacific sardine (Sardinops sagax) off Oregon in 1994. California Cooperative Oceanic Fisheries Investigations Reports, 37:193-200.

Brege, D. A., R. F. Absolon, R. J. Graves. 1996. Seasonal and diel passage of juvenile salmonids at John Day Dam on the Columbia River. North American Journal of Fisheries Management, 16(3):659-665.

Maynard, D. J., D. A. Frost, F. W. Waknitz, E. F. Prentice. 1996. Vulnerability of marked age-0 steelhead to a visual predator. Transactions of the American Fisheries Society, 125:330-333.

Muir, W. D., T. C. Coley. 1996. Diet of yearling chinook salmon and feeding success during downstream migration in the Snake and Columbia Rivers. Northwest Science, 70(4):298-305.

1995

Krishnakumar, P. K., E. Casillas, U. Varanasi. 1995. Effects of chemical contaminants on the health of Mytilus edulis from Puget Sound, Washington .2. Cytochemical detection of subcellular changes in digestive cells. Marine Biology, 124:251-259.

Meador, J. P., E. Casillas, C. A. Sloan, U. Varanasi. 1995. Comparative bioaccumulation of polycyclic aromatic hydrocarbons from sediment by two infaunal invertebrates. Marine Ecology Progress Series, 123:107-124.

Rice, C. A., P. D. Plesha, E. Casillas, D. Misitano, J. P. Meador. 1995. Growth and survival of three marine invertebrate species in sediments from the Hudson-Raritan estuary, New York. Environmental Toxicology and Chemistry, 14:1931-1940.

Roegner, G. C., R. Mann. 1995. Early recruitment and growth of the American oyster, Crassostrea virginica (Bivalvia: Ostreidae) with respect to tidal zonation and season. Marine Ecology Progress Series, 117:91-101.

Wennergren, U., M. H. Ruckelshaus, P. Kareiva. 1995. The promise and limitations of spatial models in conservation biology. Oikos, 74:349-356.

Williams, J. G., G. M. Matthews. 1995. A review of flow and survival relationships for spring and summer chinook salmon, Oncorhynchus tshawytscha, from the Snake River Basin. Fishery Bulletin, 93:732-740.

1994

Arkoosh, M. R., E. R. Clemons, E. Casillas. 1994. Proliferative response of English sole splenic leukocytes to mitogens. Transactions of the American Fisheries Society, 123:230-241.

Arkoosh, M. R., E. R. Clemons, M. S. Myers, E. Casillas. 1994. Suppression of B-cell mediated immunity in juvenile chinook salmon (Oncorhynchus tshawytscha) after exposure to either a polycyclic aromatic hydrocarbon or to polychlorinated biphenyls. Immunopharmacology and Immunotoxicology, 16(2):293-314.

Giorgi, A. E., D. R. Miller, B. P. Sandford. 1994. Migratory characteristics of ocean-type chinook salmon, Oncorhynchus tshawytscha, in John Day Reservoir on the Columbia River. Fishery Bulletin, 92:872-879.

Harmon, J. R., K. L. Thomas, K. W. McIntyre, N. N. Paasch. 1994. Prevalence of marine-mammal tooth and claw abrasions on adult anadromous salmonids returning to the Snake River. North American Journal of Fisheries Management, 14:661-663.

Johnson, L. L., J. E. Stein, T. K. Collier, E. Casillas, U. Varanasi. 1994. Indicators of reproductive development in prespawning female winter flounder (Pleuronectes americanus) from urban and non-urban estuaries in the northeast United States. Science of the Total Environment, 141:241-260.

Krishnakumar, P. K., E. Casillas, U. Varanasi. 1994. Effect on the health of Mytilus edulis from Puget Sound Washington, Washington, USA. Cytochemical measures of lysosomal responses in the digestive cells using automatic image analysis. Marine Ecology Progress Series, 106:249-261.

McCutcheon, C. S., E. F. Prentice, D. L. Park. 1994. Passive monitoring of migrating adult steelhed with PIT tags. North American Journal of Fisheries Management, 14:220-223.

Misitano, D., E. Casillas, C. R. Haley. 1994. Effects of contaminated sediments on viability, length, DNA and protein content of larval surf smelt, Hypomesus pretiosus. Marine Environmental Research, 37:1-21.

Muir, W. D., W. S. Zaugg, A. E. Giorgi, C. S. McCutcheon. 1994. Accelerating smolt development and downstream movement in yearling chinook salmon with advanced photoperiod and increased temperature. Aquaculture, 123:387-399.

Muir, W. D., A. E. Giorgi, T. C. Coley. 1994. Behavioral and physiological changes in yearling chinook salmon during hatchery residence and downstream migration. Aquaculture, 127:69-82.

Peterson, N. P., E. F. Prentice, T. P. Quinn. 1994. Comparison of sequential coded wire and passive integrated transponder tags for assessing overwinter growth and survival of juvenile coho salmon. North American Journal of Fisheries Management, 14:870-873.

1993

Armstrong, D. A., T. C. Wainwright, G. C. Jensen, P. A. Dinnel, H. B. Andersen. 1993. Taking refuge from bycatch issues: red king crab (Paralithodes camtschaticus) and trawl fisheries in the eastern Bering Sea. Canadian Journal of Fisheries and Aquatic Sciences, 50:1993-2000.

Casillas, E., L. L. Johnson, D. Misitano, T. K. Collier, J. E. Stein, B. B. McCain, U. Varanasi. 1993. Inducibility of spawning, reproductive success, and egg production of flatfish species form urban and non-urban areas of Puget Sound, Washington. Marine Environmental Research, 35:227.

Demuth, S., E. Casillas, D. A. Wolfe, B. B. McCain. 1993. Toxicity of saline and organic solvent extracts of sediments from Boston Harbor, Massachusetts and the Hudson-Raritan Bay Estuary, New York using the Microtoxreg. Archives of Environmental Contamination and Toxicology, 25:377-386.

Ferguson, J. W. 1993. Improving fish survival through turbines. Hydro-Review, April 1993:54-61.

Johnson, L. L., E. Casillas, T. K. Collier, J. E. Stein, U. Varanasi. 1993. Contaminant effects on reproductive success in selected benthic fish. Marine Environmental Research, 35:165-170.

McCabe, G. T. Jr., R. L. Emmett, S. A. Hinton. 1993. Feeding ecology of juvenile white sturgeon (Acipenser transmontanus) in the lower Columbia River. Northwest Science, 67(3):170-180.

Stein, J. E., T. K. Collier, W. L. Reichert, E. Casillas, T. Hom, U. Varanasi. 1993. Bioindicators of Contaminant Exposure and Sublethal Effects in Benthic Fish from Puget Sound, WA. Marine Environmental Research, 35:95-100.

1992

Ferguson, J. W. 1992. Analyzing turbine bypass systems at hydro facilities. Hydro-Review, June 1992:46-56.

Johnson, L. L., E. Casillas, J. E. Stein, T. K. Collier, U. Varanasi. 1992. Contaminant effects on reproductive effects on reproductive success in selected benthic fish species. Marine Environmental Research, 35:165-170.

Stein, J. E., T. K. Collier, W. L. Reichert, E. Casillas, U. Varanasi. 1992. Bioindicators of contaminant exposure and sublethal effects: Studies with benthic fish in Puget Sound, WA. Environmental Toxicology and Chemistry, 11:701-714.

1991

Arkoosh, M. R., E. Casillas, E. R. Clemons, B. B. McCain, U. Varanasi. 1991. Suppression of immunological memory in juvenile chinook salmon (Oncorhynchus tshawytscha) from an urban estuary. Fish and Shellfish Immunology, 1:261-277.

Casillas, E., D. Misitano, L. L. Johnson, L. D. Rhodes, T. K. Collier, J. E. Stein, B. B. McCain, U. Varanasi. 1991. Inducibility of spawning and reproductive success of female English sole (Parophrys vetulus) from urban and nonurban areas of Puget Sound, Washington. Marine Environmental Research, 31:99-122.

Dey, D. B. 1991. Review of Drowning the Natural Heritage: Climate Change and U.S. Coastal Biodiversity by W. V. Reid and M. C. Trexler. Northwest Environmental Journal, 7:402-403.

Gessel, M. H., J. G. Williams, D. A. Brege, R. Krcma, D. R. Chambers. 1991. Juvenile salmonid guidance at the Bonneville Dam Second Powerhouse, Columbia River, 1983-1989. North American Journal of Fisheries Management, 11:400-412.

Johnson, L. L., E. Casillas, M. S. Myers, L. D. Rhodes, O. P. Olson. 1991. Patterns of oocyte development and related changes in plasma 17β estradiol, vitellogenin, and plasma chemistry in English sole Parophrys vetulus Girard. Journal of Experimental Marine Biology and Ecology, 152:161-185.

Roegner, G. C. 1991. Temporal analysis of the relationship between settlement and early recruitment in the oyster Crassostrea virginica (Gmelin). Journal of Experimental Marine Biology and Ecology, 151:57-69.

1990

Dey, D. B., D. M. Damkaer. 1990. Effects of spectral irradiance on the early development of chinook salmon. Progressive Fish-Culturist, 52:141-154.

Prentice, E. F., T. A. Flagg, C. S. McCutcheon, D. F. Brastow, D. C. Cross. 1990. Equipment, methods, and automated data entry station for PIT tagging. American Fisheries Society Symposium, 7:335-340.

Prentice, E. F., T. A. Flagg, C. S. McCutcheon. 1990. Feasibility of using implantable passive integrated transponder (PIT) tags in salmonids. American Fisheries Society Symposium, 7:317-322.

Prentice, E. F., T. A. Flagg, C. S. McCutcheon. 1990. PIT tag monitoring systems for hydroelectric dams and fish hatcheries. American Fisheries Society Symposium, 7:323-334.

Roegner, G. C., R. Mann. 1990. Settlement patterns of Crassostrea virginica (Gmelin) larvae in relation to tidal zonation. Journal of Shellfish Research, 9:341-346.

1989

Damkaer, D. M., D. B. Dey. 1989. Evidence for fluoride effects on salmon passage at John Day Dam, Columbia River, 1982-1986. North American Journal of Fisheries Management, 9:154-162.

1988

Dey, D. B., D. M. Damkaer, G. A. Heron. 1988. UV-B dose/dose-rate responses of seasonally abundant copepods of Puget Sound. Oecologia, 76:321-329.

Plesha, P. D., J. E. Stein, M. H. Schiewe, B. B. McCain, U. Varanasi. 1988. Toxicity of marine sediments supplemented with mixtures of chlorinated and aromatic hydrocarbons to the infaunal amphipod Rhepoxynius abronius. Marine Environmental Research, 25:85-97.

1987

Malins, D. C., B. B. McCain, M. S. Myers, D. W. Brown, M. M. Krahn, W. T. Roubal, M. H. Schiewe, J. T. Landahl, S. Chan. 1987. Field and laboratory studies of the etiology of liver neoplasms in marine fish from Puget Sound. Environmental Health Perspectives, 71:5-16.

Stein, J. E., T. Hom, E. Casillas, A. Freidman, U. Varanasi. 1987. Simultaneous exposure of English sole (Parophrys vetulus) to sediment-associated xenobiotics: Part 2 - Chronic exposure to an urban estuarine sediment with added 3H-benzo(a)pyrene and 14C-polychlorinated biphenyls. Marine Environmental Research, 22:123-149.

1985

Casillas, E., M. S. Myers, L. D. Rhodes, B. B. McCain. 1985. Serum chemistry of diseased English sole, Parophrys vetulus Girard, from polluted areas of Puget Sound, Washington. Journal of Fish Diseases, 8:437-449.

Gessel, M. H., W. Farr, C. Long. 1985. Underwater separation of juvenile salmonids by size. Marine Fisheries Review, 47(3):38-42.

Rhodes, L. D., E. Casillas, B. McKnight, W. D. Gronlund, M. S. Myers, O. P. Olson, B. B. McCain. 1985. Interactive effects of cadmium, polychlorinated biphenyls, and fuel oil on experimentally exposed English sole (Parophrys vetulus). Canadian Journal of Fisheries and Aquatic Sciences, 42:1870-1880.

