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IMAGEJ archives – January 2007

Table of contents:

• "Interactive 3D Surface Plot" Plugin Update (3 messages)
• "Interactive 3D Surface Plot" Plugin Update (completed)
• 16-bit RGB (2 messages)
• 3D binary and connection
• <No subject> (3 messages)
• ? of compatability of camera with ImageJ software (4 messages)
• Analyze Particles constructor incomplete?
• analyze particles with problem of threhold
• Antwort: Extended Depth of Field (EDF) plugin with batch mode
• automated neurite tracing macro
• Basic ImageJ questions: getting started
• bit-depth for Analyze format (2 messages)
• blinking bar (3 messages)
• calling ImageJ from Perl (3 messages)
• Cannot paste from system clipboard (and other suggested clipboard improvements) (2 messages)
• Capturing analog monochrome video with ImageJ
• Changing movie frame colour in Image J
• Code to open image by pasting URL in ImageJ
• compile and run... (2 messages)
• conversion between MPEG-2 and AVI/TIFF (2 messages)
• Coordinate transformation or image warp (2 messages)
• Count foci/cell
• edge detection updated
• Excel Writer
• Extended Depth of Field (EDF) plugin with batch mode
• Fixes to PNM/PGM/... reader/writer (9 messages)
• FloatProcessor Conversion (2 messages)
• Fw: ? of compatability of camera with ImageJ software
• Fwd: Bug in OI Analysis Code
• Get windows titles (5 messages)
• Grid Generator macro
• Help on freeline ROIs
• Icons for Tools (2 messages)
• IJ Question: Area Calibration from a Second Picture (2 messages)
• IJ-macro: Selected values to 1D-array (2 messages)
• Image tagging
• ImageCanvas zoomIn / zoomOut (2 messages)
• ImageJ toolbar (3 messages)
• ImageStack serializable
• import file (2 messages)
• Import Perkin Elmer Ultraview Files
• importing image sequence (2 messages)
• Is there any central updated plugin and tool directory for ImageJ (2 messages)
• jpeg compressed tifs from Leica IM500 (11 messages)
• Large area error (2 messages)
• Learning Image J (3 messages)
• LG-3 External TTL Trigger Option in ImageJ?
• Macro - Installation (2 messages)
• macro listening to thread (6 messages)
• Macro problem (5 messages)
• macro to divide two summary results (5 messages)
• Macro: Processing Images in a Stack (2 messages)
• Masson's Trichrome plug-in
• MBF ImageJ
• means and histograms help!
• Memory leak (15 messages)
• memory limitation (2 messages)
• MIJ
• NetBeans project for ImageJ plugins development
• NeuronJ + Straighten Plugin (3 messages)
• New plugin for analyzing chemotactical or migration data
• no sub-pixel areas in measure-tool? (4 messages)
• on ImageJ (4 messages)
• open 10 bit binary image (2 messages)
• Overlay with Image5D (2 messages)
• pair correlation function (2 messages)
• PlotWindow Mouse moved (4 messages)
• pls, on ImagJ (2 messages)
• Plugin error (2 messages)
• polarization microscopy for cereal grain (2 messages)
• Portable ImageJ (11 messages)
• Problems to import of zvi data (Axio Vision Zeiss) (3 messages)
• Question on Watershed Algorithm (8 messages)
• question on where to find codes (3 messages)
• questions about the DICOM images imports
• R: use of imageJ for herbivory assessment
• Raw Image Stacks: Image Ordering/Reordering (7 messages)
• RE : Re: surface roughness calculation (2 messages)
• reading ".sc" file format from bio-rad geldoc (2 messages)
• Release of CamAcqJ: a plugin for QImaging Cameras
• remember windows position after restart (3 messages)
• Renaming files 1-99 (8 messages)
• ROI question (4 messages)
• Save to a project (4 messages)
• Saving Image with ROI "Show All" (2 messages)
• Search for Image restoration plugin.
• Segmentation troubleshooting (4 messages)
• Segmented Line Tool (3 messages)
• skeletonize - alternative method (4 messages)
• source code (2 messages)
• spatial frequency (2 messages)
• sperm head area (4 messages)
• Stack Shuffler Macro (2 messages)
• Stereology with Image J? (7 messages)
• Storing and combining freeline ROIs (2 messages)
• surface roughness calculation (5 messages)
• TextPanel.saveAs (2 messages)
• the old 3D Editing plugin for ImageJ
• Three dimensional US images
• Tiff inverting LUT
• Unique ResultsTable instance with clearing capabilities (4 messages)
• unsubscribing (4 messages)
• unsuscribe
• use of imageJ for herbivory assessment (4 messages)
• Using keyboard with plugin (3 messages)
• where can I find a theoretical PSF image of two-photon laser scanning microscopy
• Which colour CCD camera? (3 messages)

