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Publications - 2008
Bo, W., Jin, H., Kim, D., Liu, X., Lee, H., Pestieau, N., Yu, Y., Glimm, J.,
and Grove, J. Compressible multi species multi phase flow models.
Phys. Rev. E, submitted. BNL-77997-2007-JA.
Bo, W., Jin, H., Kim, D., Liu, X., Lee, H., Pestieau, N., Yu, Y., Glimm, J.,
and Grove, J. Comparison and validation of multi phase closure models. Computers and
Mathematics with Applications 56(5): 1291-1302 (2008). Stony Brook University
Preprint No. SUNYSB-AMS-07-02.
Ding, F., Layten, M., and Simmerling, C. Solution structure of HIV-1
protease flaps probed by comparison of molecular dynamics simulation
ensembles and EPR experiments. J. Am. Chem. Soc. 130(23): 7184-7185
(2008).
Du, J., Lu, T., and Samulyak, R. Algorithms for magnetohydrodynamics
of ablated materials. J. Nanoscience and Nanotechnology, accepted.
Gilman, Y., Allen, P.B., and Hybertsen, M.S. Density functional study
of adsorption of isocyanides on the gold (111) surface. J. Phys. Chem.
C 112(9): 3314-3320 (2008). BNL-77235-2006-JA.
Glimm, J. and Li, X.L. Recent progress in turbulent mixing. In
M. Legrand and M. Vandenboomgarde (eds.) Proc. 10th International
Workshop on the Physics of Compressible Turbulent Mixing, 17-21 July, Paris,
France, 2006. Stony Brook University Preprint No.
SUNYSB-AMS-06-13, in press.
Glimm, J., Ji, X., Li, J., Li, X., Zhang, P., Zhang, T., and Zheng, Y.
Transonic shock formation in a rarefaction Riemann problem for the 2-D
compressible Euler equations. SIAM J. Appl. Math., submitted.
BNL-80158-2008-JA. Stony Brook University Preprint No. SUNYSB-AMS-07-08.
Jin, H. and Glimm, J. Verification and validation for turbulent
mixing. Nonlinear Analysis 69(3): 874-879 (2008). BNL-78142-2007-JA.
Stony Brook University Preprint No. SUNYSB-AMS-07-04.
Kang, K.S., Davenport, J.W., Glimm, J., Keyes, D.E., and McGuigan, M.
Linear augmented Slater-type orbital method for free standing clusters.
J. Computational Chemistry, submitted.
Kocharian, A.N., Fernando, G.W., Palandage, K., and Davenport, J.W.
Charge and spin pairing instabilities in nanoclusters: Exact
calculations. Phys. Rev. B, submitted.
Lee, H., Jin, H., Yu, Y., and Glimm, J. On validation of turbulent
mixing simulations of Rayleigh-Taylor instability. Phys. Fluids 20(1):
012102 (2008). BNL-78141-2007-JA. Stony Brook University Preprint No.
SUNYSB-AMS-07-03.
Lim, H., Yu, Y., Glimm, J., Li, X., and Sharp, D.H. Chaos, transport,
and mesh convergence for fluid mixing. Acta Mathematicae Applicatae
Sinica, submitted. BNL-80124-2008-JA. Stony Brook University Preprint No.
SUNYSB-AMS-07-09. Los Alamos National Laboratory Preprint No.
LA-UR-08-0068.
Lim, H., Yu, Y., Jin, J., Kim, D., Lee, H., Glimm, J., Li, X., and Sharp,
D.H. Multi scale models for fluid mixing. Special Issue Computer
Methods in Applied Mechanics and Engineering,
in press. BNL-80125-2008-JA. Stony Brook University Preprint No. SUNYSB-AMS-07-05.
Lu, T., Xu, Z., Samulyak, R., Glimm, J., and Ji, X.M. Dynamic phase
boundaries for compressible fluids. SIAM J. on Scientific Computing 30(2): 895-915 (2008).
McGuigan, M. Toward the graphics Turing scale on a Blue Gene
supercomputer. Submitted to SC08, November 15-21, 2008, Austin,
TX. BNL-80138-2008-CP.
McGuigan, M., Davenport, J., and Glimm, J. Computational approach to finite
size and shape effects in iron nanomagnets. J. Magnetism and Magnetic
Materials 320 (3-4): 190-196 (2008). BNL-77485-2007-JA.
Parks, P., Lu, T., and Samulyak, R. Charging and rotation of pellet
ablation cloud. Phys. Rev. Letters, submitted.
BNL-72955-2007-JA.
Samulyak, R., Lu, T., Parks, P., Glimm, J., and Li, X. Simulation of
pellet ablation for Tokamak fueling with ITAPS front tracking. J.
Physics: Conference Series, submitted. BNL-81285-2008-JA.
Song, K., Hornak, V., de los Santos, C., Grollman, A., and Simmerling, C.
Molecular mechanics parameters for the FapydG DNA lesion. J.
Computational Chemistry 29(1): 17-23 (2008). BNL-76949-2006-JA.
Xu, Z.L., Lu, T., Samulyak, R., Glimm, M., and Ji, X.M. Dynamic phase
boundaries for compressible fluids. SIAM J. on Scientific Computing
30(2): 895-915 (2008). Stony Brook University Preprint No. SUNYSB-AMS-06-07.
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