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IMAGEJ archives – July 2005

Table of contents:

• "getStatistics" with line selections (2 messages)
• "Pie" Segmentation (3 messages)
• <No subject> (10 messages)
• Analyse particles (3 messages)
• AND function (9 messages)
• Apply "Substract background" to all files in subfolders (9 messages)
• Area Calculator, ROI Manager and naming measurements (2 messages)
• Auto Contrast set (2 messages)
• Auto-launching macros (was Re: startup) (3 messages)
• automatic tracing of outlines? (2 messages)
• Betr.: Re: Keyboard Shortcuts to Macros
• Bolus tracking (2 messages)
• Brightness/Contrast variation (2 messages)
• calculating the surface of a 3D object in an Image J stack
• calling macros from plugins (3 messages)
• can imagej read the files of autocad?
• CCD camera (high speed)
• center of mass of two dimensional scatterplot
• connected threshold grower issue
• copying images from a stack opened in Image J to Adobe photoshop (3 messages)
• correction of parallax (or positional discrepancy) (4 messages)
• Denoising (2 messages)
• Dialog file filter problems (2 messages)
• Digitizing a profile (2 messages)
• Drawing rays (4 messages)
• Exception when opening LZW-TIFFs as stack (2 messages)
• FFT questions... (2 messages)
• FFT units question
• Frequency measurement
• Getting particle data out of ParticleAnalyser
• Groupware question (3 messages)
• Help (3 messages)
• help imaging barnacles (5 messages)
• HELP: Plugin and Macro Development Question (2 messages)
• Help: use of makeOval (3 messages)
• Histogram of Analyze Particles Results (4 messages)
• how can I map pixel to sceen coordinates?
• How to calibrate images with 2 different curves
• How to know the file name? (2 messages)
• image subtract/difference (2 messages)
• Image Thresholding (2 messages)
• ImageJ command Dialog.create
• ImageJ/FracLac
• ImagePlus into postgresql (7 messages)
• Inclinated ellipse (3 messages)
• input problem (2 messages)
• isodose overlay
• java debug tool (3 messages)
• JPEG2000?
• Keyboard Shortcuts to Macros (2 messages)
• Label particles by shape characteristics (3 messages)
• Library (2 messages)
• List all pixel coordinates in ROI
• looking for method to convert rectangle to any set of given 4 corners (2 messages)
• LSM Reader Pluggin (3 messages)
• Making password fields in GenericDialogs (2 messages)
• Median of an array (4 messages)
• minor projection measurements? (3 messages)
• more on slow file open from fileservers
• Morphological image display and processing (3 messages)
• Need help with analyizing images (2 messages)
• New stack slice comments vers. 134q (2 messages)
• Non-uniform illumination and noise reduction
• Novice in ImageJ
• Opening .zip files (4 messages)
• Opening of Macros
• options for ParticleAnalyser
• OSX 10.4 (Tiger) memory problems
• ParticleAnalyzer question
• PET image units in DICOM
• Pie Continued
• Plug-in to auto-align images? (2 messages)
• Plugin for segmenting images?
• plugins (5 messages)
• Plugins update
• printing an array on one line (3 messages)
• Problem with area measurement (4 messages)
• processing light and dark areas (3 messages)
• Properties settings
• Q: Plug-in to auto-align images? (2 messages)
• Q: runaway memory consumption? (3 messages)
• Question on Automation of Opening/Saving Images
• Question on Dialog Boxes
• R:results collection
• remove jpg artifacts
• results collection (3 messages)
• results collection, (also info for brent wood) (2 messages)
• RGB gray merge
• RGB Profiler
• Saving 32 bit tiff with IJ 1.34s
• servlet with imageJ (4 messages)
• Soil cracking Images - Processing and Analysis (2 messages)
• Solution to a problem calling Stack Maker from a macro
• stack alignment / registration (3 messages)
• Stack query (3 messages)
• startup (3 messages)
• Sum Stacks question (7 messages)
• Sum Stacks question and arrow plug in
• Sync Windows (3 messages)
• thresholding after connected threshold grower
• Tool Macro
• Total Particle Count from ParticleAnalyzer plugin (2 messages)
• Training on Image analysis
• Trouble with plugin / image backgrounds (3 messages)
• vecorizing an image (3 messages)
• volume j in osx