1. "Interactive 3D Surface Plot" Plugin Update
   • "Interactive 3D Surface Plot" Plugin Update (50 lines)
   • Re: "Interactive 3D Surface Plot" Plugin Update (59 lines)
   • Re: "Interactive 3D Surface Plot" Plugin Update (62 lines)

2. "Interactive 3D Surface Plot" Plugin Update (completed)
   • "Interactive 3D Surface Plot" Plugin Update (completed) (61 lines)

3. 16-bit RGB
   • 16-bit RGB (20 lines)
   • Re: 16-bit RGB (52 lines)

4. 3D binary and connection
   • 3D binary and connection (52 lines)

5. <No subject>
   • <No subject> (50 lines)
   • <No subject> (61 lines)
   • <No subject> (47 lines)

6. ? of compatability of camera with ImageJ software
   • Re: ? of compatability of camera with ImageJ software (140 lines)
   • Re: ? of compatability of camera with ImageJ software (147 lines)
   • Re: ? of compatability of camera with ImageJ software (175 lines)
   • Re: ? of compatability of camera with ImageJ software (196 lines)

7. Analyze Particles constructor incomplete?
   • Analyze Particles constructor incomplete? (60 lines)

8. analyze particles with problem of threhold
   • analyze particles with problem of threhold (74 lines)

9. Antwort: Extended Depth of Field (EDF) plugin with batch mode
   • Antwort: Extended Depth of Field (EDF) plugin with batch mode (115 lines)

10. automated neurite tracing macro
    • automated neurite tracing macro (91 lines)

11. Basic ImageJ questions: getting started
    • Basic ImageJ questions: getting started (45 lines)

12. bit-depth for Analyze format
    • bit-depth for Analyze format (43 lines)
    • Re: bit-depth for Analyze format (74 lines)

13. blinking bar
    • blinking bar (51 lines)
    • Re: blinking bar (60 lines)
    • Re: blinking bar (39 lines)

14. calling ImageJ from Perl
    • calling ImageJ from Perl (50 lines)
    • Re: calling ImageJ from Perl (78 lines)
    • Re: calling ImageJ from Perl (54 lines)

15. Cannot paste from system clipboard (and other suggested clipboard improvements)
    • Cannot paste from system clipboard (and other suggested clipboard improvements) (67 lines)
    • Re: Cannot paste from system clipboard (and other suggested clipboard improvements) (37 lines)

16. Capturing analog monochrome video with ImageJ
    • Capturing analog monochrome video with ImageJ (54 lines)

17. Changing movie frame colour in Image J
    • Changing movie frame colour in Image J (53 lines)

18. Code to open image by pasting URL in ImageJ
    • Code to open image by pasting URL in ImageJ (133 lines)

19. compile and run...
    • compile and run... (45 lines)
    • Re: compile and run... (62 lines)

20. conversion between MPEG-2 and AVI/TIFF
    • conversion between MPEG-2 and AVI/TIFF (40 lines)
    • Re: conversion between MPEG-2 and AVI/TIFF (54 lines)

21. Coordinate transformation or image warp
    • Coordinate transformation or image warp (52 lines)
    • Re: Coordinate transformation or image warp (59 lines)

