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IMAGEJ archives – July 2004

Table of contents:

• <No subject> (10 messages)
• A suggestion/question
• Actions on every windows
• Adding buttons to default ImageJ panels (2 messages)
• Adding to default ImageJ menu
• align images
• alignment
• analysis of data. (4 messages)
• Annoying automatic macro
• Antwort: Re: problem: Import Bruker MRI files (2 messages)
• Any copyrights on the images (2 messages)
• applet crashing (2 messages)
• Appropriate for evaluation of Thin LayerChromatopgraphy ?
• Automatic adding ROIs to Multi-Measure (4 messages)
• Automatic Images Comparison (2 messages)
• AVI reader (2 messages)
• AW: Chain Code Implementation In ImageJ (2 messages)
• AW: Importing Metamorph Stacks
• A_3D_editing plugin update and call for help
• batch statiscs in stacks? (3 messages)
• Calculating average roundness (3 messages)
• calling PlugIn with run(String arg)
• cardiac image analysis (2 messages)
• Chain Code Implementation In ImageJ (2 messages)
• Changing color of the line (2 messages)
• Citation (2 messages)
• closing images without saving changes (2 messages)
• color overlay help request (3 messages)
• Comparing images (4 messages)
• configuration file (2 messages)
• correlation coefficient (3 messages)
• Create array of FloatProcessor (3 messages)
• createShortImage problem (3 messages)
• Creating random images (2 messages)
• Crop every images
• Cropping all windows
• customized ImageJ applet (3 messages)
• Dcm_Export (dcmie) question
• deconvolution of grayscale histogram (2 messages)
• DEM images / Stereoscopic reconstruction
• Draw Grid (2 messages)
• Dynamic Frame
• extending the crosshairs (mark and count) tool (2 messages)
• Freehand coordinates (4 messages)
• getPixel!!! (3 messages)
• getTitle !! (2 messages)
• Grow selection? (2 messages)
• Help with analyzing particles (2 messages)
• Help with Cutout in VolumeJ
• Help: ParticleAnalysis, labeling with 'area' value instead of 'id' (3 messages)
• How to get value from ROI measuremnts
• how to import classes to ImageJ (2 messages)
• Image tracking using an Roi
• ImageJ 1.3.3g and Quicktime 6.5.1
• Importing Metamorph Stacks (2 messages)
• indexed image naming (3 messages)
• Installing Macros (3 messages)
• Installing tool in main window that doesn't require an open image (3 messages)
• Interleaved file formats (ICS_opener plugin and Nikon ICS files)
• JAR compilation
• Java2D-Based RMI Imaging Application Programming Set
• linux installation problems (6 messages)
• Loading and Starting plugin automatically
• Looking for a MacOX and Linux tester for an Image_Explorer plugin (2 messages)
• macro help (5 messages)
• Macro questions (2 messages)
• map to black?? (2 messages)
• Masks for ROI (Re: "find similar" or equivalent) (7 messages)
• mean cord length measurement
• Measureing blood vessels through multiple slices (2 messages)
• Modifying the SynchWindows plugin (2 messages)
• motion deblurring plugin (4 messages)
• Multiple DICOM files via http. (warning, total newbie to jav a)
• Multiple DICOM files via http. (warning, total newbie to java)
• new plugin to open an image plus an associated text file
• New ROI manager (2 messages)
• New Wand selection tool (3 messages)
• particle analyzer (3 messages)
• Particle Analyzer Issues
• Particle shapes
• plane subtraction in ImageJ
• Plugin stop/continue (2 messages)
• Pore size calculator (2 messages)
• problem: Import Bruker MRI files (2 messages)
• Reg. How to use FlowJ.
• removing small objects (2 messages)
• Resizing Dialog.
• running plugin from command line (3 messages)
• runs first image only (5 messages)
• Saving Unsigned as Signed Image
• SDS-PAGE: Molecular Weight Calibration (3 messages)
• Servlet using ImageJ??? (2 messages)
• setting default scaling? (3 messages)
• Stack'n'ROIs (2 messages)
• storing 16bit DICOM images once altered
• Subject: ImageJ appropriate for evaluation of Thin LayerChromatopgraphy ? (2 messages)
• the ibot camera and FWCamAkiz (2 messages)
• Threshold on 16 bits images (2 messages)
• unsubscribe (2 messages)
• vector
• vector based drawing (2 messages)
• Virus and spam problems
• Volumes... (2 messages)
• VTK plugins (3 messages)
• Wand-selected ROI coordinates in plugin
• watershed function sensibility (4 messages)