1. "getStatistics" with line selections
   • "getStatistics" with line selections (54 lines)
   • Re: "getStatistics" with line selections (47 lines)

2. "Pie" Segmentation
   • "Pie" Segmentation (61 lines)
   • Re: "Pie" Segmentation (81 lines)
   • Re: "Pie" Segmentation (51 lines)

3. <No subject>
   • <No subject> (49 lines)
   • <No subject> (34 lines)
   • <No subject> (40 lines)
   • <No subject> (65 lines)
   • <No subject> (77 lines)
   • <No subject> (95 lines)
   • <No subject> (72 lines)
   • <No subject> (44 lines)
   • <No subject> (40 lines)
   • <No subject> (47 lines)

4. Analyse particles
   • Analyse particles (46 lines)
   • Re: Analyse particles (45 lines)
   • Re: Analyse particles (54 lines)

5. AND function
   • AND function (63 lines)
   • Re: AND function (72 lines)
   • Re: AND function (85 lines)
   • Re: AND function (46 lines)
   • Re: AND function (57 lines)
   • Re: AND function (82 lines)
   • Re: AND function (40 lines)
   • Re: AND function (61 lines)
   • Re: AND function (68 lines)

6. Apply "Substract background" to all files in subfolders
   • Apply "Substract background" to all files in subfolders (36 lines)
   • Re: Apply "Substract background" to all files in subfolders (84 lines)
   • Re: Apply "Substract background" to all files in subfolders (37 lines)
   • Re: Apply "Substract background" to all files in subfolders (15 lines)
   • Re: Apply "Substract background" to all files in subfolders (64 lines)
   • Re: Apply "Substract background" to all files in subfolders (23 lines)
   • Re: Apply "Substract background" to all files in subfolders (48 lines)
   • Re: Apply "Substract background" to all files in subfolders (63 lines)
   • Re: Apply "Substract background" to all files in subfolders (50 lines)

7. Area Calculator, ROI Manager and naming measurements
   • Area Calculator, ROI Manager and naming measurements (56 lines)
   • Re: Area Calculator, ROI Manager and naming measurements (47 lines)

8. Auto Contrast set
   • Auto Contrast set (47 lines)
   • Re: Auto Contrast set (54 lines)

9. Auto-launching macros (was Re: startup)
   • Auto-launching macros (was Re: startup) (57 lines)
   • Re: Auto-launching macros (was Re: startup) (50 lines)
   • Re: Auto-launching macros (was Re: startup) (53 lines)

10. automatic tracing of outlines?
    • automatic tracing of outlines? (57 lines)
    • Re: automatic tracing of outlines? (34 lines)

11. Betr.: Re: Keyboard Shortcuts to Macros
    • Betr.: Re: Keyboard Shortcuts to Macros (72 lines)

12. Bolus tracking
    • Bolus tracking (41 lines)
    • Re: Bolus tracking (78 lines)

13. Brightness/Contrast variation
    • Brightness/Contrast variation (39 lines)
    • Re: Brightness/Contrast variation (66 lines)

14. calculating the surface of a 3D object in an Image J stack
    • calculating the surface of a 3D object in an Image J stack (40 lines)

15. calling macros from plugins
    • calling macros from plugins (37 lines)
    • Re: calling macros from plugins (63 lines)
    • Re: calling macros from plugins (44 lines)

16. can imagej read the files of autocad?
    • can imagej read the files of autocad? (54 lines)

17. CCD camera (high speed)
    • Re: CCD camera (high speed) (86 lines)

18. center of mass of two dimensional scatterplot
    • center of mass of two dimensional scatterplot (52 lines)

19. connected threshold grower issue
    • connected threshold grower issue (48 lines)

20. copying images from a stack opened in Image J to Adobe photoshop
    • copying images from a stack opened in Image J to Adobe photoshop (59 lines)
    • Re: copying images from a stack opened in Image J to Adobe photoshop (92 lines)
    • Re: copying images from a stack opened in Image J to Adobe photoshop (124 lines)