22. Count foci/cell
    • Count foci/cell (49 lines)

23. edge detection updated
    • edge detection updated (51 lines)

24. Excel Writer
    • Excel Writer (65 lines)

25. Extended Depth of Field (EDF) plugin with batch mode
    • Extended Depth of Field (EDF) plugin with batch mode (59 lines)

26. Fixes to PNM/PGM/... reader/writer
    • Fixes to PNM/PGM/... reader/writer (615 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (57 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (69 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (69 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (117 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (66 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (124 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (87 lines)
    • Re: Fixes to PNM/PGM/... reader/writer (58 lines)

27. FloatProcessor Conversion
    • FloatProcessor Conversion (41 lines)
    • Re: FloatProcessor Conversion (72 lines)

28. Fw: ? of compatability of camera with ImageJ software
    • Fw: ? of compatability of camera with ImageJ software (264 lines)

29. Fwd: Bug in OI Analysis Code
    • Fwd: Bug in OI Analysis Code (108 lines)

30. Get windows titles
    • Get windows titles (48 lines)
    • Re: Get windows titles (54 lines)
    • Re: Get windows titles (78 lines)
    • Re: Get windows titles (67 lines)
    • Re: Get windows titles (97 lines)

31. Grid Generator macro
    • Grid Generator macro (67 lines)

32. Help on freeline ROIs
    • Help on freeline ROIs (62 lines)

33. Icons for Tools
    • Icons for Tools (51 lines)
    • Re: Icons for Tools (53 lines)

34. IJ Question: Area Calibration from a Second Picture
    • IJ Question: Area Calibration from a Second Picture (51 lines)
    • Re: IJ Question: Area Calibration from a Second Picture (58 lines)

35. IJ-macro: Selected values to 1D-array
    • IJ-macro: Selected values to 1D-array (52 lines)
    • Re: IJ-macro: Selected values to 1D-array (69 lines)

36. Image tagging
    • Image tagging (49 lines)

37. ImageCanvas zoomIn / zoomOut
    • ImageCanvas zoomIn / zoomOut (58 lines)
    • Re: ImageCanvas zoomIn / zoomOut (68 lines)

38. ImageJ toolbar
    • ImageJ toolbar (41 lines)
    • Re: ImageJ toolbar (49 lines)
    • Re: ImageJ toolbar (51 lines)

39. ImageStack serializable
    • ImageStack serializable (57 lines)

40. import file
    • Re: import file (44 lines)
    • Re: import file (40 lines)

41. Import Perkin Elmer Ultraview Files
    • Import Perkin Elmer Ultraview Files (81 lines)

42. importing image sequence
    • importing image sequence (36 lines)
    • Re: importing image sequence (47 lines)

43. Is there any central updated plugin and tool directory for ImageJ
    • Is there any central updated plugin and tool directory for ImageJ (71 lines)
    • Re: Is there any central updated plugin and tool directory for ImageJ (55 lines)

44. jpeg compressed tifs from Leica IM500
    • jpeg compressed tifs from Leica IM500 (36 lines)
    • Re: jpeg compressed tifs from Leica IM500 (48 lines)
    • Re: jpeg compressed tifs from Leica IM500 (73 lines)
    • Re: jpeg compressed tifs from Leica IM500 (41 lines)
    • Re: jpeg compressed tifs from Leica IM500 (46 lines)
    • Re: jpeg compressed tifs from Leica IM500 (43 lines)
    • Re: jpeg compressed tifs from Leica IM500 (79 lines)
    • Re: jpeg compressed tifs from Leica IM500 (91 lines)
    • Re: jpeg compressed tifs from Leica IM500 (116 lines)
    • Re: jpeg compressed tifs from Leica IM500 (58 lines)
    • Re: jpeg compressed tifs from Leica IM500 (122 lines)

45. Large area error
    • Large area error (67 lines)
    • Re: Large area error (46 lines)

46. Learning Image J
    • Learning Image J (49 lines)
    • Re: Learning Image J (90 lines)
    • Re: Learning Image J (76 lines)