Stein, J. E., T. Hom, E. Casillas, A. Freidman, U. Varanasi. 1985. Simultaneous Exposure of English sole (Parophrys vetulus) to Sediment-Associated Xenobiotics: Part 2 - Chronic Exposure to a Urban Estuarine Sediment Having Added 3H-Benzo(a)pyrene and 14C-Polychlorinated Biphenyls. Marine Environmental Research, 22:123-149.

1983

Damkaer, D. M., D. B. Dey. 1983. UV damage and photoreactivation potentials of larval shrimp, Pandalus platyceros, and adult euphausiids, Thysanoessa raschii. Oecologia, 60:169-175.

Flagg, T. A., E. F. Prentice, L. S. Smith. 1983. Swimming stamina and survival following direct seawater entry during parr-smolt transformation of coho salmon (Oncorhynchus kisutch). Aquaculture, 32:383-396.

1982

Gorbman, A., W. W. Dickhoff, J. L. Mighell, E. F. Prentice, F. W. Waknitz. 1982. Morphological indices of developmental progress in the parr-smolt coho salmon, Oncorhynchus kisutch. Aquaculture, 28:1-20.

1980

Damkaer, D. M., D. B. Dey, G. A. Heron, E. F. Prentice. 1980. Effects of UV-B radiation on near-surface zooplankton of Puget Sound. Oecologia, 44:149-158.

1976

Harrell, L. W., A. J. Novotny, M. H. Schiewe, H. O. Hodgins. 1976. Isolation and description of two vibrios pathogenic to Pacific salmon. Fishery Bulletin, 74(2):447-449.

Book

1999

Kareiva, P., S. Andelman, D. Doak, B. Elderd, M. Groom, J. M. Hoekstra, L. Hood, F. James, J. Lamoreux, G. LeBuhn, C. McCulloch, J. Regetz, L. Savage, M. H. Ruckelshaus, D. Skelly, H. Wilbur, K. Zamudio, E. Aas. 1999. Using science in habitat conservation plans. American Institute of Biological Sciences, Washington, D.C., vi, 97 p.

Section

2006

Good, T. P., D. Harstad, C. Hall, C. Maranto, M. Harper, B. Ryan. 2006. Predation on juvenile salmonids by Caspian Terns nesting in Potholes Reservoir. In Appendix in Piscivorous Waterbird Research on the Columbia River: draft 2005 season summary.

2005

Good, T. P., K. Barnas, D. M. Marsh, M. M. McClure, B. Ryan, B. P. Sandford, E. Casillas. 2005. Caspian Tern Predation on Juvenile Salmonid Outmigrants in the Columbia River Estuary. In Caspian Tern Management to Reduce Predation of Juvenile Salmonids in the Columbia River Estuary. U.S. Fish and Wildlife Service Migratory Birds and Habitat Programs, Portland, OR..

Moser, M. L., M. S. Myers, B. J. Burke, S. M. O'Neill. 2005. Effects of surgically-implanted transmitters on survival and feeding behavior of adult English sole. Pages 1-7 in Lembo, G., G. Marmulla, M. T. Spedicato. (Eds.) Aquatic Telemetry: Advances and Applications.

Moser, M. L., R. W. Zabel, B. J. Burke, L. C. Stuehrenberg, T. C. Bjornn. 2005. Factors affecting adult Pacific lamprey passage rates at hydropower dams: using time to event analysis of radiotelemetry data. In Lembo, G., G. Marmulla, M. T. Spedicato. (Eds.) Aquatic Telemetry: Advances and Applications.

Roni, P., A. Fayram, M. Miller. 2005. Monitoring and Evaluating Instream Habitat Enhancement. Pages 209-236 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

2004

Jacobson, K. C., R. E. Baldwin, D. J. Teel. 2004. Parasite community composition: Insights on the ecology and migration of juvenile salmon. Pages 49-51 in Workshop on Application of Stock Identification in defining Marine Distribution and Migration of Salmon. North Pacific Anadromous Fish Commission, Vancouver, BC.

Lundrigan, T. A., P. Moran, D. J. Teel, A. R. Marshall, S. F. Young, D. L. Bottom. 2004. Conservation and genetic stock identification: A study investigating the stock-specific distribution and performance of juvenile chinook salmon in the Columbia River estuary. Pages 70-71 in Workshop on Application of Stock Identification in defining Marine Distribution and Migration of Salmon. North Pacific Anadromous Fish Commission, Vancouver, BC.

2003

Ruckelshaus, M. H., P. McElhany, M. J. Ford. 2003. Recovering species of conservation concern: Are populations expendable? Pages 305-329 in Kareiva, P., S. A. Levin. (Eds.) The importance of species : perspectives on expendability and triage. Princeton University Press.

Schumacher, J. D., N. A. Bond, R. D. Brodeur, P. A. Livingston, J. M. Napp, P. J. Stabeno. 2003. Climate change in the Southeastern Bering Sea and some consequences for biota. Pages 17-40 in Hempel, G., K. Sherman. (Eds.) Large Marine Ecosystems of the World -- Trends in Exploitation, Protection and Research. Elsevier Science, Amsterdam.

2002

Moser, M. L., D. A. Close, J. Bayer, D. MacKinlay. 2002. Assessing status of Pacific lamprey (Lampetra tridentata) in the Columbia River Basin, U.S.A. In Lamprey Biology, International Congress on the Biology of Fishes Proceedings.

Zabel, R. W. 2002. Characterizing the migrational delay of adult salmon at dams using time-to-event analyses. Pages 35-39 in Chech, J. Jr., C. Swanson, P. S. Young, D. MacKinley. (Eds.) Proceedings of the Fish Passage and Migration Symposium, International Congress of the Biology of Fish, Vancouver, BC.

2001

Bottom, D. L. 2001. Bottlenecks, barges, and super fish: Rethinking conservation of estuaries and salmon. In Oregon salmon: Essays on the state of the fish at the turn of the millennium. Oregon Trout, Portland, OR.

Ledgerwood, R. D., B. Ryan, R. N. Iwamoto. 2001. Estuarine and nearshore-ocean acoustic tracking of juvenile spring chinook salmon from the Columbia River. Pages 245-255 in Moore, A., I. Russell. (Eds.) Advances in fish telemetry: proceedings of the 3rd conference on fish telemetry in Europe, June 20-25, 1999, Norwich, UK. Centre for Environment, Fisheries, and Aquaculture Science, Lowestoft, UK.

2000

Achord, S., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, G. A. Axel, G. M. Matthews. 2000. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts in the Columbia River Basin, USA. In International Congress of Fish Biology, Symposium Proceedings, July 23-27, 2000, Aberdeen, Scotland.

Brodeur, R. D., P. J. Bentley, R. L. Emmett, T. W. Miller, W. T. Peterson. 2000. Sardines in the ecosystem of the Pacific Northwest. Pages 90-94 in Proc. Sardine 2000 Symposium. Pacific States Marine Fish. Comm..

Busby, P. J., T. C. Wainwright, G. J. Bryant. 2000. Status review of steelhead from Washington, Idaho, Oregon, and California. Pages 119-132 in Knudsen, E. E., C. R. Steward, D. D. MacDonald, J. E. Williams, D. W. Reiser. (Eds.) Sustainable Fisheries Management: Pacific Salmon. Lewis Publishers, Boca Raton, FL.

Fisher, J. P., M. S. Myers. 2000. Fish necropsy. Pages 543-556 in Ostrander, G. K. (Ed.) The Handbook of Experimental Animals: The Laboratory Fish. Academic Press, London.

Holmes, E. E., P. Kareiva. 2000. Using single species measurements to anticipate community consequences of environmental contaminants. Page 344 in Albers, P., G. Heinz, H. Ohlendorf. (Eds.) Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems. Special Publication of SETAC Press.

Kareiva, P., M. Marvier. 2000. Concepts and theories in ecology. In Levin, S. A. (Ed.) Encyclopedia of Biodiversity. Academic Press, NY.

Ledgerwood, R. D., B. Ryan, R. N. Iwamoto. 2000. Estuarine and nearshore-ocean sonic tracking of juvenile spring chinook salmon from the Columbia River. In Proceedings of the 3rd conference on fish telemetry in Europe, June 20-25, 1999, Norwich, UK. Centre for Environment, Fisheries, and Aquaculture Science, Lowestoft, UK.

Schiewe, M. H., P. Kareiva. 2000. Salmon. In Levin, S. A. (Ed.) Encyclopedia of biodiversity. Academic Press, San Diego, CA.

Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, D. J. Teel, R. G. Kope. 2000. Review of the status of coho salmon from Washington, Oregon, and California. Pages 111-118 in Knudsen, E. E., C. R. Steward, D. D. MacDonald, J. E. Williams, D. W. Reiser. (Eds.) Sustainable Fisheries Management: Pacific Salmon. Lewis Publishers, Boca Raton, FL.

Zabel, R. W. 2000. Modeling the migratory behavior of juvenile salmon: what processes govern downstream movement? Pages 45-50 in Chech, J. Jr., S. D. McCormick, D. MacKinley. (Eds.) Proceedings of the Fish Migration and Passage Symposium, International Congress of the Biology of Fish, Aberdeen, Scotland, 2000.

1999

Casillas, E. 1999. Role of the Columbia River estuary and plume in salmon productivity. In Ocean conditions and the management of Columbia River salmon, proceeding of a symposium, July 1, 1999.

Peterson, W. T. 1999. Hydrography and zooplankton off the central Oregon coast during the 1997-1998 El Nino event. Pages 45-50 in Proceedings of the 1998 Science Board Symposium on the impacts of the 1997/98 El Nino event on the North Pacific Ocean and its marginal seas. PICES Scientific Report No.10.

Tynan, C. T. 1999. Redistributions of cetaceans in the southeast Bering Sea relative to anomalous oceanographic conditions during the 1997 El Nino event. Pages 115-117 in Proceedings of the 1998 Science Board Symposium on the impacts of the 1997/98 El Nino event on the North Pacific Ocean and its marginal seas. PICES Scientific Report No.10.

1998

Ferguson, J. W., T. P. Poe, T. Carlson. 1998. The design, development, and evaluation of surface oriented juvenile salmonid bypass systems on the Columbia River, USA. In Proceedings, International Conference on Fish Migration & Fish Bypass-Channels, Vienna, Austria. September 24-26, 1996.

McCain, B. B., A. D. MacCall, R. L. Emmett, R. D. Brodeur. 1998. Marine Resources: Pacific Coast Region. Pages 814-823 in Mac, M. J., P. A. Opler, C. E. Puckett Haecker, P. D. Doran. (Eds.) Status and Trends of The Nation's Biological Resources. Vol. 2. U. S. Department of the Interior, U. S. Geological Survey, Reston, VA.

Muir, W. D., S. G. Smith, E. E. Hockersmith, M. B. Eppard, W. P. Connor. 1998. Passage survival of hatchery subyearling fall chinook salmon to Lower Granite, Little Goose, and Lower Monumental Dams, 1996. In Williams, J. G., T. C. Bjornn. (Eds.) Fall chinook salmon survival and supplementation studies in the Snake and Lower Snake River reservoirs, 1996.

Ruckelshaus, M. H., C. Hays, P. Fiedler, P. Kareiva. 1998. Conservation of species in the sea. Pages 112-156 in Conservation Biology for the Coming Decade. Chapman and Hall, New York.

1997

Casillas, E., B. B. McCain, M. R. Arkoosh, J. E. Stein, U. Varanasi. 1997. Estuarine pollution and juvenile salmon health: Potential impact on survival. Pages 169-178 in Estuarine and Ocean Survival of Northeastern Pacific Salmon: Proceedings of the workshop, Newport, OR. , U. S. A. Emmett, R. L. , M. H. Schiewe. (Eds. ) 1997. Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. NOAA Technical Memorandum NMFS-NWFSC-29.

Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1997. Summary of the biological status review of Umpqua River sea-run cutthroat trout. Pages 87-102 in Hall, J. R. (Ed.) Sea-Run Cutthroat Trout: Biology, Management, and Future Conservation, proceedings of a symposium. Reedsport, OR, Oct. 12-14, 1995. Oregon Chapter, American Fisheries Society, Corvallis, Oregon.

Kareiva, P., D. Skelly, M. H. Ruckelshaus. 1997. Re-evaluating the use of models to predict the consequences of habitat loss and fragmentation. Pages 156-166 in Pickett, S. T., R. Ostfeld, M. Shachak, G. Likens. (Eds.) The Ecological Basis of Conservation: Heterogeneity, Ecosystems and Biodiversity. Chapman and Hall, NY.

Lawson, P. W. 1997. Interannual variability in growth and survival of chinook and coho salmon. In Emmett, R. L., M. H. Schiewe. (Eds.) Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-219.

Smith, S. G., W. D. Muir, E. E. Hockersmith, M. B. Eppard, W. P. Connor. 1997. Passage survival of natural and hatchery subyearling fall chinook salmon to Lower Granite, Little Goose, and Lower Monumental Dams. In Williams, J. G., T. C. Bjornn. (Eds.) Fall chinook salmon survival and supplementation studies in the Snake and Lower Snake River reservoirs, 1995.

Stein, J. E., L. L. Johnson, J. T. Landahl, T. K. Collier, E. Casillas, U. Varanasi. 1997. Approaches for determining effects of pollution on fish populations in Puget Sound. Pages 121-126 in Stephan, C. D., K. Beidler. (Eds.) Philadelphia, PA, Management of Atlantic Coastal Marine Fish Habitat: Proceedings of a Workshop for Habitat Managers.

1995

Casillas, E., M. R. Arkoosh, E. R. Clemons, T. Hom, D. Misitano, T. K. Collier, J. E. Stein, U. Varanasi. 1995. Chemical contaminant exposure and physiological effects in outmigrant juvenile Chinook salmon from urban estuaries of Puget Sound, Washington. Pages 86-102 in Keefe, M. (Ed.) Proceedings from the 1994 Northwest Pacific Chinook and Coho Workshop: Salmon Ecosystem Restoration: Myth and Reality.

Casillas, E., M. R. Arkoosh, E. R. Clemons, T. Hom, D. Misitano, T. K. Collier, J. E. Stein, U. Varanasi. 1995. Chemical contaminant exposure and physiological effects in outmigrant juvenile chinook salmon from urban estuaries of Puget Sound, Washington. Pages 657-665 in Proceedings Puget Sound Research '95.

Ferguson, J. W., R. W. Pearce, M. F. Lindgren, J. Nestler. 1995. Chapter 7: Fish Passage and Protection. In Guidelines for Design of Intakes for Hydroelectric Plants. American Society of Civil Engineers, New York, N. Y.

1994

Arkoosh, M. R., J. E. Stein, E. Casillas. 1994. Immunotoxicology of an anadromous fish: Field and laboratory studies of B-cell mediated immunity. Pages 33-48 in Stolen, J. S., T. C. Fletcher. (Eds.) Modulators of fish immune responses. Models for Environmental Toxicology/Biomarkers. Immunostimulators. Vol. 1. SOS Publications, Fair Haven, NY.

Williams, J. G., M. H. Gessel. 1994. Fish diversion and screening devices: Is there a relationship to fish behavior? Pages 135-140 in Proceedings of the Symposium on Fish Passage Policy and Technology, 1-2 September 1993, Portland, OR. Am. Fish Soc., Bioeng. Sec, Bethesda, MD.

1993

Casillas, E., J. E. Stein, M. R. Arkoosh, D. W. Brown, D. Misitano, S. Chan, U. Varanasi. 1993. Effects of estuarine habitat quality on juvenile salmon: I. Chemical contaminant exposure, and II. Altered growth and immune function. Pages 548-562 in Coastal Zone-93 Proceedings, The Eight Symposium on Coastal and Ocean Management, New Orleans, LA.

1992

Varanasi, U., J. E. Stein, L. L. Johnson, T. K. Collier, E. Casillas, M. S. Myers. 1992. Evaluation of bioindicators of contaminant exposure and effects in coastal ecosystems. Pages 461 - 498 in McKenzie, D. H., D. E. Hyatt, V. J. McDonald. (Eds.) Proceedings International Symposium Ecological Indicators. Elseveir Applied Science, Barking, England.

1991

Roegner, G. C., R. Mann. 1991. Habitat requirements for the hard clam, Mercenaria mercenaria, in Chesapeake Bay. In Funderburk, S. L., S. J. Jorden, J. A. Mihursky, D. Riley. (Eds.) Habitat requirements for Chesapeake Bay living resources. U. S. Fish Wildl. Ser..

1990

Flagg, T. A., L. W. Harrell, T. E. Ruehle, J. L. Mighell. 1990. Results of the Yakima Sockeye Project, 1989-1990. Page 2 in Proceedings of the 1990 Alaska Department of Fish and Game Sockeye Culture Workshop, Anchorage, AK.

1989

Johnson, L. L., E. Casillas, D. Misitano, T. K. Collier, J. E. Stein, B. B. McCain, U. Varanasi. 1989. Bioindicators of reproductive impairment in female English sole (Parophrys vetulus) exposed to environmental contaminants. Pages 391-396 in Proceed. Oceans '89.

1988

Flagg, T. A., E. F. Prentice. 1988. Status of the PIT tag system. Page 6 in Proceedings of the 38th Annual Fish Culture Conference, Tacoma, WA, 1987.

Flagg, T. A., E. F. Prentice. 1988. The PIT tag system and its suitability in sockeye salmon. Page 6 in Proceedings of the 1988 Alaska Department of Fish and Game Sockeye Culture Workshop, Ketchikan, AK.

Flagg, T. A., E. F. Prentice. 1988. Use of the PIT tag in fish migration studies. Page 1 in Proceedings of the 50th Annual Pacific Fisheries Biologists Meeting, Ocean Shores, WA.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Botulism of salmonids. Pages 336-338 in Sinderman, C. J., D. V. Lightner. (Eds.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Miscellaneous diseases and diseases of unknown etiology. Pages 347-353 in Sinderman, C. J., D. V. Lightner. (Eds.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Pacific salmon disease-general. Pages 319-322 in Sinderman, C. J., D. V. Lightner. (Eds.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Parvicapsula disease of salmonids. Pages 341-343 in Sinderman, C. J., D. V. Lightner. (Eds.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Schiewe, M. H., J. T. Landahl, M. S. Myers, P. D. Plesha, F. J. Jacques, J. E. Stein, B. B. McCain, D. D. Weber, S. Chan, U. Varanasi. 1988. Relating field and laboratory studies: Cause-and-effect research. Pages 577-584 in Proceedings of the Ist Annual Meeting on Puget Sound Research. Puget Sound Water Quality Authority, Seattle, WA.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Systemic fungal disease of salmonids. Pages 344-346 in Sinderman, C. J., D. V. Lightner. (Eds.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Schiewe, M. H., A. J. Novotny, L. W. Harrell. 1988. Vibriosis of salmonids. Pages 323-327 in Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Williams, J. G., M. H. Gessel, D. R. Chambers. 1988. Juvenile salmonid bypass system research at Bonneville Second Powerhouse, Columbia River. Pages [1-41]-[1-54] in Proceedings: Fish protection at steam and hydroelectric power plants. Electric Power Research Institute, Palo Alto, CA.

1982

Damkaer, D. M., D. B. Dey. 1982a. Nomograms for biologicially effective UV. Pages 205-211 in NATO Conference Series IV: Marine Sciences. Plenum Press, New York.

Damkaer, D. M., D. B. Dey. 1982b. Short-term responses of some planktonic crustacea exposed to enhanced UV-B radiation. Pages 417-427 in NATO Conference Series IV: Marine Sciences, Vol. 7.

1977

Hodgins, H. O., M. H. Schiewe, A. J. Novotny, L. W. Harrell. 1977. Furunculosis of salmon. Pages 237-240 in Sinderman, C. J. (Ed.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Hodgins, H. O., M. H. Schiewe, A. J. Novotny, L. W. Harrell. 1977. Kidney disease of salmon. Pages 241-244 in Sinderman, C. J. (Ed.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Hodgins, H. O., M. H. Schiewe, A. J. Novotny, L. W. Harrell. 1977. Miscellaneous disease and diseases of unknown etiology. Pages 245-249 in Sinderman, C. J. (Ed.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Hodgins, H. O., M. H. Schiewe, A. J. Novotny, L. W. Harrell. 1977. Pacific salmon disease-general. Pages 227-230 in Sinderman, C. J. (Ed.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Hodgins, H. O., M. H. Schiewe, A. J. Novotny, L. W. Harrell. 1977. Vibriosis of salmon. Pages 231-236 in Sinderman, C. J. (Ed.) Disease diagnosis and control in North American marine aquaculture. Elsevier Sci. Publ. Co., New York.

Contract Report

2007

Beamer, E. M., C. A. Rice, R. Henderson, K. L. Fresh, M. Rowse. 2007. Taxonomic Composition of Fish assemblages, and Density and Size of Juvenile Chinook Salmon in the Greater Skagit River Estuary: Field Sampling and Data Summary Report. Report to the Seattle District of the U.S. Army Corps of Engineers.

2006

Fresh, K. L., D. J. Small, H. Kim, C. Waldbillig, M. Mizell, M. I. Carr. 2006. Juvenile salmon use of Sinclair Inlet, Washington in 2001 and 2002. Report to the State of Washington, Department of Fish and Wildlife, Olympia, Washington, Contract FRT-05-06.

Kagley, A. N., K. L. Fresh, S. A. Hinton, G. C. Roegner, D. L. Bottom, E. Casillas. 2006. Habitat use by juvenile salmon in the Columbia River Estuary: Columbia River Channel Improvement Project research. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Portland District.

2005

Absolon, R. F., M. H. Gessel, B. P. Sandford, G. M. Matthews. 2005. Evaluation of fish condition with prototype vertical barrier screens at McNary Dam, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV20655422, vi, 23 p.

Absolon, R. F., B. P. Sandford, M. B. Eppard, D. A. Brege, K. W. McIntyre, E. E. Hockersmith, G. M. Matthews. 2005. Relative survival estimates for PIT-tagged juvenile chinook salmon passing through turbines, collection channels, and spillways at Ice Harbor Dam, 2003. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV92844866, v, 58 p.

Axel, G. A., D. A. Ogden, E. E. Hockersmith, M. B. Eppard, B. P. Sandford. 2005. Partitioning reach survival for steelhead between Lower Monumental and McNary Dams, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV92844866, vi, 35 p.

Brege, D. A., L. G. Gilbreath, R. F. Absolon, B. P. Sandford, G. M. Matthews. 2005. Studies to evaluate the effectiveness of extended-length screens at John Day Dam, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Portland District, Contract W66QKZ90392273, vi, 40 p.

Burke, B. J., K. Frick, M. L. Moser, T. J. Bohn, T. C. Bjornn. 2005. Adult fall chinook salmon passage through fishways at lower Columbia River dams in 1998, 2000, and 2001. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Project No. ADS-00-1 through 5 and ADS-00-12, vi, 82 p.

Eppard, M. B., B. P. Sandford, E. E. Hockersmith, G. A. Axel, D. B. Dey. 2005. Spillway passage survival of hatchery yearling and subyearling chinook salmon at Ice Harbor Dam, 2002. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV92844866.

Eppard, M. B., B. P. Sandford, E. E. Hockersmith, G. A. Axel, D. B. Dey. 2005. Spillway passage survival of hatchery yearling chinook salmon at Ice Harbor Dam, 2003. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV92844866, vi, 54 p.

Gessel, M. H., R. L. McComas, G. M. Matthews. 2005. Studies to establish biological design criteria for fish passage facilities: separation by size of juvenile salmonids using a high-velocity flume at Ice Harbor Dam in 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV00358064, vi, 18 p.