21. correction of parallax (or positional discrepancy)
    • correction of parallax (or positional discrepancy) (53 lines)
    • Re: correction of parallax (or positional discrepancy) (90 lines)
    • Re: correction of parallax (or positional discrepancy) (98 lines)
    • Re: correction of parallax (or positional discrepancy) (102 lines)

22. Denoising
    • Denoising (45 lines)
    • Re: Denoising (127 lines)

23. Dialog file filter problems
    • Re: Dialog file filter problems (58 lines)
    • Re: Dialog file filter problems (56 lines)

24. Digitizing a profile
    • Digitizing a profile (58 lines)
    • Re: Digitizing a profile (69 lines)

25. Drawing rays
    • Drawing rays (84 lines)
    • Re: Drawing rays (38 lines)
    • Re: Drawing rays (57 lines)
    • Re: Drawing rays (61 lines)

26. Exception when opening LZW-TIFFs as stack
    • Exception when opening LZW-TIFFs as stack (50 lines)
    • Re: Exception when opening LZW-TIFFs as stack (52 lines)

27. FFT questions...
    • FFT questions... (92 lines)
    • Re: FFT questions... (132 lines)

28. FFT units question
    • FFT units question (62 lines)

29. Frequency measurement
    • Frequency measurement (52 lines)

30. Getting particle data out of ParticleAnalyser
    • Getting particle data out of ParticleAnalyser (46 lines)

31. Groupware question
    • Groupware question (51 lines)
    • Re: Groupware question (72 lines)
    • Groupware question (63 lines)

32. Help
    • Help (38 lines)
    • Re: Help (59 lines)
    • Re: Help (87 lines)

33. help imaging barnacles
    • help imaging barnacles (66 lines)
    • Re: help imaging barnacles (73 lines)
    • Re: help imaging barnacles (102 lines)
    • Re: help imaging barnacles (129 lines)
    • Re: help imaging barnacles (102 lines)

34. HELP: Plugin and Macro Development Question
    • HELP: Plugin and Macro Development Question (100 lines)
    • Re: HELP: Plugin and Macro Development Question (84 lines)

35. Help: use of makeOval
    • Help: use of makeOval (100 lines)
    • Re: Help: use of makeOval (115 lines)
    • Re: Help: use of makeOval (47 lines)

36. Histogram of Analyze Particles Results
    • Histogram of Analyze Particles Results (47 lines)
    • Re: Histogram of Analyze Particles Results (72 lines)
    • Re: Histogram of Analyze Particles Results (94 lines)
    • Re: Histogram of Analyze Particles Results (55 lines)

37. how can I map pixel to sceen coordinates?
    • how can I map pixel to sceen coordinates? (54 lines)

38. How to calibrate images with 2 different curves
    • How to calibrate images with 2 different curves (27 lines)

39. How to know the file name?
    • How to know the file name? (45 lines)
    • Re: How to know the file name? (63 lines)

40. image subtract/difference
    • image subtract/difference (56 lines)
    • Re: image subtract/difference (45 lines)

41. Image Thresholding
    • Re: Image Thresholding (47 lines)
    • Re: Image Thresholding (60 lines)

42. ImageJ command Dialog.create
    • ImageJ command Dialog.create (30 lines)

43. ImageJ/FracLac
    • Re: ImageJ/FracLac (127 lines)

44. ImagePlus into postgresql
    • ImagePlus into postgresql (88 lines)
    • Re: ImagePlus into postgresql (130 lines)
    • Re: ImagePlus into postgresql (99 lines)
    • Re: ImagePlus into postgresql (59 lines)
    • Re: ImagePlus into postgresql (38 lines)
    • Re: ImagePlus into postgresql (76 lines)
    • Re: ImagePlus into postgresql (63 lines)

45. Inclinated ellipse
    • Inclinated ellipse (38 lines)
    • Re: Inclinated ellipse (40 lines)
    • Re: Inclinated ellipse (37 lines)