47. LG-3 External TTL Trigger Option in ImageJ?
    • LG-3 External TTL Trigger Option in ImageJ? (48 lines)

48. Macro - Installation
    • Macro - Installation (44 lines)
    • Re: Macro - Installation (34 lines)

49. macro listening to thread
    • macro listening to thread (58 lines)
    • Re: macro listening to thread (55 lines)
    • Re: macro listening to thread (87 lines)
    • Re: macro listening to thread (53 lines)
    • Re: macro listening to thread (56 lines)
    • Re: macro listening to thread (60 lines)

50. Macro problem
    • Macro problem (51 lines)
    • Re: Macro problem (66 lines)
    • Re: Macro problem (89 lines)
    • Re: Macro problem (74 lines)
    • Re: Macro problem (47 lines)

51. macro to divide two summary results
    • macro to divide two summary results (48 lines)
    • Re: macro to divide two summary results (59 lines)
    • Re: macro to divide two summary results (86 lines)
    • Re: macro to divide two summary results (64 lines)
    • Re: macro to divide two summary results (81 lines)

52. Macro: Processing Images in a Stack
    • Macro: Processing Images in a Stack (44 lines)
    • Re: Macro: Processing Images in a Stack (55 lines)

53. Masson's Trichrome plug-in
    • Masson's Trichrome plug-in (43 lines)

54. MBF ImageJ
    • MBF ImageJ (56 lines)

55. means and histograms help!
    • means and histograms help! (52 lines)

56. Memory leak
    • Memory leak (58 lines)
    • Re: Memory leak (52 lines)
    • Re: Memory leak (81 lines)
    • Re: Memory leak (87 lines)
    • Re: Memory leak (125 lines)
    • Re: Memory leak (70 lines)
    • Re: Memory leak (72 lines)
    • Re: Memory leak (69 lines)
    • Re: Memory leak (89 lines)
    • Re: Memory leak (67 lines)
    • Re: Memory leak (84 lines)
    • Re: Memory leak (56 lines)
    • Re: Memory leak (112 lines)
    • Re: Memory leak (76 lines)
    • Re: Memory leak (94 lines)

57. memory limitation
    • memory limitation (35 lines)
    • Re: memory limitation (79 lines)

58. MIJ
    • MIJ (68 lines)

59. NetBeans project for ImageJ plugins development
    • NetBeans project for ImageJ plugins development (42 lines)

60. NeuronJ + Straighten Plugin
    • NeuronJ + Straighten Plugin (68 lines)
    • Re: NeuronJ + Straighten Plugin (100 lines)
    • Re: NeuronJ + Straighten Plugin (102 lines)

61. New plugin for analyzing chemotactical or migration data
    • New plugin for analyzing chemotactical or migration data (41 lines)

62. no sub-pixel areas in measure-tool?
    • no sub-pixel areas in measure-tool? (26 lines)
    • Re: no sub-pixel areas in measure-tool? (54 lines)
    • Re: no sub-pixel areas in measure-tool? (22 lines)
    • Re: no sub-pixel areas in measure-tool? (49 lines)

63. on ImageJ
    • on ImageJ (38 lines)
    • Re: on ImageJ (50 lines)
    • on ImageJ (38 lines)
    • Re: on ImageJ (59 lines)

64. open 10 bit binary image
    • open 10 bit binary image (35 lines)
    • Re: open 10 bit binary image (56 lines)

65. Overlay with Image5D
    • Overlay with Image5D (72 lines)
    • Re: Overlay with Image5D (91 lines)

66. pair correlation function
    • pair correlation function (49 lines)
    • Re: pair correlation function (56 lines)

67. PlotWindow Mouse moved
    • PlotWindow Mouse moved (35 lines)
    • Re: PlotWindow Mouse moved (35 lines)
    • Re: PlotWindow Mouse moved (53 lines)
    • Re: PlotWindow Mouse moved (58 lines)

68. pls, on ImagJ
    • pls, on ImagJ (42 lines)
    • Re: pls, on ImagJ (87 lines)