Hockersmith, E. E., G. A. Axel, M. B. Eppard, D. A. Ogden, B. P. Sandford. 2005. Passage behavior and survival for hatchery yearling chinook salmon at Lower Monumental Dam, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV92844866, vi, 63 p.

Ledgerwood, R. D., L. B. Way, A. S. Cameron, B. Ryan, B. P. Sandford, G. M. Matthews. 2005. Detection of PIT-tagged juvenile salmonids in the Columbia River estuary using pair-trawls, 2002. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Project No. 56ABNF100030, viii, 78 p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2005. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 2001: final report for the 2001 spring/summer chinook salmon juvenile migration. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Delivery Order E86960099, v, 20 p.

McComas, R. L., D. A. Frost, S. G. Smith, J. W. Ferguson, T. J. Carlson, T. Aboellail. 2005. A study to estimate salmonid survival through the Columbia River estuary using acoustic tags. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Portland District, Contract E86910060, vi, 78 p.

Moser, M. L., D. A. Ogden, C. Peery. 2005. Migration behavior of adult Pacific lamprey in the lower Columbia River and evaluation of Bonneville Dam modifications to improve passage, 2002. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract E96950021, vi, 59 p.

Muir, W. D., R. L. Emmett, R. A. McNatt. 2005. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ20374368, vi, 19 p.

Ogden, D. A., E. E. Hockersmith, M. B. Eppard, G. A. Axel, B. P. Sandford. 2005. Passage behavior and survival for river-run subyearling chinook salmon at Ice Harbor Dam, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract W68SBV92844866, vi, 41 p.

Ryan, B., A. S. Cameron, E. P. Nunnallee, J. W. Ferguson. 2005. Detection of Passive Integrated Transponder (PIT) tags on piscivorous bird colonies in the Columbia River Basin, 2002. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers. Walla Walla District, Contract 2RL4SPTP00, v, 25 p.

2004

Achord, S., R. A. McNatt, E. E. Hockersmith, B. P. Sandford, K. W. McIntyre, N. N. Paasch, J. G. Williams, G. M. Matthews. 2004. Monitoring the Migrations of Wild Snake River Spring/Summer Chinook Salmon Smolts, 2003. Report to the Bonneville Power Administration, Contract 00005619, 107 electronic pages.

Axel, G. A., E. E. Hockersmith, M. B. Eppard, B. P. Sandford. 2004. Passage and survival of hatchery yearling chinook salmon at McNary Dam, 2002. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV92844866, v, 35 p.

Axel, G. A., E. E. Hockersmith, M. B. Eppard, B. P. Sandford. 2004. Passage and survival of hatchery yearling chinook salmon at McNary Dam, 2003. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV92844866, v, 39 p.

Brege, D. A., R. F. Absolon, B. P. Sandford, J. W. Ferguson. 2004. Evaluation of extended-length submersible bar screens at John Day Dam, 2002. Report by Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, vi, 53 p.

Burke, B. J., T. J. Bohn, S. L. Downing, M. A. Jepson, C. Peery. 2004. Dam passage and fallback by chinook salmon and steelhead as determined by passive integrated transponder tags and radio tags. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland and Walla Walla Districts, Project No. ADS-00-14, vi, 58 p.

Gessel, M. H., B. P. Sandford, J. W. Ferguson. 2004. Studies to establish biological design criteria for fish passage facilities: prototype testing of a cylindrical dewatering screen at McNary Dam 2001-2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers Walla Walla District, vi, 19 p p. (PDF | Video files index page)

Gilbreath, L. G., E. F. Prentice, S. L. Downing. 2004. Post-construction evaluation of the juvenile bypass collection channel, transportation flume, and fish-monitoring facilities at Bonneville Dam second powerhouse, 1999-2000. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ90281485.

Harmon, J. R., N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2004. Transportation of juvenile salmonids on the Columbia and Snake Rivers, 2003: Final report for 2000 spring/summer chinook slamon. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District.

Hockersmith, E. E., G. A. Axel, M. B. Eppard, B. P. Sandford. 2004. Survival of juvenile salmonids through the Lower Monumental Dam Spillway, 2003. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV92844866, vi, 42 p.

Ledgerwood, R. D., S. W. Naman, B. Ryan, B. P. Sandford, C. Z. Banks, J. W. Ferguson. 2004. Detection of PIT-tagged juvenile salmonids in the Columbia River estuary using a pair-trawl, 2000 and 2001. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV80622741, viii, 103 p. (PDF | HTML)

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2004. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 2002. Report of research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers Walla Walla District, v, 42 p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2004. Transportation of juvenile salmonids on the Columbia and Snake Rivers, 2003: Final report for 2000 and 2001 steelhead juveniles. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Delivery Order E86960099, vi, 57 p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2004. Transportation of juvenile salmonids on the Columbia and Snake Rivers, 2003: final adult returns for wild yearling chinook salmon migrating in 2000. Report of research by Fish Ecology Division, Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract E86960099, vi, 48 p. (PDF | HTML)

Monk, B. H., B. P. Sandford, D. A. Brege, J. W. Ferguson. 2004. Evaluation of turbine intake modifications at Bonneville Dam second powerhouse, 2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland, OR, vi, 48 p p.

Muir, W. D., R. L. Emmett. 2004. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2002. Report by Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, vi, 14 p.

Muir, W. D., R. L. Emmett, R. A. McNatt. 2004. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2003. Report of research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland, OR, v, 14 p p.

Muir, W. D., R. A. McNatt, G. A. Axel, S. G. Smith, D. M. Marsh, J. G. Williams. 2004. Survival of subyearling fall chinook salmon in the free-flowing Snake River and lower Snake River Reservoirs, 2003, and from McNary Dam tailrace to John Day Dam tailrace in the Columbia River, 1999-2002. Report to the Bonneville Power Administration, Contract DE-AI179-93BP10891, Project No. 199302900.

Roegner, G. C., D. L. Bottom, A. M. Baptista, J. Burke, S. A. Hinton, D. A. Jay, C. A. Simenstad, E. Casillas, K. K. Jones. 2004. Estuarine habitat and juvenile salmon: current and historical linkages in the lower Columbia River and estuary, 2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ20374382, vi, 62 p.

2003

Absolon, R. F., M. B. Eppard, B. P. Sandford, G. A. Axel, E. E. Hockersmith, J. W. Ferguson. 2003. Effects of turbines operating at two different discharge levels on survival and condition of yearling chinook salmon at McNary Dam, 2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, v, 20 p.

Achord, S., E. E. Hockersmith, B. P. Sandford, R. A. McNatt, B. E. Feist, G. M. Matthews. 2003. Monitoring the Migrations of Wild Snake River Spring/Summer Chinook Salmon Smolts, 2002. Report to the Bonneville Power Administration, Contract 00005619, 95 electronic pages. (BPA Report DOE/BP-1991-028-00)

Axel, G. A., E. F. Prentice, B. P. Sandford. 2003. Evaluation of a full-flow PIT-tag interrogation system at McNary Dam, 2002. Report by Fish Ecology Division. Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV10333831, 36 p.

Axel, G. A., E. E. Hockersmith, M. B. Eppard, B. P. Sandford, S. G. Smith, D. B. Dey. 2003. Passage behavior and survival of hatchery yearling chinook salmon passing Ice Harbor and McNary Dams during a low flow year, 2001. Report by Fish Ecology Division, Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Walla Walla District, 37 p.

Downing, S. L., B. P. Sandford, G. A. Axel, E. F. Prentice. 2003. Evaluation of the TX-1400ST PIT Tag Using Juvenile and Adult Salmonids. Report to the Bonneville Power Administration, Contract 307-00001, 17 p.

Glabek, J. H., B. Ryan, E. P. Nunnallee, J. W. Ferguson. 2003. Detection of Passive Integrated Transponder (PIT) Tags on Piscivorous Bird Colonies in the Columbia River Basin, 2001. Report to the U.S. Army Corps of Engineers, Walla Walla District, Delivery Order 2RL4SPTP00. (PDF | HTML)

Hockersmith, E. E., S. L. Downing, D. B. Dey. 2003. Post-construction evaluation of the modified PIT-tag diversion and bypass system at Little Goose Dam, 2002. Report by Fish Ecology Division. Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV10182881, iv, 17 p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2003. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 2001. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, v, 38 p.

McComas, R. L., B. P. Sandford, C. D. Magie, J. W. Ferguson. 2003. Biological design criteria for fish passage facilities: high-velocity flume development and improved wet-separator efficiency McNary Dam, 1999. Report to the U.S. Army Corps of Engineers, Walla Walla District, Delivery Order E86910060, 24 p. plus appendices.

McComas, R. L., B. P. Sandford, C. D. Magie, J. W. Ferguson, D. M. Katz, M. Plummer. 2003. Evaluation of a prototype high-velocity flume separator at Ice Harbor Dam, 1999. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, vi, 76 p.

Moser, M. L., D. A. Ogden, S. G. McCarthy, T. C. Bjornn. 2003. Migration behavior of adult Pacific lamprey in the lower Columbia River and evaluation of Bonneville Dam modifications to improve passage, 2001. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, v, 50 p.

2002

Achord, S., G. A. Axel, E. E. Hockersmith, B. P. Sandford, M. B. Eppard, G. M. Matthews. 2002. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 2001. Report by National Marine Fisheries Service to the U.S. Department of Energy, Bonneville Power Administration, Portland, Oregon.

Axel, G. A., R. W. Zabel, B. P. Sandford, D. B. Dey. 2002. Evaluation of juvenile fall chinook salmon passage through the McNary Dam juvenile fish bypass system to identify areas of delay. Report by Fish Ecology Division. Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV10182878.

Eppard, M. B., E. E. Hockersmith, G. A. Axel, B. P. Sandford. 2002. Spillway survival for hatchery yearling and subyearling chinook salmon passing Ice Harbor Dam, 2000. Report by National Marine Fisheries Service to the U.S. Army Corps of Engineers, Walla Walla, Washington.

Hockersmith, E. E., B. P. Sandford, D. B. Dey. 2002. Post-construction evaluation of the modified PIT-tag diversion system at Lower Granite Dam, 2001. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV10182881, ii, 12 p.

Moser, M. L., L. C. Stuehrenberg, W. Cavender, S. G. McCarthy, T. C. Bjornn. 2002. Radiotelemetry investigations of adult Pacific lamprey migration behavior: evaluation of modifications to improve passage at Bonneville Dam, 2000. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service to the U.S. Army Corps of Engineers, v, 79 p.

Nunnallee, E. P., E. F. Prentice. 2002. Development of full-flow PIT-tag interrogation systems for Snake and Columbia River dams. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV10333831, 22 p.

Ryan, B., C. Z. Banks, E. P. Nunnallee, R. D. Ledgerwood, J. W. Ferguson. 2002. Detection of passive integrated transponder (PIT) tags on piscivorous bird colonies in the Columbia River Basin, 1998 and 1999. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV806ZZ741, iii, 15 p.

Ryan, B., J. H. Glabek, J. W. Ferguson, E. P. Nunnallee, R. D. Ledgerwood. 2002. Detection of passive integrated transponder (PIT) tags on piscivorous bird colonies in the Columbia River Basin, 2000. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV806ZZ741, v, 78 p.

Ryan, B., J. H. Glabek, J. W. Ferguson, E. P. Nunnallee, R. D. Ledgerwood. 2002. Detection of passive integrated transponder tags on piscivorous birds colonies in the Columbia River Basin, 2000. Report by National Marine Fisheries Service to the U.S. Army Corps of Engineers, Walla Walla, Washington.

Smith, S. G., W. D. Muir, E. E. Hockersmith, G. A. Axel, W. P. Connor, B. D. Arnsberg. 2002. Survival of hatchery subyearling fall chinook salmon in the Snake River and lower Snake River reservoirs, 1998-2001. Report by National Marine Fisheries Service to the U.S. Department of Energy, Bonneville Power Administration, Portland, Oregon.

