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MicroArray Explorer (MAExplorer)
Description: Microarray Explorer (MAExplorer) is a Java-based data-mining facility
for cDNA or oligonucleiotide microarray databases. It may be downloaded
and run as a stand-alone application on your computer. Its exploratory
data analysis environment provides tools for the data-mining of
quantitative expression profiles across multiple microarrays. - Analyzes data (after arrays have been scanned and spots quantified)
- Handles multiple cDNA or oligo array samples with replicate spots
- Manages replicate samples, named condition sets of samples, and lists of condition sets
- Manages named subsets of genes
- Handles intensity or ratio (Cy3/Cy5) quantified array data
- Analyzes data for 2-conditions and N-condition expression profiles
including ANOVA on any number of conditions of replicate samples
- Data-filters gene sets by statistics, clustering, gene set membership
- Provides direct data manipulation in graphics, spreadsheets and sample management
- Accesses genomic Web servers from plots and reports
- Converts your data using Cvt2Mae data conversion wizard
- Both MAExplorer and Cvt2Mae are written in Java for portability with download installers making it easy to run on any system
- Users may update these programs, once installed, by downloading just
the Java jar file(s) using update commands.
- May be extended using new analytic methods written as either Java plug-ins using the MAEPlugin Open Java API, or R statistics and graphics language plug-ins methods called RLOs
using the RtestPlugin tool
Web Sites: http://open2dprot.sourceforge.net/ http://www.ccrnp.ncifcrf.gov/MAExplorer
Availability: Open-source, downloadable.
Cost: Free
Contact: Dr. Peter Lemkin; lemkin@ncifcrf.gov
This page last updated 2006-09-05 09:10:46
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