1. <No subject>
   • <No subject> (36 lines)
   • <No subject> (23 lines)
   • <No subject> (221 lines)
   • <No subject> (455 lines)
   • <No subject> (23 lines)
   • <No subject> (54 lines)
   • <No subject> (35 lines)
   • <No subject> (48 lines)
   • <No subject> (42 lines)
   • <No subject> (48 lines)

2. A suggestion/question
   • A suggestion/question (43 lines)

3. Actions on every windows
   • Actions on every windows (42 lines)

4. Adding buttons to default ImageJ panels
   • Adding buttons to default ImageJ panels (45 lines)
   • Re: Adding buttons to default ImageJ panels (38 lines)

5. Adding to default ImageJ menu
   • Adding to default ImageJ menu (40 lines)

6. align images
   • align images (67 lines)

7. alignment
   • alignment (52 lines)

8. analysis of data.
   • analysis of data. (70 lines)
   • Re: analysis of data. (68 lines)
   • Re: analysis of data. (106 lines)
   • Re: analysis of data. (32 lines)

9. Annoying automatic macro
   • Annoying automatic macro (55 lines)

10. Antwort: Re: problem: Import Bruker MRI files
    • Antwort: Re: problem: Import Bruker MRI files (48 lines)
    • Re: Antwort: Re: problem: Import Bruker MRI files (48 lines)

11. Any copyrights on the images
    • Any copyrights on the images (46 lines)
    • Re: Any copyrights on the images (31 lines)

12. applet crashing
    • applet crashing (40 lines)
    • Re: applet crashing (40 lines)

13. Appropriate for evaluation of Thin LayerChromatopgraphy ?
    • Appropriate for evaluation of Thin LayerChromatopgraphy ? (127 lines)

14. Automatic adding ROIs to Multi-Measure
    • Automatic adding ROIs to Multi-Measure (70 lines)
    • Re: Automatic adding ROIs to Multi-Measure (79 lines)
    • Re: Automatic adding ROIs to Multi-Measure (62 lines)
    • Re: Automatic adding ROIs to Multi-Measure (72 lines)

15. Automatic Images Comparison
    • Automatic Images Comparison (42 lines)
    • Re: Automatic Images Comparison (78 lines)

16. AVI reader
    • AVI reader (33 lines)
    • Re: AVI reader (75 lines)

17. AW: Chain Code Implementation In ImageJ
    • AW: Chain Code Implementation In ImageJ (54 lines)
    • Re: AW: Chain Code Implementation In ImageJ (62 lines)

18. AW: Importing Metamorph Stacks
    • AW: Importing Metamorph Stacks (82 lines)

19. A_3D_editing plugin update and call for help
    • A_3D_editing plugin update and call for help (71 lines)

20. batch statiscs in stacks?
    • batch statiscs in stacks? (36 lines)
    • Re: batch statiscs in stacks? (38 lines)
    • Re: batch statiscs in stacks? (46 lines)

21. Calculating average roundness
    • Calculating average roundness (48 lines)
    • Re: Calculating average roundness (75 lines)
    • Re: Calculating average roundness (97 lines)

22. calling PlugIn with run(String arg)
    • calling PlugIn with run(String arg) (20 lines)

23. cardiac image analysis
    • cardiac image analysis (51 lines)
    • Re: cardiac image analysis (65 lines)

24. Chain Code Implementation In ImageJ
    • Chain Code Implementation In ImageJ (18 lines)
    • Re: Chain Code Implementation In ImageJ (55 lines)