Zabel, R. W., S. G. Smith, W. D. Muir, D. M. Marsh, J. G. Williams, J. R. Skalski. 2002. Survival estimates for the passage of spring-migrating juvenile salmonids through Snake and Columbia River dams and reservoirs, 2001. Annual Report to the Bonneville Power Administration, Portland OR, Contract DE-AI79-93BP10891, Project No. 93-29, 95 p.

2001

Achord, S., G. A. Axel, E. E. Hockersmith, B. P. Sandford, M. B. Eppard, G. M. Matthews. 2001. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1999. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Project 91028, Contract 99-AI-19164, 38 p. plus appendix.

Achord, S., G. A. Axel, E. E. Hockersmith, B. P. Sandford, M. B. Eppard, G. M. Matthews. 2001. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 2000. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Contract 99-AI-19164, Project No. 9102800, 45 p. plus appendices.

Achord, S. 2001. PIT tagging juvenile salmonids in the Lake Washington Ship Canal for the Lake Washington General Investigation Study, 2001. Report to the U.S. Army Corps of Engineers, Seattle District, Contract W68MD911063244, 7 p. plus appendix.

Axel, G. A., D. B. Dey. 2001. Evaluation of subyearling fall chinook salmon passage in the McNary Dam juvenile fish bypass facility, 2000. Report to the U.S. Army Corps of Engineers, Walla Walla District, 9 p.

Bottom, D. L., C. A. Simenstad, A. M. Baptista, D. A. Jay, J. Burke, K. K. Jones, E. Casillas, M. H. Schiewe. 2001. Salmon at river's end: the role of the estuary in the decline and recovery of Columbia River salmon. Report to the U.S. Department of Energy, Bonneville Power Administration, Contract 98-AI06603, 255 p. plus appendix.

Brege, D. A., J. W. Ferguson, R. F. Absolon, B. P. Sandford. 2001. Evaluation of extended-length bypass screens at John Day Dam, 1999. Report to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ90392273, 21 p. plus appendices.

Brege, D. A., M. H. Gessel, R. F. Absolon, B. P. Sandford, J. W. Ferguson. 2001. Studies to evaluate the effectiveness of outlet flow-control and debris control devices at McNary and Little Goose Dams, 1998. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract E86970083, 16 p. plus appendices.

Downing, S. L., E. F. Prentice, B. W. Peterson, E. P. Nunnallee, B. F. Jonasson. 2001. Development and evaluation of passive integrated transponder tag technology: annual report, 1999 to 2000. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Contract 307-00001, Project No. 83-319, 31 p.

Gessel, M. H., J. W. Ferguson. 2001. Evaluation of a high-velocity induction/release system for testing turbine-related injuries to juvenile salmonids at hydroelectric projects. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV82443526, 7 p. plus appendix.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2001. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 2000. Annual report of research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 27 p. plus appendix.

McComas, R. L., M. H. Gessel, B. P. Sandford, D. B. Dey. 2001. Biological design criteria for juvenile fish passage, 1998: high-velocity flume development and improved wet-separator efficiency. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract E86910060, 33 p. plus appendix.

Monk, B. H., B. P. Sandford. 2001. Evaluation of extended-length submersible bar screens at Bonneville Dam first powerhouse, 2000. Report by National Marine Fisheries Service to the U.S. Army Corps of Engineers, Portland, Oregon.

Ocker, P. A., L. C. Stuehrenberg, M. L. Moser, A. L. Matter, J. J. Vella, B. P. Sandford, T. C. Bjornn, K. R. Tolotti. 2001. Monitoring adult Pacific lamprey (Lampetra tridentata) migration behavior in the lower Columbia River using radiotelemetry, 1998-99. Report to the U.S. Army Corps of Engineers, Portland District, Contract E96950021, 72 p.

Ryan, B., C. Z. Banks, E. P. Nunnallee, R. D. Ledgerwood, J. W. Ferguson. 2001. Detection of passive integrated transponder (PIT) tags on piscivorous bird colonies in the Columbia River Basin, 1998 and 1999. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV806ZZ741, 13 p.

Vella, J. J., L. C. Stuehrenberg, M. L. Moser, T. C. Bjornn. 2001. Migration patterns of Pacific lamprey (Lampetra tridentata) in the lower Columbia River, 1997. Report to the U.S. Army Corps of Engineers, Portland District, Contract E96950021, 32 p. plus appendix.

Zabel, R. W., S. G. Smith, W. D. Muir, D. M. Marsh, J. G. Williams, J. R. Skalski. 2001. Survival estimates for the passage of spring-migrating juvenile salmonids through Snake and Columbia River dams and reservoirs, 2000. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Contract DE-AI79-93BP10891, Project No. 93-29, 62 p.

2000

Absolon, R. F., D. A. Brege, J. W. Ferguson. 2000. Post-construction evaluation of the juvenile bypass system at John Day Dam, 1999. Report to the U.S. Army Corps of Engineers, Contract W66QKZ80354028, 14 p.

Absolon, R. F., B. P. Sandford, D. B. Dey. 2000. Post-construction evaluation of the new juvenile bypass system and guidance screen modifications at John Day Dam, 1998. Report to the U.S. Army Corps of Engineers, Contract W66QKZ80354028, 34 p. plus appendices.

Achord, S., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, G. A. Axel, G. M. Matthews. 2000. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1998. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Contract DE-AI79-91BP18800, Project No. 9102800, 38 p. plus appendix.

Dawley, E. M., L. G. Gilbreath, R. F. Absolon, B. P. Sandford, J. W. Ferguson. 2000. Relative survival of juvenile salmon passing through the spillway and the ice trash sluiceway of The Dalles Dam, 1998. Report to the U.S. Army Corps of Engineers, Contract MIPR E96970020, W66QKZ82167243 and W66QKZ83437725, 47 p. plus appendices.

Dawley, E. M., C. J. Ebel, R. F. Absolon, B. P. Sandford, J. W. Ferguson. 2000. Relative survival of juvenile salmon passing through the spillway of The Dalles Dam, 1999. Report to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ83437725, 42 p. plus appendices.

Downing, S. L., E. F. Prentice, B. W. Peterson, E. P. Nunnallee, B. F. Jonasson. 2000. A study to determine the biological feasibility of a new fish-tagging system, 1998-1999. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 29 p. plus appendix.

Eppard, M. B., G. A. Axel, B. P. Sandford, D. B. Dey. 2000. Effects of spill on the passage of hatchery yearling chinook salmon at Ice Harbor Dam, 1999. Report to the U.S. Army Corps of Engineers, Contract W66QKZ91521282, 31 p.

Flagg, T. A., T. E. Ruehle. (Eds.) 2000. Cle Elum Lake salmon restoration feasibility study: summary of research. Final Report to the Bonneville Power Administration, Contract 86-BP64840, 110 p.

Gessel, M. H., B. H. Monk, B. P. Sandford, J. W. Ferguson. 2000. Evaluation of a chamfered perforated plate for extended-length bar screens at Little Goose and McNary Dams, 1999. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV80210987, 10 p. plus appendix.

Gessel, M. H., B. P. Sandford, J. W. Ferguson. 2000. Evaluation of the effectiveness of an orifice shelter at McNary Dam, Columbia River, 1999. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV80210987, 10 p. plus appendix.

Gilbreath, L. G., D. Smith, R. D. Ledgerwood, S. S. Pool, S. J. Grabowski. 2000. Limnological investigations in John Day reservoir including selected upper reservoir habitats, April 1994 to September 1995. Report to the U.S. Army Corps of Engineers, Contract W66QKZ833356795, 152 p.

Harmon, J. R., D. M. Marsh, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2000. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1999. Annual report of research to the U.S. Army Corps of Engineers, 28 p. plus appendix.

Hockersmith, E. E., W. D. Muir, S. G. Smith, B. P. Sandford, N. S. Adams, J. M. Plumb, R. W. Perry, D. W. Rondorf. 2000. Comparative performance of sham radio-tagged and PIT-tagged juvenile salmon. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract W66QKZ91521282, 25 p.

Hockersmith, E. E., W. D. Muir, B. P. Sandford, S. G. Smith. 2000. Evaluation of specific trouble areas in the juvenile fish facility at Lower Monumental Dam for fish passage improvement, 1999. Report to the U.S. Army Corps of Engineers, Contract W66QKZ91521283, 21 p. plus appendices.

Ledgerwood, R. D., B. Ryan, E. P. Nunnallee, J. W. Ferguson. 2000. Estuarine recovery of PIT-tagged salmonids from the Lower Granite Dam transportation study, 1998. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract E8960100, 50 p. plus appendices.

Ledgerwood, R. D., S. S. Pool, L. G. Gilbreath, S. J. Grabowski, D. Smith. 2000. Limnology of selected shallow-water habitats in Lower Granite reservoir, 1994-95. Report to the U.S. Army Corps of Engineers, Contract E86940115, 46 p. plus appendices.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 2000. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1998. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract 68-84-H0034, 34 p. plus appendix.

McComas, R. L., M. H. Gessel, B. P. Sandford, D. B. Dey, D. M. Katz. 2000. Biological design criteria for improved wet-separator efficiency and high-velocity flume development, 1997. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract E86910060, 22 p. plus appendices.

Smith, S. G., W. D. Muir, S. Achord, E. E. Hockersmith, B. P. Sandford, J. G. Williams, J. R. Skalski. 2000. Survival estimates for the passage of juvenile salmonids through Snake and Columbia River dams and reservoirs, 1998. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 80 p. Available on BPA web site

Smith, S. G., W. D. Muir, G. A. Axel, R. W. Zabel, J. G. Williams, J. R. Skalski. 2000. Survival estimates for the passage of juvenile salmonids through Snake and Columbia River dams and reservoirs, 1999. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 70 p. Available on BPA web site

1999

Absolon, R. F., E. M. Dawley, B. P. Sandford. 1999. Changes in gas bubble disease signs of migrating juvenile salmonids experimentally exposed to supersaturated gasses, 1997. Report to the Bonneville Power Administration, Contract 96-BI-93892, 16 p.

Brege, D. A., M. H. Gessel, R. F. Absolon, B. P. Sandford, J. W. Ferguson. 1999. Studies to evaluate the effectiveness of outlet flow-control and debris control devices at McNary and Little Goose Dams, 1998. Report to the U.S. Army Corps of Engineers, Contract E86970083, 20 p. plus appendices.

Hockersmith, E. E., S. G. Smith, W. D. Muir, B. P. Sandford, J. G. Williams, J. R. Skalski. 1999. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1997. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 60 p.

Monk, B. H., M. H. Gessel, J. W. Ferguson. 1999. An evaluation of the biological database for improving fish guidance efficiency at Bonneville Dam Second Powerhouse. Report to the U.S. Army Corps of Engineers, Contract W66QKZ90059456, 62 p.

Monk, B. H., B. P. Sandford, D. B. Dey. 1999. Evaluation of extended-length submersible bar screens at Bonneville Dam First Powerhouse, 1998. Report to the U.S. Army Corps of Engineers, Contract W66QK80545753, 32 p. plus appendices.

Muir, W. D., S. G. Smith, E. E. Hockersmith, M. B. Eppard, W. P. Connor, T. Andersen, B. D. Arnsberg. 1999. Fall chinook salmon survival and supplementation studies in the snake River and lower Snake River reservoirs, 1997. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891 and DE-AI79-93BP21708, 66 p.

Prentice, E. F., S. L. Downing, E. P. Nunnallee, B. W. Peterson, B. F. Jonasson. 1999. A study to determine the biological feasibility of a new fish-tagging system (1997-98). Report to the Bonneville Power Administration, Contract 97-AI-31168, 41 p.

Prentice, E. F., S. L. Downing, E. P. Nunnallee, B. Peterson, B. F. Jonasson. 1999. A study to determine the biological feasibility of a new fish-tagging system, 1998-1999. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 38 p. plus appendix.

1998

Achord, S., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, G. M. Matthews. 1998. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1997. Report to the Bonneville Power Administration, Contract DE-AI79-91BP18800, 78 p.