46. input problem
    • input problem (73 lines)
    • Re: input problem (88 lines)

47. isodose overlay
    • isodose overlay (52 lines)

48. java debug tool
    • Re: java debug tool (68 lines)
    • Re: java debug tool (60 lines)
    • Re: java debug tool (73 lines)

49. JPEG2000?
    • JPEG2000? (43 lines)

50. Keyboard Shortcuts to Macros
    • Keyboard Shortcuts to Macros (29 lines)
    • Re: Keyboard Shortcuts to Macros (34 lines)

51. Label particles by shape characteristics
    • Label particles by shape characteristics (21 lines)
    • Re: Label particles by shape characteristics (57 lines)
    • Re: Label particles by shape characteristics (49 lines)

52. Library
    • Library (52 lines)
    • Re: Library (33 lines)

53. List all pixel coordinates in ROI
    • List all pixel coordinates in ROI (20 lines)

54. looking for method to convert rectangle to any set of given 4 corners
    • looking for method to convert rectangle to any set of given 4 corners (67 lines)
    • Re: looking for method to convert rectangle to any set of given 4 corners (74 lines)

55. LSM Reader Pluggin
    • LSM Reader Pluggin (106 lines)
    • Re: LSM Reader Pluggin (52 lines)
    • Re: LSM Reader Pluggin (60 lines)

56. Making password fields in GenericDialogs
    • Making password fields in GenericDialogs (71 lines)
    • Re: Making password fields in GenericDialogs (69 lines)

57. Median of an array
    • Median of an array (47 lines)
    • Re: Median of an array (51 lines)
    • Re: Median of an array (43 lines)
    • Re: Median of an array (68 lines)

58. minor projection measurements?
    • minor projection measurements? (46 lines)
    • Re: minor projection measurements? (62 lines)
    • Re: minor projection measurements? (126 lines)

59. more on slow file open from fileservers
    • more on slow file open from fileservers (59 lines)

60. Morphological image display and processing
    • Morphological image display and processing (43 lines)
    • Re: Morphological image display and processing (56 lines)
    • Re: Morphological image display and processing (86 lines)

61. Need help with analyizing images
    • Need help with analyizing images (48 lines)
    • Re: Need help with analyizing images (76 lines)

62. New stack slice comments vers. 134q
    • New stack slice comments vers. 134q (37 lines)
    • Re: New stack slice comments vers. 134q (44 lines)

63. Non-uniform illumination and noise reduction
    • Non-uniform illumination and noise reduction (55 lines)

64. Novice in ImageJ
    • Novice in ImageJ (26 lines)

65. Opening .zip files
    • Opening .zip files (34 lines)
    • Re: Opening .zip files (49 lines)
    • Re: Opening .zip files (51 lines)
    • Re: Opening .zip files (56 lines)

66. Opening of Macros
    • Opening of Macros (31 lines)

67. options for ParticleAnalyser
    • options for ParticleAnalyser (73 lines)

68. OSX 10.4 (Tiger) memory problems
    • OSX 10.4 (Tiger) memory problems (45 lines)

69. ParticleAnalyzer question
    • ParticleAnalyzer question (53 lines)

70. PET image units in DICOM
    • Re: PET image units in DICOM (64 lines)

71. Pie Continued
    • Pie Continued (65 lines)

72. Plug-in to auto-align images?
    • Re: Plug-in to auto-align images? (63 lines)
    • Re: Plug-in to auto-align images? (90 lines)

73. Plugin for segmenting images?
    • Plugin for segmenting images? (41 lines)

74. plugins
    • Re: plugins (48 lines)
    • Re: plugins (40 lines)
    • Re: plugins (72 lines)
    • Re: plugins (45 lines)
    • Re: plugins (61 lines)

75. Plugins update
    • Plugins update (50 lines)

76. printing an array on one line
    • printing an array on one line (48 lines)
    • Re: printing an array on one line (44 lines)
    • Re: printing an array on one line (77 lines)

77. Problem with area measurement
    • Problem with area measurement (53 lines)
    • Re: Problem with area measurement (58 lines)
    • Re: Problem with area measurement (49 lines)
    • Re: Problem with area measurement (36 lines)