25. Changing color of the line
    • Changing color of the line (68 lines)
    • Re: Changing color of the line (99 lines)

26. Citation
    • Re: Citation (41 lines)
    • Re: Citation (39 lines)

27. closing images without saving changes
    • closing images without saving changes (30 lines)
    • Re: closing images without saving changes (59 lines)

28. color overlay help request
    • color overlay help request (25 lines)
    • Re: color overlay help request (84 lines)
    • Re: color overlay help request (72 lines)

29. Comparing images
    • Comparing images (40 lines)
    • Re: Comparing images (33 lines)
    • Re: Comparing images (66 lines)
    • Re: Comparing images (36 lines)

30. configuration file
    • configuration file (48 lines)
    • Re: configuration file (43 lines)

31. correlation coefficient
    • Re: correlation coefficient (39 lines)
    • Re: correlation coefficient (40 lines)
    • Re: correlation coefficient (51 lines)

32. Create array of FloatProcessor
    • Create array of FloatProcessor (66 lines)
    • Re: Create array of FloatProcessor (92 lines)
    • Re: Create array of FloatProcessor (62 lines)

33. createShortImage problem
    • createShortImage problem (45 lines)
    • Re: createShortImage problem (35 lines)
    • Re: createShortImage problem (35 lines)

34. Creating random images
    • Creating random images (39 lines)
    • Re: Creating random images (36 lines)

35. Crop every images
    • Crop every images (37 lines)

36. Cropping all windows
    • Cropping all windows (46 lines)

37. customized ImageJ applet
    • customized ImageJ applet (46 lines)
    • Re: customized ImageJ applet (30 lines)
    • Re: customized ImageJ applet (65 lines)

38. Dcm_Export (dcmie) question
    • Dcm_Export (dcmie) question (34 lines)

39. deconvolution of grayscale histogram
    • deconvolution of grayscale histogram (41 lines)
    • Re: deconvolution of grayscale histogram (60 lines)

40. DEM images / Stereoscopic reconstruction
    • DEM images / Stereoscopic reconstruction (37 lines)

41. Draw Grid
    • Draw Grid (41 lines)
    • Re: Draw Grid (44 lines)

42. Dynamic Frame
    • Dynamic Frame (34 lines)

43. extending the crosshairs (mark and count) tool
    • extending the crosshairs (mark and count) tool (40 lines)
    • Re: extending the crosshairs (mark and count) tool (40 lines)

44. Freehand coordinates
    • Freehand coordinates (48 lines)
    • Re: Freehand coordinates (44 lines)
    • Re: Freehand coordinates (64 lines)
    • Re: Freehand coordinates (40 lines)

45. getPixel!!!
    • getPixel!!! (54 lines)
    • Re: getPixel!!! (56 lines)
    • Re: getPixel!!! (71 lines)

46. getTitle !!
    • getTitle !! (49 lines)
    • Re: getTitle !! (60 lines)

47. Grow selection?
    • Grow selection? (38 lines)
    • Re: Grow selection? (45 lines)

48. Help with analyzing particles
    • Help with analyzing particles (48 lines)
    • Re: Help with analyzing particles (40 lines)

49. Help with Cutout in VolumeJ
    • Help with Cutout in VolumeJ (51 lines)

50. Help: ParticleAnalysis, labeling with 'area' value instead of 'id'
    • Help: ParticleAnalysis, labeling with 'area' value instead of 'id' (29 lines)
    • Re: Help: ParticleAnalysis, labeling with 'area' value instead of 'id' (59 lines)
    • Re: Help: ParticleAnalysis, labeling with 'area' value instead of 'id' (19 lines)

51. How to get value from ROI measuremnts
    • How to get value from ROI measuremnts (26 lines)

52. how to import classes to ImageJ
    • how to import classes to ImageJ (65 lines)
    • Re: how to import classes to ImageJ (48 lines)