Dawley, E. M., L. G. Gilbreath, R. D. Ledgerwood, P. J. Bentley, B. P. Sandford. 1998. Effects of bypass systems at Bonneville Dam Second Powerhouse on downstream migrant salmon and steelhead; direct capture assessment, 1990-1992. Final report of research by Fish Ecology Division, Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Contract DACW57-85-H-0001, 53 p. plus appendices.

Eppard, M. B., G. A. Axel, B. P. Sandford, G. M. Matthews. 1998. Ice Harbor Dam spill efficiency determined by radio telemetry, 1997. Report of research to the U.S. Army Corps of Engineers, Walla Walla District, Delivery Order E86970079, 23 p.

Hinton, S. A. 1998. Benthic infauna and sediment characteristics offshore from the Columbia River, October/November 1995 and June 1996. Report to the U.S. Army Corps of Engineers, Contract E96960001, 51 p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 1998. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1997. Annual report of research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 17 p. plus appendix.

McCabe, G. T. Jr., S. A. Hinton. 1998. Benthic Invertebrates and Sediment Characteristics in and Adjacent to a Proposed Channel Widening Area (River Mile 31-34), Columbia River Estuary. Report by National Marine Fisheries Service to the U.S. Army Corps of Engineers, Contract E96970007, 21 p.

McComas, R. L., M. H. Gessel, B. P. Sandford, D. B. Dey. 1998. Studies to establish biological design criteria for wet separators, 1996. Report to the U.S. Army Corps of Engineers, Contract E86910060, 44 p.

Muir, W. D., S. G. Smith, K. W. McIntyre, B. P. Sandford. 1998. Project survival of juvenile salmonids passing through the bypass system, turbines, and spillways with and without flow deflectors at Little Goose Dam, 1997. Report to the U.S. Army Corps of Engineers, Contract E86970085, 47 p.

Ryan, B., E. M. Dawley. 1998. Effects of dissolved gas supersaturation on fish residing in the Snake and Columbia rivers, 1997. Report to the Bonneville Power Administration, Contract 96-BI-93605, 50 p.

1997

Achord, S., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, G. M. Matthews. 1997. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1996. Report to the Bonneville Power Administration, Contract DE-AI79-91BP18800, Project No. 91-28, 74 p.

Brege, D. A., R. F. Absolon, B. P. Sandford, D. B. Dey. 1997. Studies to evaluate the effectiveness of extended-length screens at John Day Dam, 1996. Report to the U.S. Army Corps of Engineers, Contract E96960028, 41 p.

Brege, D. A., R. F. Absolon, B. P. Sandford, D. B. Dey. 1997. Studies to evaluate the effectiveness of extended-length screens at The Dalles Dam, 1995. Report to the U.S. Army Corps of Engineers, Contract E96930030, 24 p. plus appendices.

Gessel, M. H., B. P. Sandford, D. B. Dey. 1997. Post-construction evaluation of the juvenile salmonid bypass system at Ice Harbor Dam, 1996. Report to the U.S. Army Corps of Engineers, Contract E86960098, 20 p.

Ledgerwood, R. D., E. M. Dawley, B. W. Peterson, R. N. Iwamoto. 1997. Estuarine recovery of PIT-tagged juvenile salmonids from the Lower Granite Dam transportation study, 1996. Report to the U.S. Army Corps of Engineers, Contract E8960100, 54 pgs. plus appendice p.

Marsh, D. M., J. R. Harmon, N. N. Paasch, K. L. Thomas, K. W. McIntyre, B. P. Sandford, G. M. Matthews. 1997. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1996. Annual report of research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 26 p. plus appendix.

McComas, R. L., B. P. Sandford, D. B. Dey. 1997. Descaling and orifice passage efficiency studies at McNary Dam, 1995. Report to the U.S. Army Corps of Engineers, Contract E86910060, 35 p.

Monk, B. H., B. P. Sandford, D. B. Dey. 1997. Evaluation of orifice passage efficiency and descaling with an extended-length bar screen, new vertical barrier screen, and inlet flow vane at Lower Granite Dam, 1995. Report to the U.S. Army Corps of Engineers, Contract E86950104, 25 p.

Pool, S. S., R. D. Ledgerwood. 1997. Benthic invertebrates in soft-substrate, shallow-water habitats in Lower Granite Reservoir, 1994-95. Report to the U.S. Army Corps of Engineers, Contract E86940115, 96 p.

Shrank, B. P., E. M. Dawley, B. Ryan. 1997. Evaluation of the effects of dissolved gas supersaturation on fish and invertebrates in Priest Rapids Reservoir, and downstream from Bonneville and Ice Harbor Dams, 1995. Report to the U.S. Army Corps of Engineers, Contract E96940029, 45 p.

Smith, S. G., W. D. Muir, E. E. Hockersmith, S. Achord, M. B. Eppard, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1997. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1996. Draft Annual Report to the Bonneville Power Administration, Portland, OR, Contract DE-AI79-93BP10891, Project 93-29, and U.S. Army Corps of Engineers, Walla Walla, WA, Project E86940119, Contract DE-AI79-93BP10891.

Swan, G. A., M. B. Eppard, B. L. Iverson, M. A. Kaminski. 1997. Evaluation of the effectiveness of radio-telemetry methods to monitor passge routes of juvenile salmonids at Ice Harbor Dam, 1996. Report to the U.S. Army Corps of Engineers, Contract E86-95-0113, 33 p.

Swan, G. A., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, B. L. Iverson, P. A. Ocker, M. A. Kaminski, R. N. Iwamoto. 1997. Juvenile radio-telemetry study at Ice Harbor Dam, 1995. Report to the U.S. Army Corps of Engineers, Contract E86-95-0113, 34 p.

Williams, J. G., T. C. Bjornn. 1997. Fall chinook salmon survival and supplementation studies in the Snake River and Lower Snake River Reservoirs, 1995. Report to the Bonneville Power Administration, Contract 93-AI-10891, 84 p.

1996

Achord, S., M. B. Eppard, B. P. Sandford, G. M. Matthews. 1996. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1995. Report to the Bonneville Power Administration, Contract DE-A179-91BP18800, Project No. 91-028, 179 p.

Gessel, M. H., B. P. Sandford, D. B. Dey. 1996. Studies to evaluate the effectiveness of extended-length screens at Little Goose Dam, 1995. Annual Report to the U.S. Army Corps of Engineers, Delivery Order E86920164, 17 p.

Harmon, J. R., N. N. Paasch, K. W. McIntyre, K. L. Thomas, B. P. Sandford, G. M. Matthews. 1996. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1994. Annual report of research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 18 p. plus appendix.

Hinton, S. A., R. L. Emmett. 1996. Benthic infauna and sediment characteristics offshore from the Columbia River, August 1994. Report to the U.S. Army Corps of Engineers, Contract E96930048, 43 p.

Marsh, D. M., L. K. Timme, B. P. Sandford, S. Achord, G. M. Matthews. 1996. Preliminary evaluation of the new juvenile collection, bypass, and sampling facilities at Lower Monumental Dam, 1994. Report of Research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 54 p.

Marsh, D. M., B. H. Monk, B. P. Sandford, G. M. Matthews. 1996. Preliminary evaluation of the new juvenile collection, bypass, and sampling facilities at McNary Dam, 1994. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract DACW68-84-H-0034, 39 p. plus appendix.

Marsh, D. M., J. R. Harmon, K. W. McIntyre, K. L. Thomas, N. N. Paasch, B. P. Sandford, D. J. Kamikawa, G. M. Matthews. 1996. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1995. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract DACW68-84-H-0034, 43 p. plus appendix.

McCabe, G. T. Jr., S. A. Hinton. 1996. Benthic invertebrates and sediment characteristics at 10 dredged-material disposal areas (beach nourishment) in the lower Columbia River, 1994-1995. Report to the U.S. Army Corps of Eningeers, Contract E96940050, 110 p.

McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1996. Benthic invertebrates and sediment characteristics in Wahkiakum County Ferry Channel, Washington, before and after dredging. Report to the U.S. Army Corps of Engineers, Contract 96930051, 32 p.

Muir, W. D., S. G. Smith, E. E. Hockersmith, S. Achord, R. F. Absolon, P. A. Ocker, M. B. Eppard, T. E. Ruehle, J. G. Williams, R. N. Iwamoto, J. R. Skalski. 1996. Survival estimates for the passage of the yearling chinook salmon and steelhead through Snake River dams and reservoirs, 1995. Report to the Bonneville Power Administration, Contract E86940119, 88 p. plus appendices.

Sandford, B. P., T. E. Ruehle. 1996. Juvenile salmonid pit-tag studies at Prosser Dam and the Chandler Canal Fish Collection Facility, Yakima River, 1991 and 1992. Final. Report to the Bonneville Power Administration, Contract DE-AI79-90BP07099, 97 p.

Williams, J. G., M. H. Gessel, B. P. Sandford, J. J. Vella. 1996. Evaluation of factors affecting juvenile chinook salmon fish guidance efficiency. Report to the U.S. Army Corps of Engineers, Project No. E86910059, 35 p.

1995

Absolon, R. F., D. A. Brege, B. P. Sandford, D. B. Dey. 1995. Studies to evaluate the effectiveness of extended-length screens at The Dalles Dam, 1994. Report to the U.S. Army Corps of Engineers, Contract E96930030, 69 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1994. Report to the Bonneville Power Administration, Contract DE-A179-91BP18800, Project No. 91-028, 100 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the smolt migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Emmett, R. L., S. A. Hinton. 1995. Benthic infauna and sediment characteristics offshore from the Columbia River, July 1993. Report to the U.S. Army Corps of Engineers, Contract E96930048, 56 p.

Gessel, M. H., B. P. Sandford, D. B. Dey. 1995. Studies to evaluate the effectiveness of extended-length screens at Little Goose Dam, 1994. Report to the U.S. Army Corps of Engineers, Contract E86920164, 33 p.

Harmon, J. R., D. J. Kamikawa, B. P. Sandford, K. W. McIntyre, K. L. Thomas, N. N. Paasch, G. M. Matthews. 1995. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1993. Report to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 37 p. plus appendices.

Hockersmith, E. E., J. J. Vella, L. C. Stuehrenberg. 1995. Yakima River radio-telemetry study, rainbow trout. Annual Report 1993. Report to the Bonneville Power Administration, Contract DE-AI79-BP00276, 29 p.

Hockersmith, E. E., J. J. Vella, L. C. Stuehrenberg, R. N. Iwamoto, G. A. Swan. 1995. Yakima River radio-telemetry study: Steelhead, 1989-93. Report to the Bonneville Power Administration, Contract DE-AI79-89BP00276, 95 p.

Hockersmith, E. E., J. J. Vella, L. C. Stuehrenberg, R. N. Iwamoto, G. A. Swan. 1995. Yakima River radio-telemetry study: spring chinook salmon,1995. Report to the Bonneville Power Administration, Contract DE-AI79-89BP00276, 63 p. plus appendices.

Marsh, D. M., B. P. Sandford, G. M. Matthews. 1995. Preliminary evaluation of the new collection, bypass, and sampling facilities at Lower Monumental Dam, 1993. Annual report of research to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 48 p. plus appendix.

McComas, R. L., B. P. Sandford, D. B. Dey. 1995. Vertical barrier screen studies at McNary Dam, 1994. Report to the U.S. Army Corps of Engineers, Contract E86910060, 103 p.

Monk, B. H., B. P. Sandford, D. B. Dey. 1995. Evaluation of fish guidance efficiency of submersible traveling screens and other modifications at Bonneville Dam Second Powerhouse, 1994. Report to the U.S. Army Corps of Engineers, Contract E96940027, 25 p.

Muir, W. D., R. N. Iwamoto, C. R. Pasley, B. P. Sandford, P. A. Ocker, T. E. Ruehle. 1995. Relative survival of juvenile chinook salmon after passage through spillbays and the tailrace at Lower Monumental Dam, 1994. Report to the U.S. Army Corps of Engineers, Contract E86940101, 28 p.