78. processing light and dark areas
    • processing light and dark areas (26 lines)
    • Re: processing light and dark areas (69 lines)
    • Re: processing light and dark areas (31 lines)

79. Properties settings
    • Properties settings (54 lines)

80. Q: Plug-in to auto-align images?
    • Q: Plug-in to auto-align images? (56 lines)
    • Re: Q: Plug-in to auto-align images? (65 lines)

81. Q: runaway memory consumption?
    • Q: runaway memory consumption? (34 lines)
    • Re: Q: runaway memory consumption? (53 lines)
    • Re: Q: runaway memory consumption? (86 lines)

82. Question on Automation of Opening/Saving Images
    • Re: Question on Automation of Opening/Saving Images (88 lines)

83. Question on Dialog Boxes
    • Question on Dialog Boxes (29 lines)

84. R:results collection
    • R:results collection (48 lines)

85. remove jpg artifacts
    • remove jpg artifacts (38 lines)

86. results collection
    • results collection (54 lines)
    • Re: results collection (69 lines)
    • Re: results collection (57 lines)

87. results collection, (also info for brent wood)
    • Re: results collection, (also info for brent wood) (82 lines)
    • Re: results collection, (also info for brent wood) (105 lines)

88. RGB gray merge
    • RGB gray merge (61 lines)

89. RGB Profiler
    • RGB Profiler (53 lines)

90. Saving 32 bit tiff with IJ 1.34s
    • Saving 32 bit tiff with IJ 1.34s (64 lines)

91. servlet with imageJ
    • servlet with imageJ (50 lines)
    • Re: servlet with imageJ (67 lines)
    • Re: servlet with imageJ (113 lines)
    • Re: servlet with imageJ (69 lines)

92. Soil cracking Images - Processing and Analysis
    • Soil cracking Images - Processing and Analysis (91 lines)
    • Soil cracking Images - Processing and Analysis (116 lines)

93. Solution to a problem calling Stack Maker from a macro
    • Solution to a problem calling Stack Maker from a macro (80 lines)

94. stack alignment / registration
    • stack alignment / registration (51 lines)
    • Re: stack alignment / registration (67 lines)
    • Re: stack alignment / registration (75 lines)

95. Stack query
    • Stack query (55 lines)
    • Re: Stack query (66 lines)
    • Re: Stack query (47 lines)

96. startup
    • startup (54 lines)
    • Re: startup (51 lines)
    • Re: startup (76 lines)

97. Sum Stacks question
    • Sum Stacks question (47 lines)
    • Re: Sum Stacks question (65 lines)
    • Re: Sum Stacks question (85 lines)
    • Re: Sum Stacks question (40 lines)
    • Re: Sum Stacks question (106 lines)
    • Re: Sum Stacks question (37 lines)
    • Re: Sum Stacks question (53 lines)

98. Sum Stacks question and arrow plug in
    • Sum Stacks question and arrow plug in (56 lines)

99. Sync Windows
    • Sync Windows (44 lines)
    • Re: Sync Windows (66 lines)
    • Re: Sync Windows (67 lines)

100. thresholding after connected threshold grower
     • thresholding after connected threshold grower (53 lines)

101. Tool Macro
     • Tool Macro (60 lines)

102. Total Particle Count from ParticleAnalyzer plugin
     • Re: Total Particle Count from ParticleAnalyzer plugin (47 lines)
     • Re: Total Particle Count from ParticleAnalyzer plugin (62 lines)

103. Training on Image analysis
     • Training on Image analysis (50 lines)

104. Trouble with plugin / image backgrounds
     • Trouble with plugin / image backgrounds (62 lines)
     • Re: Trouble with plugin / image backgrounds (76 lines)
     • Re: Trouble with plugin / image backgrounds (95 lines)

105. vecorizing an image
     • vecorizing an image (38 lines)
     • Re: vecorizing an image (71 lines)
     • Re: vecorizing an image (83 lines)

106. volume j in osx
     • Re: volume j in osx (63 lines)

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