53. Image tracking using an Roi
    • Image tracking using an Roi (27 lines)

54. ImageJ 1.3.3g and Quicktime 6.5.1
    • ImageJ 1.3.3g and Quicktime 6.5.1 (44 lines)

55. Importing Metamorph Stacks
    • Importing Metamorph Stacks (49 lines)
    • Re: Importing Metamorph Stacks (71 lines)

56. indexed image naming
    • indexed image naming (42 lines)
    • Re: indexed image naming (63 lines)
    • Re: indexed image naming (52 lines)

57. Installing Macros
    • Installing Macros (44 lines)
    • Re: Installing Macros (56 lines)
    • Re: Installing Macros (53 lines)

58. Installing tool in main window that doesn't require an open image
    • Installing tool in main window that doesn't require an open image (49 lines)
    • Re: Installing tool in main window that doesn't require an open image (47 lines)
    • Re: Installing tool in main window that doesn't require an open image (54 lines)

59. Interleaved file formats (ICS_opener plugin and Nikon ICS files)
    • Interleaved file formats (ICS_opener plugin and Nikon ICS files) (55 lines)

60. JAR compilation
    • JAR compilation (36 lines)

61. Java2D-Based RMI Imaging Application Programming Set
    • Java2D-Based RMI Imaging Application Programming Set (51 lines)

62. linux installation problems
    • linux installation problems (47 lines)
    • Re: linux installation problems (91 lines)
    • Re: linux installation problems (91 lines)
    • Re: linux installation problems (59 lines)
    • Re: linux installation problems (95 lines)
    • Re: linux installation problems (137 lines)

63. Loading and Starting plugin automatically
    • Loading and Starting plugin automatically (45 lines)

64. Looking for a MacOX and Linux tester for an Image_Explorer plugin
    • Looking for a MacOX and Linux tester for an Image_Explorer plugin (44 lines)
    • Re: Looking for a MacOX and Linux tester for an Image_Explorer plugin (56 lines)

65. macro help
    • macro help (34 lines)
    • Re: macro help (69 lines)
    • Re: macro help (81 lines)
    • Re: macro help (82 lines)
    • Re: macro help (52 lines)

66. Macro questions
    • Macro questions (69 lines)
    • Re: Macro questions (70 lines)

67. map to black??
    • map to black?? (43 lines)
    • Re: map to black?? (40 lines)

68. Masks for ROI (Re: "find similar" or equivalent)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (39 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (95 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (72 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (54 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (62 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (54 lines)
    • Re: Masks for ROI (Re: "find similar" or equivalent) (63 lines)

69. mean cord length measurement
    • Re: mean cord length measurement (86 lines)

70. Measureing blood vessels through multiple slices
    • Measureing blood vessels through multiple slices (57 lines)
    • Re: Measureing blood vessels through multiple slices (40 lines)

71. Modifying the SynchWindows plugin
    • Modifying the SynchWindows plugin (1155 lines)
    • Re: Modifying the SynchWindows plugin (62 lines)

72. motion deblurring plugin
    • motion deblurring plugin (44 lines)
    • Re: motion deblurring plugin (71 lines)
    • Re: motion deblurring plugin (75 lines)
    • Re: motion deblurring plugin (110 lines)

73. Multiple DICOM files via http. (warning, total newbie to jav a)
    • Re: Multiple DICOM files via http. (warning, total newbie to jav a) (35 lines)

74. Multiple DICOM files via http. (warning, total newbie to java)
    • Multiple DICOM files via http. (warning, total newbie to java) (126 lines)

75. new plugin to open an image plus an associated text file
    • new plugin to open an image plus an associated text file (64 lines)

76. New ROI manager
    • New ROI manager (59 lines)
    • Re: New ROI manager (64 lines)

77. New Wand selection tool
    • New Wand selection tool (63 lines)
    • Re: New Wand selection tool (54 lines)
    • Re: New Wand selection tool (62 lines)

78. particle analyzer
    • particle analyzer (17 lines)
    • Re: particle analyzer (39 lines)
    • Re: particle analyzer (44 lines)