Muir, W. D., S. G. Smith, R. N. Iwamoto, D. J. Kamikawa, K. W. McIntyre, E. E. Hockersmith, B. P. Sandford, P. A. Ocker, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1995. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1994. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 187 p.

Toner, M. A., B. Ryan, E. M. Dawley. 1995. Evaluation of the effects of dissolved gas supersaturation on fish and invertebrates downstream from Bonneville, Ice Harbor, and Priest Rapids Dams, 1994. Report to the U.S. Army Corps of Engineers, Contract E96940029, 38 p.

1994

Achord, S., G. M. Matthews, D. M. Marsh, B. P. Sandford, D. J. Kamikawa. 1994. Monitoring the migrations of wild Snake River spring and summer chinook salmon smolts, 1992. Report to the Bonneville Power Administration, Contract DE-AI79-91BP18800, 73 p.

Brege, D. A., R. F. Absolon, B. P. Sandford, D. B. Dey. 1994. Studies to evaluate the effectiveness of extended-length screens at The Dalles Dam, 1993. Report to the U.S. Army Corps of Engineers, Contract E96930030, 72 p.

Emmett, R. L., P. J. Bentley. 1994. Bottom trawling in Half Moon Bay, Grays Harbor, Washington, 12 april 1994. Report to the U.S. Army Corps of Engineers, Contract E86-94-3084, 16 p.

Gessel, M. H., B. P. Sandford, D. B. Dey. 1994. Studies to evaluate the effectiveness of extended-length screens at Little Goose Dam, 1993. Report to the U.S. Army Corps of Engineers, Delivery Order E86920164, 42 p.

Hinton, S. A., R. L. Emmett. 1994. Demersal fishes, benthic and epibenthic invertebrates, and sediment characteristics at and adjacent to offshore disposal Site F, Coos Bay, Oregon, April and October 1992. Report to the U.S. Army Corps of Engineers, Contract E96920027 and E96920028, 90 p.

Iwamoto, R. N., W. D. Muir, B. P. Sandford, K. W. McIntyre, D. A. Frost, J. G. Williams, S. G. Smith, J. R. Skalski. 1994. Survival estimates for the passage of juvenile chinook salmon through Snake River dams and reservoirs. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 140 p.

McComas, R. L., B. P. Sandford, D. B. Dey. 1994. Studies to evaluate the effectiveness of extended-length screens at McNary Dam, 1993. Report to the U.S. Army Corps of Engineers, 109 p.

Monk, B. H., B. P. Sandford, D. B. Dey. 1994. Evaluation of fish guidance efficiency of submersible traveling screens and other modifications at Bonnneville Dam second powerhouse, 1993. Report to the U.S. Army Corps of Engineers, 48 p.

Prentice, E. F., D. J. Maynard, S. L. Downing, D. A. Frost, M. S. Kellett, D. A. Bruland, P. Sparks-Mcconkey, F. W. Waknitz, R. N. Iwamoto, K. W. McIntyre, N. N. Paasch. 1994. A study to determine the biological feasibility of a new fish tagging system (1990-93). Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 250 p.

Ruehle, T. E., C. S. McCutcheon. 1994. PIT-Tag studies with juvenile salmonids at the Chandler Canal Fish Collection Facility, Yakima River, 1990. Report to the Bonneville Power Administration, Contract DE-AI79-90BP07099, 37 p. plus appendices.

1993

Gessel, M. H., W. D. Muir, B. P. Sandford, D. B. Dey. 1993. Evaluation of the new juvenile salmonid bypass system at Lower Monumental Dam, 1992. Report to the U.S. Army Corps of Engineers, Contract E86920053, 23 p.

Gilbreath, L. G., E. M. Dawley, R. D. Ledgerwood, P. J. Bentley, S. J. Grabowski. 1993. Relative survival of subyearling chinook salmon that have passed Bonneville Dam via the spillway or second powerhouse turbines or bypass system: adult recoveries through 1991. Report to the U.S. Army Corps of Engineers, Contract E96910013, 26 p.

Harmon, J. R., B. P. Sandford, K. L. Thomas, N. N. Paasch, K. W. McIntyre, G. M. Matthews. 1993. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1992. Annual Report to the U.S. Army Corps of Engineers, Contract DACW68-84-H0034, 25 p. plus appendices (162 p.).

Hinton, S. A., R. L. Emmett. 1993. Demersal fishes, benthic and epibenthic invertebrates, and sediment characteristics at and adjacent to offshore disposal Site F, Coos Bay, Oregon, April 1992. Report to the U.S. Army Corps of Engineers, Contract E96920027 and E96920028, 54 p.

Iwamoto, R. N., J. G. Williams. 1993. Juvenile salmonid passage and survival through turbines. Report to the U. S. Army Corps of Engineers, Contract E86920049, 27 p.

McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1993. Benthic and epibenthic invertebrates, fishes, and sediments at and adjacent to a proposed new site for Area D, an in-water dredged-material disposal site in the Lower Columbia River, 1991. Final Report to the U.S. Army Corps of Engineers, Contract E96910017 and E96910040, 42 p.

McCabe, G. T. Jr., S. A. Hinton. 1993. Benthic invertebrates and sediments in vegetated and nonvegetated habitats at three intertidal areas of the Columbia River estuary, 1992. Report to the U. S. Army Corp of Engineers, Contract E9592012, 37 p.

McComas, R. L., D. A. Brege, W. D. Muir, B. P. Sandford, D. B. Dey. 1993. Studies to determine the effectiveness of extended-length submersible bar screens at McNary Dam, 1992. Report to the U.S. Army Corp of Engineers, Delivery Order E86910060, 85 p.

Monk, B. H., J. A. Ross, B. P. Sandford, D. B. Dey. 1993. Continuing studies to measure and improve fish guidance efficiency of submersible traveling screens at Bonneville Dam First Powerhouse, 1992. Report to the U.S. Army Corps of Engineers, Delivery Order E96920019, 32 p.

Muir, W. D. (Ed.) 1993. Research plan to determine timing, location magnitude, and cause of mortality for wild & hatchery spring/summer chinook salmon smolts above Lower Granite Dam. Report to the Bonneville Power Administration, Contract DE-AI79-92BP61176, DOE/BP61176-1, 75 p.

Prentice, E. F., D. J. Maynard, P. Sparks-Mcconkey, C. S. McCutcheon, D. Neff, W. Steffens, F. W. Waknitz, A. L. Jensen, L. C. Stuehrenberg, S. L. Downing, B. P. Sandford, T. W. Newcomb. 1993. A study to determine the biological feasibility of a new fish tagging system. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 182 p.

Siipola, M. D., R. L. Emmett, S. A. Hinton. 1993. Tongue point monitoring program, 1989-1992. Report to the U.S. Army Corps of Engineers, 63 p. plus appendices (72 p.).

Weitkamp, L. A., D. B. Dey. 1993. Environmental monitoring of the Manchester Naval Fuel Pier replacement, Puget Sound, Washington, 1992. Report to the Department of Navy, Contract N62474-91-MP-00758, 62 p.

1991

Dey, D. B. 1991. Environmental monitoring of the Manchester Naval Fuel Pier replacement, Puget Sound, Washington. Report to the Department of Navy, Contract N62474-91-MP-00758, 53 p.

1990

Gessel, M. H., D. A. Brege, B. H. Monk, J. G. Williams. 1990. Continued studies to evaluate the juvenile bypass systems at Bonneville Dam - 1989. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Portland District, Seattle, WA, Contract DACW77-88-F-9999, 34 p.

1989

Gessel, M. H., B. H. Monk, D. A. Brege, J. G. Williams. 1989. Fish guidance efficiency studies at Bonneville First and Second Powerhouses, 1988. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Seattle, WA, Delivery Order DACW57-87-F-0322, 36 p.

1988

Gessel, M. H., B. H. Monk, J. G. Williams. 1988. Evaluation of the juvenile fish collection and bypass systems at Bonneville Dam - 1987. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Contract DACW57-87-F-0322, 131 p.

1987

Damkaer, D. M., D. B. Dey. 1987. Mid-Columbia River feasibility study: physical and chemical analyses of Handford Reach sediment. Report to the U.S. Army Corps of Engineers, Seattle, Contract E86-86-3300.

Gessel, M. H., L. G. Gilbreath, W. D. Muir, B. H. Monk, R. Krcma. 1987. Evaluation of the juvenile salmonid collection and bypass systems at Bonneville Dam - 1986. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-86-F-0270, 53 p.

Monk, B. H., W. D. Muir, M. H. Gessel. 1987. Studies to evaluate alternative methods of bypassing juvenile fish at the Dalles Dam, 1986. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-85-H-0295, 16 p.

1986

Damkaer, D. M., D. B. Dey. 1986b. Industrially-polluted sediments of the Columbia River near Wenatchee, Washington. Preliminary Report to the U.S. Environmental Protection Agency, Seattle, Contract DW13931749-01.0.

Gessel, M. H., L. G. Gilbreath, W. D. Muir, R. Krcma. 1986. Evaluation of the juvenile collection and bypass systems at Bonneville Dam - 1985. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-85-H-0001, 63 p.

1985

Damkaer, D. M., D. B. Dey. 1985. Effects of water-borne pollutants on salmon passage at John Day Dam, Columbia River (1982-1984). Report to the U.S. Army Corps of Engineers, 85 p.

Gessel, M. H., R. Krcma, W. D. Muir, C. S. McCutcheon, L. G. Gilbreath, B. H. Monk. 1985. Evaluation of the juvenile collection and bypass system at Bonneville Dam, 1984. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-84-F-0181, 48 p.

1984

Damkaer, D. M., D. B. Dey. 1984. Adult fish delay at John Day Dam. Report to the U.S. Army Corps of Engineers, 26 p.

Krcma, R., M. H. Gessel, W. D. Muir, C. S. McCutcheon, L. G. Gilbreath, B. H. Monk. 1984. Evaluation of the juvenile collection and bypass system at Bonneville Dam - 1983. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-83-F-0315, 56 p.

1983

Damkaer, D. M., D. B. Dey. 1983. Effects of water-borne pollutants on fish passage at John Day Dam, Columbia River. Report to the U.S. Army Corps of Engineers, 77 p.

Krcma, R., M. H. Gessel, F. J. Ossiander. 1983. Research at McNary Dam to develop and implement a fingerling protection system for John Day Dam. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-82-F-0373, 24, 3, 5 p.

1982

Krcma, R., D. DeHart, M. H. Gessel, C. Long, C. W. Sims. 1982. Evaluation of submersible traveling screens, passage of juvenile salmonids through the ice and trash sluiceway, and cycling of gatewell orifice operation at the Bonneville Dam First Powerhouse, 1981. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Center to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-81-F-0343, 36, [25] p.

1979

Krcma, R., C. Long, C. Thompson, W. Farr, T. W. Newcomb, M. H. Gessel. 1979. The development of an improved fingerling protection system for low head dams, 1978. Report by Northwest and Alaska Fisheries Center, Coastal Zone and Estuarine Studies Division to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-79-F-0163, 40 p.

1978

Ruehle, T. E., C. Long, M. H. Gessel. 1978. Laboratory studies of a nontraveling bar screen for guiding juvenile salmonids out of turbine intakes. Report by Northwest and Alaska Fisheries Science Center, Division of Coastal Zone and Estuarine Studies to the U.S. Army Corps of Engineers, Seattle, WA, Contract DACW57-77-F-0071, 14 p.

Technical Memorandum

2008

Wainwright, T. C., M. W. Chilcote, P. W. Lawson, T. E. Nickelson, C. W. Huntington, J. S. Mills, K. M. Moores, G. H. Reeves, H. A. Stout, L. A. Weitkamp. 2008. Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-91, 199 p.

2007

Lawson, P. W., E. P. Bjorkstedt, M. W. Chilcote, C. W. Huntington, J. S. Mills, K. M. Moores, T. E. Nickelson, G. H. Reeves, H. A. Stout, T. C. Wainwright, L. A. Weitkamp. 2007. Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-79, 129 p.