69. Plugin error
    • Plugin error (48 lines)
    • Re: Plugin error (58 lines)

70. polarization microscopy for cereal grain
    • polarization microscopy for cereal grain (64 lines)
    • Re: polarization microscopy for cereal grain (104 lines)

71. Portable ImageJ
    • Portable ImageJ (63 lines)
    • Re: Portable ImageJ (66 lines)
    • Re: Portable ImageJ (79 lines)
    • Re: Portable ImageJ (75 lines)
    • Re: Portable ImageJ (86 lines)
    • Re: Portable ImageJ (46 lines)
    • Re: Portable ImageJ (53 lines)
    • Re: Portable ImageJ (61 lines)
    • Re: Portable ImageJ (47 lines)
    • Re: Portable ImageJ (64 lines)
    • Re: Portable ImageJ (73 lines)

72. Problems to import of zvi data (Axio Vision Zeiss)
    • Problems to import of zvi data (Axio Vision Zeiss) (54 lines)
    • Re: Problems to import of zvi data (Axio Vision Zeiss) (71 lines)
    • Re: Problems to import of zvi data (Axio Vision Zeiss) (73 lines)

73. Question on Watershed Algorithm
    • Question on Watershed Algorithm (47 lines)
    • Re: Question on Watershed Algorithm (75 lines)
    • Re: Question on Watershed Algorithm (56 lines)
    • Re: Question on Watershed Algorithm (99 lines)
    • Re: Question on Watershed Algorithm (80 lines)
    • Re: Question on Watershed Algorithm (80 lines)
    • Re: Question on Watershed Algorithm (116 lines)
    • Re: Question on Watershed Algorithm (138 lines)

74. question on where to find codes
    • question on where to find codes (43 lines)
    • Re: question on where to find codes (63 lines)
    • Re: question on where to find codes (82 lines)

75. questions about the DICOM images imports
    • questions about the DICOM images imports (46 lines)

76. R: use of imageJ for herbivory assessment
    • R: use of imageJ for herbivory assessment (74 lines)

77. Raw Image Stacks: Image Ordering/Reordering
    • Raw Image Stacks: Image Ordering/Reordering (40 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (46 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (78 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (61 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (49 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (60 lines)
    • Re: Raw Image Stacks: Image Ordering/Reordering (83 lines)

78. RE : Re: surface roughness calculation
    • RE : Re: surface roughness calculation (63 lines)
    • Re: RE : Re: surface roughness calculation (47 lines)

79. reading ".sc" file format from bio-rad geldoc
    • reading ".sc" file format from bio-rad geldoc (58 lines)
    • Re: reading ".sc" file format from bio-rad geldoc (66 lines)

80. Release of CamAcqJ: a plugin for QImaging Cameras
    • Release of CamAcqJ: a plugin for QImaging Cameras (54 lines)

81. remember windows position after restart
    • remember windows position after restart (25 lines)
    • Re: remember windows position after restart (51 lines)
    • Re: remember windows position after restart (67 lines)

82. Renaming files 1-99
    • Re: Renaming files 1-99 (91 lines)
    • Re: Renaming files 1-99 (127 lines)
    • Re: Renaming files 1-99 (79 lines)
    • Re: Renaming files 1-99 (110 lines)
    • Re: Renaming files 1-99 (130 lines)
    • Re: Renaming files 1-99 (78 lines)
    • Re: Renaming files 1-99 (136 lines)
    • Re: Renaming files 1-99 (236 lines)

83. ROI question
    • ROI question (91 lines)
    • Re: ROI question (93 lines)
    • Re: ROI question (122 lines)
    • Re: ROI question (133 lines)

84. Save to a project
    • Save to a project (49 lines)
    • Re: Save to a project (49 lines)
    • Re: Save to a project (71 lines)
    • Re: Save to a project (105 lines)

85. Saving Image with ROI "Show All"
    • Saving Image with ROI "Show All" (48 lines)
    • Re: Saving Image with ROI "Show All" (38 lines)