79. Particle Analyzer Issues
    • Particle Analyzer Issues (52 lines)

80. Particle shapes
    • Particle shapes (53 lines)

81. plane subtraction in ImageJ
    • plane subtraction in ImageJ (43 lines)

82. Plugin stop/continue
    • Plugin stop/continue (38 lines)
    • Re: Plugin stop/continue (53 lines)

83. Pore size calculator
    • Pore size calculator (44 lines)
    • Pore size calculator (39 lines)

84. problem: Import Bruker MRI files
    • problem: Import Bruker MRI files (68 lines)
    • Re: problem: Import Bruker MRI files (69 lines)

85. Reg. How to use FlowJ.
    • Reg. How to use FlowJ. (42 lines)

86. removing small objects
    • removing small objects (44 lines)
    • Re: removing small objects (37 lines)

87. Resizing Dialog.
    • Resizing Dialog. (59 lines)

88. running plugin from command line
    • running plugin from command line (53 lines)
    • Re: running plugin from command line (70 lines)
    • Re: running plugin from command line (100 lines)

89. runs first image only
    • runs first image only (49 lines)
    • Re: runs first image only (42 lines)
    • Re: runs first image only (92 lines)
    • Re: runs first image only (75 lines)
    • Re: runs first image only (81 lines)

90. Saving Unsigned as Signed Image
    • Saving Unsigned as Signed Image (40 lines)

91. SDS-PAGE: Molecular Weight Calibration
    • SDS-PAGE: Molecular Weight Calibration (54 lines)
    • Re: SDS-PAGE: Molecular Weight Calibration (34 lines)
    • Re: SDS-PAGE: Molecular Weight Calibration (70 lines)

92. Servlet using ImageJ???
    • Servlet using ImageJ??? (33 lines)
    • Re: Servlet using ImageJ??? (32 lines)

93. setting default scaling?
    • setting default scaling? (55 lines)
    • Re: setting default scaling? (57 lines)
    • Re: setting default scaling? (71 lines)

94. Stack'n'ROIs
    • Stack'n'ROIs (59 lines)
    • Re: Stack'n'ROIs (37 lines)

95. storing 16bit DICOM images once altered
    • Re: storing 16bit DICOM images once altered (47 lines)

96. Subject: ImageJ appropriate for evaluation of Thin LayerChromatopgraphy ?
    • Subject: ImageJ appropriate for evaluation of Thin LayerChromatopgraphy ? (85 lines)
    • Re: Subject: ImageJ appropriate for evaluation of Thin LayerChromatopgraphy ? (119 lines)

97. the ibot camera and FWCamAkiz
    • the ibot camera and FWCamAkiz (73 lines)
    • Re: the ibot camera and FWCamAkiz (48 lines)

98. Threshold on 16 bits images
    • Threshold on 16 bits images (37 lines)
    • Re: Threshold on 16 bits images (31 lines)

99. unsubscribe
    • unsubscribe (37 lines)
    • unsubscribe (31 lines)

100. vector
     • vector (47 lines)

101. vector based drawing
     • vector based drawing (45 lines)
     • Re: vector based drawing (33 lines)

102. Virus and spam problems
     • Virus and spam problems (75 lines)

103. Volumes...
     • Volumes... (35 lines)
     • Re: Volumes... (51 lines)

104. VTK plugins
     • VTK plugins (49 lines)
     • Re: VTK plugins (71 lines)
     • Re: VTK plugins (77 lines)

105. Wand-selected ROI coordinates in plugin
     • Wand-selected ROI coordinates in plugin (71 lines)

106. watershed function sensibility
     • watershed function sensibility (58 lines)
     • Re: watershed function sensibility (99 lines)
     • Re: watershed function sensibility (77 lines)
     • Re: watershed function sensibility (52 lines)

Center for Information Technology National Institutes of Health Bethesda, Maryland 20892 301 594 6248 (v) 301 496 8294 (TDD) Comments and Assistance Accessibility