Sheridan, P., J. W. Ferguson, and S. L. Downing (editors). 2007. Report of the National Marine Fisheries Service Workshop on Advancing Electronic Tag Technology and Their Use in Stock Assessments. U.S. Dept. Commerce, NOAA Tech. Memo. NMFSF/ SPO-82, 82 p.

2006

Pool, S. S., R. D. Brodeur. 2006. Neustonic mesozooplankton abundance and distribution in the northern California Current, 2000 and 2002. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-74, 76 p.

2005

Bottom, D. L., C. A. Simenstad, J. Burke, A. M. Baptista, D. A. Jay, K. K. Jones, E. Casillas, M. H. Schiewe. 2005. Salmon at river's end: The role of the estuary in the decline and recovery of Columbia River salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-68, 246 p.

Ferguson, J. W., G. M. Matthews, R. L. McComas, R. F. Absolon, D. A. Brege, M. H. Gessel, L. G. Gilbreath. 2005. Passage of adult and juvenile salmonids through Federal Columbia River Power System dams. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-64, 160 p.

Fresh, K. L., E. Casillas, L. L. Johnson, D. L. Bottom. 2005. Role of the estuary in the recovery of Columbia River Basin salmon and steelhead: An evaluation of the effects of selected factors on salmonid population viability. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-69, 105 p.

Williams, J. G., S. G. Smith, R. W. Zabel, W. D. Muir, M. D. Scheuerell, B. P. Sandford, D. M. Marsh, R. A. McNatt, S. Achord. 2005. Effects of the Federal Columbia River Power System on Salmonid Populations. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-63, 150 p.

2003

MacCall, A. D., T. C. Wainwright. (Eds.) 2003. Assessing extinction risk for West Coast salmon, proceedings of the workshop November 13-15, 1996, Seattle, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-56, 198 p.

2001

Emmett, R. L., P. J. Bentley, G. K. Krutzikowsky. 2001. Ecology of marine predatory and prey fishes off the Columbia River, 1998 and 1999. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-51, 108 p. (PDF | HTML)

2000

Hinton, S. A., R. L. Emmett. 2000. Biological surveys of the Trestle Bay Enhancement Project 1994 and 1996-1997. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-39, 72 p. (PDF | HTML)

McElhany, P., M. H. Ruckelshaus, M. J. Ford, T. C. Wainwright, E. P. Bjorkstedt. 2000. Viable salmon populations and the recovery of evolutionarily significant units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-42, 156 p.

1998

Myers, J. M., R. G. Kope, G. J. Bryant, D. J. Teel, L. J. Lierheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neely, S. Lindley, R. S. Waples. 1998. Status review of Chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-35, 443 p. (PDF | HTML)

1997

Emmett, R. L., M. H. Schiewe. (Eds.) 1997. Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-29, 313 p. (PDF | HTML)

Genovese, P. V., R. L. Emmett. 1997. Desktop geographic information systems for salmonid resources in the Columbia River Basin. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-34, 32 p.

Gustafson, R. G., T. C. Wainwright, G. A. Winans, F. W. Waknitz, L. T. Parker, R. S. Waples. 1997. Status review of sockeye salmon from Washington and Oregon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-33, 282 p. (PDF | HTML)

1996

Busby, P. J., T. C. Wainwright, G. J. Bryant, L. J. Lierheimer, R. S. Waples, F. W. Waknitz, I. V. Lagomarsino. 1996. Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-27, 261 p. (PDF | HTML)

McCabe, G. T. Jr., S. A. Hinton. 1996. Benthic invertebrates and sediment characteristics in freshwater, beach habitats of the lower Columbia River, 1994-95. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-26, 111 p.

1995

Hinton, S. A., G. T. McCabe Jr., R. L. Emmett. 1995. In-water restoration between Miller Sands and Pillar Rock Island, Columbia River: Environmental surveys, 1992-93. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-23, 47 p. (PDF | HTML)

Waknitz, F. W., G. M. Matthews, T. C. Wainwright, G. A. Winans. 1995. Status review for mid- Columbia River summer chinook salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-22, 80 p.

Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, G. B. Milner, D. J. Teel, R. G. Kope, R. S. Waples. 1995. Status review of coho salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-24, 258 p. (PDF | HTML)

1994

Busby, P. J., T. C. Wainwright, R. S. Waples. 1994. Status review for Klamath Mountains Province steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-19, 130 p.

Gessel, M. H., B. P. Sandford, B. H. Monk, D. A. Brege. 1994. Population Estimates of Northern Squawfish, Ptychocheilus oregonensis, at Bonneville Dam First Powerhouse, Columbia River. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-18, 21 p.

Hinton, S. A., R. L. Emmett. 1994. Juvenile salmonid stranding in the lower Columbia River, 1992 and 1993. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-20, 48 p.

Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1994. Status review for Oregon's Umpqua River sea-run cutthroat trout. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-15, 122 p.

1993

Busby, P. J., O. W. Johnson, T. C. Wainwright, F. W. Waknitz, R. S. Waples. 1993. Status review for Oregon's Illinois River winter steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-10, 85 p.

Dey, D. B. (Ed.) (Ed.) 1993. Coastal Zone and Estuarine Studies Division research activities and accomplishments: 1980-89. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-7, 205 p.

Furota, T., R. L. Emmett. 1993. Seasonal changes in the intertidal and subtidal macrobenthic invertebrate community structure in Baker Bay, Lower Columbia River estuary. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-5, 68 p.

Ledgerwood, R. D., E. M. Dawley, P. J. Bentley, L. G. Gilbreath, T. P. Poe, H. L. HANSEN. 1993. Effectiveness of predator removal for protecting juvenile fall chinook salmon released from Bonneville Hatchery, 1991. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-9, 63 p.

Varanasi, U., E. Casillas, M. R. Arkoosh, T. Hom, D. Misitano, D. W. Brown, S. Chan, T. K. Collier, B. B. McCain, J. E. Stein. 1993. Contaminant exposure and associated biological effects in juvenile Chinook salmon (Oncorhynchus tshawytscha) from urban and nonurban estuaries of Puget Sound, WA. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-8, 112 p.

1992

Johnson, L. L., J. E. Stein, T. K. Collier, E. Casillas, B. B. McCain, U. Varanasi. 1992. Bioindicators of contaminant exposure, liver pathology and reproductive development in prespawning female winter flounder (Pleuronectes americanus) from urban and nonurban estuaries on the Northeast Atlantic coast. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-01, 76 p.

1991

Matthews, G. M., R. S. Waples. 1991. Status Review for Snake River Spring and Summer Chinook Salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-200.

Report

2005

Jepson, M. A., C. Peery, M. L. Keefer, B. J. Burke. 2005. Run-timing, Escapement, and Estimated Harvest of Upriver Bright Fall Chinook Salmon in the Columbia River, 1998 and 2000-2004. Report to Pacific Salmon Commission Idaho Cooperative Fish and Wildlife Research Unit, University of Idaho, Moscow.

Keefer, M. L., C. Peery, W. R. Daigle, M. A. Jepson, S. R. Lee, C. T. Boggs, K. R. Tolotti, T. C. Bjornn, B. J. Burke, M. L. Moser, L. C. Stuehrenberg. 2005. Escapement, Harvest, and Unaccounted-for Loss of Radio-Tagged Adult Chinook Salmon and Steelhead in the Columbia-Snake River Hydrosystem, 1996-2002. Report to U.S. Army Corps of Engineers Idaho Cooperative Fish and Wildlife Research Unit, University of Idaho, Moscow.

2003

Keefer, M. L., C. Peery, B. J. Burke. 2003. Passage of radio-tagged adult salmon and steelhead at John Day Dam with emphasis on fishway temperatures: 1997-1998. Technical Report, 2003-1, Idaho Cooperative Fish and Wildlife Research Unit, University of Idaho, Moscow.

Ledgerwood, R. D., B. Ryan, C. Z. Banks, E. P. Nunallee, B. P. Sandford, S. G. Smith, J. W. Ferguson. 2003. Detection of PIT-tagged juvenile salmonids in the Columbia River estuary using a surface-trawl detection system, 1999. Report of Research, Fish Ecology Division, Northwest Fisheries Science Center, v, 66 p.

2002

Absolon, R. F., E. M. Dawley, B. P. Sandford, J. W. Ferguson, D. A. Brege. 2002. Relative survival of juvenile salmon passing through the spillway of The Dalles Dam, 1997-2000. Report of Research, Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, ix, 150 p.

Adams, P., C. B. Grimes, J. Hightower, S. Lindley, M. L. Moser. 2002. Status Review for North American Green Sturgeon, Acipenser medirostris. Southwest Fisheries Science Center, National Marine Fisheries Service, Santa Cruz, CA, iv, 49 p.

Monk, B. H., R. F. Absolon, B. P. Sandford, J. W. Ferguson. 2002. Evaluation of intake modifications at Bonneville Dam second powerhouse, 2001. Report of Research, Fish Ecology Division, Northwest Fisheries Science Center, v, 40 p.

1999

Eppard, M. B., S. G. Smith, B. P. Sandford, G. A. Axel, J. G. Williams, R. D. McDonald. 1999. Survival estimates for the passage of yearling fall chinook salmon through Rocky Reach and Rock Island Dams, 1998. Report to, Public Utility District No. 1 of Chelan County, 62 p.

Matthews, G. M. 1999. Truck transportation of juvenile salmonids at U.S. Army Corps of Engineers Dams. National Marine Fisheries Service, Northwest Fisheries Science Center, Seattle, Washington, 29 p.

1997

Casillas, E., B. L. Eberhart, F. Sommers, T. K. Collier, M. M. Krahn, J. E. Stein. 1997. Effects of Chemical Contaminants from the Hylebos Waterway on Growth of Juvenile Chinook Salmon: Hylebos Interpretive Report.

1995

Stuehrenberg, L. C., G. A. Swan, L. K. Timme, P. A. Ocker, M. B. Eppard, R. N. Iwamoto, B. L. Iverson, B. P. Sandford. 1995. Migrational characteristics of adult spring, summer, and fall chinook salmon passing through reservoirs and dams of the Mid-Columbia River. Report to Mid-Columbia River Public Utility Districts, 132 p.

1994

Hinton, S. A., R. L. Emmett. 1994. Benthic infauna, sediment, and fish offshore from the Columbia River, July 1992. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, 60 p.

Ledgerwood, R. D., E. M. Dawley, L. G. Gilbreath, L. T. Parker, B. P. Sandford, S. J. Grabowski. 1994. Relative survival of subyearling chinook salmon after passage through the bypass system at the first powerhouse or a turbine at the first or second powerhouse and through the tailrace basins at Bonneville Dam, 1992. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, ii, 83 p.

Swan, G. A., M. B. Eppard, P. A. Ocker, R. N. Iwamoto, B. P. Sandford. 1994. Biological evluation of the prototype gatewell lift-tank system at lower Granite Dam, 1994. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, 41 p.

Swan, G. A., L. K. Timme, R. N. Iwamoto, L. C. Stuehrenberg, E. E. Hockersmith, B. L. Iverson, B. P. Sandford. 1994. Wells Dam radio-telemetry study, 1992. Public Utility District No. 1 of Douglas County, 70 p.

1993

McCabe, G. T. Jr., R. L. Emmett, S. A. Hinton. 1993. In-water restoration between Miller Sands and Pillar Rock Island, Columbia River: Biological surveys, 1992. Report to National Marine Fisheries Service, Habitat Research & Restoration Division 60 p.

1991

Dey, D. B. 1991. Cle Elum Lake: productivity and fertilization potential. Report to Fisheries Enhancement Program 14 p.

1986

Damkaer, D. M., D. B. Dey. 1986a. Effects of water-borne pollutants on salmon-passage at John Day Dam, Columbia River (1982-1986). Coastal Zone and Estuarine Studies.

1981

Kendall, A. W., J. R. Dunn, R. J. Wolotira, J. H. Bowerman, A. C. Matarese, D. B. Dey. 1981. Zooplankton, including ichthyoplankton and decapod larvae of the Kodiak Shelf. NWAFC Processed Report, 80-8, 393 p.

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