86. Search for Image restoration plugin.
    • Search for Image restoration plugin. (46 lines)

87. Segmentation troubleshooting
    • Segmentation troubleshooting (179 lines)
    • Re: Segmentation troubleshooting (69 lines)
    • Re: Segmentation troubleshooting (102 lines)
    • Re: Segmentation troubleshooting (122 lines)

88. Segmented Line Tool
    • Segmented Line Tool (65 lines)
    • Re: Segmented Line Tool (81 lines)
    • Re: Segmented Line Tool (98 lines)

89. skeletonize - alternative method
    • skeletonize - alternative method (45 lines)
    • Re: skeletonize - alternative method (105 lines)
    • Re: skeletonize - alternative method (60 lines)
    • Re: skeletonize - alternative method (77 lines)

90. source code
    • source code (33 lines)
    • Re: source code (50 lines)

91. spatial frequency
    • spatial frequency (40 lines)
    • Re: spatial frequency (65 lines)

92. sperm head area
    • sperm head area (22 lines)
    • Re: sperm head area (66 lines)
    • Re: sperm head area (57 lines)
    • Re: sperm head area (68 lines)

93. Stack Shuffler Macro
    • Stack Shuffler Macro (92 lines)
    • Re: Stack Shuffler Macro (97 lines)

94. Stereology with Image J?
    • Re: Stereology with Image J? (90 lines)
    • Re: Stereology with Image J? (59 lines)
    • Re: Stereology with Image J? (112 lines)
    • Re: Stereology with Image J? (53 lines)
    • Re: Stereology with Image J? (99 lines)
    • Re: Stereology with Image J? (47 lines)
    • Re: Stereology with Image J? (85 lines)

95. Storing and combining freeline ROIs
    • Storing and combining freeline ROIs (45 lines)
    • Re: Storing and combining freeline ROIs (60 lines)

96. surface roughness calculation
    • surface roughness calculation (43 lines)
    • surface roughness calculation (58 lines)
    • Re: surface roughness calculation (89 lines)
    • Re: surface roughness calculation (57 lines)
    • Re: surface roughness calculation (54 lines)

97. TextPanel.saveAs
    • TextPanel.saveAs (29 lines)
    • Re: TextPanel.saveAs (50 lines)

98. the old 3D Editing plugin for ImageJ
    • the old 3D Editing plugin for ImageJ (51 lines)

99. Three dimensional US images
    • Three dimensional US images (50 lines)

100. Tiff inverting LUT
     • Tiff inverting LUT (41 lines)

101. Unique ResultsTable instance with clearing capabilities
     • Unique ResultsTable instance with clearing capabilities (58 lines)
     • Re: Unique ResultsTable instance with clearing capabilities (81 lines)
     • Re: Unique ResultsTable instance with clearing capabilities (90 lines)
     • Re: Unique ResultsTable instance with clearing capabilities (71 lines)

102. unsubscribing
     • unsubscribing (35 lines)
     • Re: unsubscribing (52 lines)
     • Re: unsubscribing (94 lines)
     • Re: unsubscribing (109 lines)

103. unsuscribe
     • unsuscribe (36 lines)

104. use of imageJ for herbivory assessment
     • use of imageJ for herbivory assessment (55 lines)
     • Re: use of imageJ for herbivory assessment (72 lines)
     • Re: use of imageJ for herbivory assessment (71 lines)
     • Re: use of imageJ for herbivory assessment (73 lines)

105. Using keyboard with plugin
     • Using keyboard with plugin (67 lines)
     • Re: Using keyboard with plugin (71 lines)
     • Re: Using keyboard with plugin (67 lines)

106. where can I find a theoretical PSF image of two-photon laser scanning microscopy
     • where can I find a theoretical PSF image of two-photon laser scanning microscopy (46 lines)

107. Which colour CCD camera?
     • Which colour CCD camera? (46 lines)
     • Re: Which colour CCD camera? (96 lines)
     • Re: Which colour CCD camera? (69 lines)

Center for Information Technology National Institutes of Health Bethesda, Maryland 20892 301 594 6248 (v) 301 496 8294 (TDD) Comments and Assistance Accessibility